Warning:  Due to planned infrastructure maintenance, the EBRAINS Wiki and EBRAINS Support system will be unavailable for up to three days starting Monday, 14 July. During this period, both services will be inaccessible, and any emails sent to the support address will not be received.

Attention: The EBRAINS Chat will down on Thursday, the 10th of July 2025 starting from 18.00pm CEST (my timezone) for up to 1 hour. 

Warning: The EBRAINS Drive and EBRAINS Lab will down today, Thursday, the 10th of July 2025 starting from 18:00 CEST (my timezone) for up to 1 hour.


Last modified by mhashemi on 2022/06/21 12:37

From version 7.1
edited by mhashemi
on 2020/06/12 18:52
Change comment: There is no comment for this version
To version 9.1
edited by mhashemi
on 2020/06/12 18:58
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -1,35 +1,33 @@
1 -(% class="jumbotron" %)
2 -(((
3 -(% class="container" %)
4 -(((
5 -= {{jupyterlink}}https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb{{/jupyterlink}}My Collab's Extended Title =
1 += Bayesian Virtual Epileptic Patient (BVEP) =
6 6  
7 -My collab's subtitle
8 -)))
9 -)))
10 10  
11 -(% class="row" %)
12 -(((
13 -(% class="col-xs-12 col-sm-8" %)
14 -(((
15 -= What can I find here? =
4 +Bayesian Virtual Epileptic Patient (BVEP) to invert a individualized whole-brain model of epilepsy spread by PPLs using No-U-Turn Sam- pler (NUTS) and Automatic Differentiation Variational Inference (ADVI).
16 16  
17 -* Notice how the table of contents on the right
18 -* is automatically updated
19 -* to hold this page's headers
6 +Installation:
20 20  
21 -= Who has access? =
8 +For simulation using TVB:
22 22  
23 -Describe the audience of this collab.
24 -)))
10 +[[https:~~/~~/www.thevirtualbrain.org/tvb/zwei>>url:https://www.thevirtualbrain.org/tvb/zwei]]
25 25  
12 +For inference using Stan:
26 26  
27 -(% class="col-xs-12 col-sm-4" %)
28 -(((
29 -{{box title="**Contents**"}}
30 -{{toc/}}
31 -{{/box}}
14 +[[https:~~/~~/mc-stan.org/>>url:https://mc-stan.org/]]
32 32  
33 -
34 -)))
35 -)))
16 +For inference using PyMC3:
17 +
18 +[[https:~~/~~/docs.pymc.io/>>url:https://docs.pymc.io/]]
19 +
20 +
21 +Notebooks:
22 +
23 +Bayesian inference of Epiletor model:
24 +
25 +[[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/FittingEpileptor2D.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/FittingEpileptor2D.ipynb]]
26 +
27 +Cross-validation and hypothesis inference :
28 +
29 +[[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/EpileptorInferHyposPrior.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/EpileptorInferHyposPrior.ipynb]]
30 +
31 +Bayesian inference of VEP brain model:
32 +
33 +[[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb]]