Attention: Jupyter services at the JSC site *are currently running normally*, but the underlying infrastructure remains fragile. If you encounter issues when using the JSC, we recommend selecting the Cineca execution site as an alternative


Dynamic Causal Modeling in Probabilistic Programming Languages

Version 10.1 by mhashemi on 2024/12/03 16:21

 

 

This tool was developed at INS in Marseille.
Authors: Nina Baldy, Marmaduke Woodman, Viktor Jirsa, Meysam Hashemi

The aim is to provide inference services for Dynamical Causal Modeling of Event-Related Potentials (ERPs) measured with EEG/MEG, using SATO Probabilistic Programming Languages (PPLs):

Numpyro: https://num.pyro.ai/en/stable/

Blackjax: https://blackjax-devs.github.io/blackjax/

PyMC: https://www.pymc.io/welcome.html

Stan: https://mc-stan.org/

Notebooks:

https://wiki.ebrains.eu/bin/view/Collabs/ebrains-task-3-3/Drive#notebooks/DCM_ERP_NumPyro

Tutorial:

https://wiki.ebrains.eu/bin/view/Collabs/ebrains-task-3-3/Drive#notebooks/EITN_tutorial 

@article{Baldy2024AutoDCM,
  title={Dynamic Causal Modeling in Probabilistic Programming Languages},
  author={Baldy, Nina and Woodman, Marmaduke and Jirsa, Viktor and Hashemi, Meysam},
  journal={bioRxiv},
  pages={2024--11},
  year={2024},
  publisher={Cold Spring Harbor Laboratory}
}