Last modified by mhashemi on 2022/06/21 12:37
From version 9.1
edited by mhashemi
on 2020/06/12 18:58
Change comment: There is no comment for this version
To version 7.1
edited by mhashemi
on 2020/06/12 18:52
Change comment: There is no comment for this version

Summary

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1 -= Bayesian Virtual Epileptic Patient (BVEP) =
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5 += {{jupyterlink}}https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb{{/jupyterlink}}My Collab's Extended Title =
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7 +My collab's subtitle
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4 -Bayesian Virtual Epileptic Patient (BVEP) to invert a individualized whole-brain model of epilepsy spread by PPLs using No-U-Turn Sam- pler (NUTS) and Automatic Differentiation Variational Inference (ADVI).
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15 += What can I find here? =
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6 -Installation:
17 +* Notice how the table of contents on the right
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8 -For simulation using TVB:
21 += Who has access? =
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10 -[[https:~~/~~/www.thevirtualbrain.org/tvb/zwei>>url:https://www.thevirtualbrain.org/tvb/zwei]]
23 +Describe the audience of this collab.
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12 -For inference using Stan:
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14 -[[https:~~/~~/mc-stan.org/>>url:https://mc-stan.org/]]
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29 +{{box title="**Contents**"}}
30 +{{toc/}}
31 +{{/box}}
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16 -For inference using PyMC3:
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18 -[[https:~~/~~/docs.pymc.io/>>url:https://docs.pymc.io/]]
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21 -Notebooks:
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23 -Bayesian inference of Epiletor model:
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25 -[[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/FittingEpileptor2D.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/FittingEpileptor2D.ipynb]]
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27 -Cross-validation and hypothesis inference :
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29 -[[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/EpileptorInferHyposPrior.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/EpileptorInferHyposPrior.ipynb]]
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31 -Bayesian inference of VEP brain model:
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33 -[[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb]]
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