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1		-(% class="jumbotron" %)
2		-(((
3		-(% class="container" %)
4		-(((
5		-= My Collab's Extended Title =
	1	+= Bayesian Virtual Epileptic Patient (BVEP) =
6	6
7		-My collab's subtitle
8		-)))
9		-)))
10	10
11		-(% class="row" %)
12		-(((
13		-(% class="col-xs-12 col-sm-8" %)
14		-(((
15		-= What can I find here? =
	4	+Bayesian Virtual Epileptic Patient (BVEP) to invert a individualized whole-brain model of epilepsy spread by PPLs using No-U-Turn Sam- pler (NUTS) and Automatic Differentiation Variational Inference (ADVI).
16	16
17		-* Notice how the table of contents on the right
18		-* is automatically updated
19		-* to hold this page's headers
	6	+Installation:
20	20
21		-= Who has access? =
	8	+For simulation using TVB:
22	22
23		-Describe the audience of this collab.
24		-)))
	10	+[[https:~~/~~/www.thevirtualbrain.org/tvb/zwei>>url:https://www.thevirtualbrain.org/tvb/zwei]]
25	25
	12	+For inference using Stan:
26	26
27		-(% class="col-xs-12 col-sm-4" %)
28		-(((
29		-{{box title="**Contents**"}}
30		-{{toc/}}
31		-{{/box}}
	14	+[[https:~~/~~/mc-stan.org/>>url:https://mc-stan.org/]]
32	32
33		-
34		-)))
35		-)))
	16	+For inference using PyMC3:
	17	+
	18	+[[https:~~/~~/docs.pymc.io/>>url:https://docs.pymc.io/]]
	19	+
	20	+
	21	+Notebooks:
	22	+
	23	+Bayesian inference of Epiletor model:
	24	+
	25	+[[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/FittingEpileptor2D.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/FittingEpileptor2D.ipynb]]
	26	+
	27	+Cross-validation and hypothesis inference :
	28	+
	29	+[[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/EpileptorInferHyposPrior.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/EpileptorInferHyposPrior.ipynb]]
	30	+
	31	+Bayesian inference of VEP brain model:
	32	+
	33	+[[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb]]