Last modified by mhashemi on 2022/06/21 12:37
From version 12.1
edited by mhashemi
on 2020/06/25 12:43
Change comment: There is no comment for this version
To version 8.1
edited by mhashemi
on 2020/06/12 18:53
Change comment: There is no comment for this version

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1 -= Bayesian Virtual Epileptic Patient (BVEP) =
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4 -Bayesian Virtual Epileptic Patient (BVEP): a probabilistic framework designed to infer the spatial map of epileptogenicity in a personalized large-scale brain model of epilepsy spread by PPLs using No-U-Turn Sam- pler (NUTS) and Automatic Differentiation Variational Inference (ADVI).
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7 -Installation:
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9 -For simulation using TVB:
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11 -[[https:~~/~~/www.thevirtualbrain.org/tvb/zwei>>url:https://www.thevirtualbrain.org/tvb/zwei]]
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13 -For inference using Stan:
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15 -[[https:~~/~~/mc-stan.org/>>url:https://mc-stan.org/]]
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17 -For inference using PyMC3:
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19 -[[https:~~/~~/docs.pymc.io/>>url:https://docs.pymc.io/]]
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23 -Notebooks:
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25 -Bayesian inference of 2D Epileptor model:
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27 -[[https:~~/~~/lab.ebrains.eu/user-redirect/lab/tree/drive/Shared%20with%20all/>>url:https://lab.ebrains.eu/user-redirect/lab/tree/drive/Shared%20with%20all/TVB%20Mouse%20Brains]][[Bayesian%20Virtual%20Epileptic%20Patient/FittingEpileptor2D.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/FittingEpileptor2D.ipynb]]
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29 -Cross-validation and hypothesis inference in 2D Epileptor model:
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31 -[[https:~~/~~/lab.ebrains.eu/user-redirect/lab/tree/drive/Shared%20with%20all/>>url:https://lab.ebrains.eu/user-redirect/lab/tree/drive/Shared%20with%20all/TVB%20Mouse%20Brains]][[Bayesian%20Virtual%20Epileptic%20Patient/EpileptorInferHyposPrior.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/EpileptorInferHyposPrior.ipynb]]
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33 -Bayesian inference of VEP whole-brain network model:
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35 -[[https:~~/~~/lab.ebrains.eu/user-redirect/lab/tree/drive/Shared%20with%20all/>>url:https://lab.ebrains.eu/user-redirect/lab/tree/drive/Shared%20with%20all/TVB%20Mouse%20Brains]][[Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb]]
1 +[[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb]]