Warning:  Due to planned infrastructure maintenance, the EBRAINS Wiki and EBRAINS Support system will be unavailable for up to three days starting Monday, 14 July. During this period, both services will be inaccessible, and any emails sent to the support address will not be received.

Attention: We are currently experiencing some issues with the EBRAINS Drive. Please bear with us as we fix this issue. We apologise for any inconvenience caused.


Last modified by mhashemi on 2022/06/21 12:37
From version 25.1
edited by mhashemi
on 2022/06/21 12:32
Change comment: There is no comment for this version
To version 21.1
edited by mhashemi
on 2021/04/16 21:38
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -1,7 +1,7 @@
1 1  = Bayesian Virtual Epileptic Patient (BVEP) =
2 2  
3 3  
4 -Bayesian Virtual Epileptic Patient (BVEP): a probabilistic framework designed to infer the spatial map of epileptogenicity in a personalized large-scale brain model of epilepsy spread by PPLs using No-U-Turn Sampler (NUTS) and Automatic Differentiation Variational Inference (ADVI), and also now using the state-of-the-art deep learning algorithms for conditional density estimation in simulation-based-inference (SBI) framework.
4 +Bayesian Virtual Epileptic Patient (BVEP): a probabilistic framework designed to infer the spatial map of epileptogenicity in a personalized large-scale brain model of epilepsy spread by PPLs using No-U-Turn Sam- pler (NUTS) and Automatic Differentiation Variational Inference (ADVI).
5 5  
6 6  
7 7  Installation:
... ... @@ -19,11 +19,7 @@
19 19  [[https:~~/~~/docs.pymc.io/>>url:https://docs.pymc.io/]]
20 20  
21 21  
22 -For inference using SBI:
23 23  
24 -[[https:~~/~~/www.mackelab.org/sbi/>>https://www.mackelab.org/sbi/]]
25 -
26 -
27 27  Notebooks:
28 28  
29 29  Bayesian inference of 2D Epileptor model:
... ... @@ -38,10 +38,4 @@
38 38  
39 39  Bayesian inference of VEP whole-brain network model:
40 40  
41 -
42 -shared/Bayesian Virtual Epileptic Patient/BVEP_ode_sbi_sourcelevel_patient1_savesim_v18.ipynb
43 -
44 -[[https:~~/~~/lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_sde_sbi_maf_seeg_GrExp_patient1.ipynb>>https://lab.ch.ebrains.eu/hub/user-redirect/lab/tree/shared/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_sde_sbi_maf_seeg_GrExp_patient1.ipynb]]
45 -
46 -
47 -SBI-VEP:
37 +[[https:~~/~~/lab.ebrains.eu/user/user-redirect/lab/tree/drive/Shared%20with%20all/Bayesian%20Virtual%20Epileptic%20Patient/FittingEpileptor2D.ipynb>>url:https://lab.ebrains.eu/user/user-redirect/lab/tree/drive/Shared with all/Bayesian Virtual Epileptic Patient/FittingEpileptor2D.ipynb]]
Collaboratory.Apps.Collab.Code.CollabClass[0]
owner
... ... @@ -1,1 +1,0 @@
1 -mhashemi
XWiki.XWikiRights[8]
Allow/Deny
... ... @@ -1,1 +1,0 @@
1 -Allow
Groups
... ... @@ -1,1 +1,0 @@
1 -XWiki.XWikiAllGroup
Levels
... ... @@ -1,1 +1,0 @@
1 -view
XWiki.XWikiRights[6]
Allow/Deny
... ... @@ -1,0 +1,1 @@
1 +Allow
Groups
... ... @@ -1,0 +1,1 @@
1 +XWiki.XWikiAllGroup
Levels
... ... @@ -1,0 +1,1 @@
1 +view