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Last modified by mhashemi on 2022/06/21 12:37

From version 9.2
edited by mhashemi
on 2020/06/12 19:00
Change comment: There is no comment for this version
To version 7.1
edited by mhashemi
on 2020/06/12 18:52
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
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1 -= Bayesian Virtual Epileptic Patient (BVEP) =
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5 += {{jupyterlink}}https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb{{/jupyterlink}}My Collab's Extended Title =
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7 +My collab's subtitle
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4 -Bayesian Virtual Epileptic Patient (BVEP): a probabilistic framework designed to infer the spatial map of epileptogenicity in a personalized large-scale brain model of epilepsy spread by PPLs using No-U-Turn Sam- pler (NUTS) and Automatic Differentiation Variational Inference (ADVI).
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15 += What can I find here? =
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17 +* Notice how the table of contents on the right
18 +* is automatically updated
19 +* to hold this page's headers
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7 -Installation:
21 += Who has access? =
8 8  
9 -For simulation using TVB:
23 +Describe the audience of this collab.
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11 -[[https:~~/~~/www.thevirtualbrain.org/tvb/zwei>>url:https://www.thevirtualbrain.org/tvb/zwei]]
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13 -For inference using Stan:
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29 +{{box title="**Contents**"}}
30 +{{toc/}}
31 +{{/box}}
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15 -[[https:~~/~~/mc-stan.org/>>url:https://mc-stan.org/]]
16 -
17 -For inference using PyMC3:
18 -
19 -[[https:~~/~~/docs.pymc.io/>>url:https://docs.pymc.io/]]
20 -
21 -
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23 -Notebooks:
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25 -Bayesian inference of Epiletor model:
26 -
27 -[[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/FittingEpileptor2D.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/FittingEpileptor2D.ipynb]]
28 -
29 -Cross-validation and hypothesis inference :
30 -
31 -[[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/EpileptorInferHyposPrior.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/EpileptorInferHyposPrior.ipynb]]
32 -
33 -Bayesian inference of VEP brain model:
34 -
35 -[[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb]]
33 +
34 +)))
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