Last modified by mhashemi on 2022/06/21 12:37
From version 8.1
edited by mhashemi
on 2020/06/12 18:53
Change comment: There is no comment for this version
To version 22.1
edited by mhashemi
on 2021/04/16 21:38
Change comment: There is no comment for this version

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1 -[[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb]]
1 += Bayesian Virtual Epileptic Patient (BVEP) =
2 +
3 +
4 +Bayesian Virtual Epileptic Patient (BVEP): a probabilistic framework designed to infer the spatial map of epileptogenicity in a personalized large-scale brain model of epilepsy spread by PPLs using No-U-Turn Sam- pler (NUTS) and Automatic Differentiation Variational Inference (ADVI).
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6 +
7 +Installation:
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9 +For simulation using TVB:
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11 +[[https:~~/~~/www.thevirtualbrain.org/tvb/zwei>>url:https://www.thevirtualbrain.org/tvb/zwei]]
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13 +For inference using Stan:
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15 +[[https:~~/~~/mc-stan.org/>>url:https://mc-stan.org/]]
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17 +For inference using PyMC3:
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19 +[[https:~~/~~/docs.pymc.io/>>url:https://docs.pymc.io/]]
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21 +
22 +
23 +Notebooks:
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25 +Bayesian inference of 2D Epileptor model:
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27 +[[https:~~/~~/lab.ebrains.eu/user/user-redirect/lab/tree/drive/Shared%20with%20all/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb>>url:https://lab.ebrains.eu/user/user-redirect/lab/tree/drive/Shared with all/Bayesian Virtual Epileptic Patient/BVEP_noncen_pymc3_patient1.ipynb]]
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29 +
30 +Cross-validation and hypothesis inference in 2D Epileptor model:
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32 +[[https:~~/~~/lab.ebrains.eu/user/user-redirectm/lab/tree/drive/Shared%20with%20all/Bayesian%20Virtual%20Epileptic%20Patient/EpileptorInferHyposPrior.ipynb>>url:https://lab.ebrains.eu/user/user-redirectm/lab/tree/drive/Shared with all/Bayesian Virtual Epileptic Patient/EpileptorInferHyposPrior.ipynb]]
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34 +
35 +Bayesian inference of VEP whole-brain network model:
36 +
37 +[[https:~~/~~/lab.ebrains.eu/user/user-redirect/lab/tree/drive/Shared%20with%20all/Bayesian%20Virtual%20Epileptic%20Patient/FittingEpileptor2D.ipynb>>url:https://lab.ebrains.eu/user/user-redirect/lab/tree/drive/Shared with all/Bayesian Virtual Epileptic Patient/FittingEpileptor2D.ipynb]]
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