Last modified by mhashemi on 2022/06/21 12:37
From version 6.1
edited by mhashemi
on 2020/06/12 18:41
Change comment: There is no comment for this version
To version 9.1
edited by mhashemi
on 2020/06/12 18:58
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -1,35 +1,33 @@
1 -(% class="jumbotron" %)
2 -(((
3 -(% class="container" %)
4 -(((
5 -= My Collab's Extended Title =
1 += Bayesian Virtual Epileptic Patient (BVEP) =
6 6  
7 -My collab's subtitle
8 -)))
9 -)))
10 10  
11 -(% class="row" %)
12 -(((
13 -(% class="col-xs-12 col-sm-8" %)
14 -(((
15 -= What can I find here? =
4 +Bayesian Virtual Epileptic Patient (BVEP) to invert a individualized whole-brain model of epilepsy spread by PPLs using No-U-Turn Sam- pler (NUTS) and Automatic Differentiation Variational Inference (ADVI).
16 16  
17 -* Notice how the table of contents on the right
18 -* is automatically updated
19 -* to hold this page's headers
6 +Installation:
20 20  
21 -= Who has access? =
8 +For simulation using TVB:
22 22  
23 -Describe the audience of this collab.
24 -)))
10 +[[https:~~/~~/www.thevirtualbrain.org/tvb/zwei>>url:https://www.thevirtualbrain.org/tvb/zwei]]
25 25  
12 +For inference using Stan:
26 26  
27 -(% class="col-xs-12 col-sm-4" %)
28 -(((
29 -{{box title="**Contents**"}}
30 -{{toc/}}
31 -{{/box}}
14 +[[https:~~/~~/mc-stan.org/>>url:https://mc-stan.org/]]
32 32  
33 -
34 -)))
35 -)))
16 +For inference using PyMC3:
17 +
18 +[[https:~~/~~/docs.pymc.io/>>url:https://docs.pymc.io/]]
19 +
20 +
21 +Notebooks:
22 +
23 +Bayesian inference of Epiletor model:
24 +
25 +[[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/FittingEpileptor2D.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/FittingEpileptor2D.ipynb]]
26 +
27 +Cross-validation and hypothesis inference :
28 +
29 +[[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/EpileptorInferHyposPrior.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/EpileptorInferHyposPrior.ipynb]]
30 +
31 +Bayesian inference of VEP brain model:
32 +
33 +[[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb]]