Last modified by mhashemi on 2022/06/21 12:37
From version 9.1
edited by mhashemi
on 2020/06/12 18:58
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To version 23.1
edited by mhashemi
on 2022/03/22 18:09
Change comment: Migrated property [owner] from class [Collaboratory.Apps.Collab.Code.CollabClass]

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1 1  = Bayesian Virtual Epileptic Patient (BVEP) =
2 2  
3 3  
4 -Bayesian Virtual Epileptic Patient (BVEP) to invert a individualized whole-brain model of epilepsy spread by PPLs using No-U-Turn Sam- pler (NUTS) and Automatic Differentiation Variational Inference (ADVI).
4 +Bayesian Virtual Epileptic Patient (BVEP): a probabilistic framework designed to infer the spatial map of epileptogenicity in a personalized large-scale brain model of epilepsy spread by PPLs using No-U-Turn Sam- pler (NUTS) and Automatic Differentiation Variational Inference (ADVI).
5 5  
6 +
6 6  Installation:
7 7  
8 8  For simulation using TVB:
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18 18  [[https:~~/~~/docs.pymc.io/>>url:https://docs.pymc.io/]]
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20 20  
22 +
21 21  Notebooks:
22 22  
23 -Bayesian inference of Epiletor model:
25 +Bayesian inference of 2D Epileptor model:
24 24  
25 -[[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/FittingEpileptor2D.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/FittingEpileptor2D.ipynb]]
27 +[[https:~~/~~/lab.ebrains.eu/user/user-redirect/lab/tree/drive/Shared%20with%20all/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb>>url:https://lab.ebrains.eu/user/user-redirect/lab/tree/drive/Shared with all/Bayesian Virtual Epileptic Patient/BVEP_noncen_pymc3_patient1.ipynb]]
26 26  
27 -Cross-validation and hypothesis inference :
28 28  
29 -[[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/EpileptorInferHyposPrior.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/EpileptorInferHyposPrior.ipynb]]
30 +Cross-validation and hypothesis inference in 2D Epileptor model:
30 30  
31 -Bayesian inference of VEP brain model:
32 +[[https:~~/~~/lab.ebrains.eu/user/user-redirectm/lab/tree/drive/Shared%20with%20all/Bayesian%20Virtual%20Epileptic%20Patient/EpileptorInferHyposPrior.ipynb>>url:https://lab.ebrains.eu/user/user-redirectm/lab/tree/drive/Shared with all/Bayesian Virtual Epileptic Patient/EpileptorInferHyposPrior.ipynb]]
32 32  
33 -[[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb]]
34 +
35 +Bayesian inference of VEP whole-brain network model:
36 +
37 +[[https:~~/~~/lab.ebrains.eu/user/user-redirect/lab/tree/drive/Shared%20with%20all/Bayesian%20Virtual%20Epileptic%20Patient/FittingEpileptor2D.ipynb>>url:https://lab.ebrains.eu/user/user-redirect/lab/tree/drive/Shared with all/Bayesian Virtual Epileptic Patient/FittingEpileptor2D.ipynb]]
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