Bayesian Virtual Epileptic Patient (BVEP)

Bayesian Virtual Epileptic Patient (BVEP): a probabilistic framework designed to infer the spatial map of epileptogenicity in a personalized large-scale brain model of epilepsy spread by PPLs using No-U-Turn Sam- pler (NUTS) and Automatic Differentiation Variational Inference (ADVI).

Installation:

For simulation using TVB:

https://www.thevirtualbrain.org/tvb/zwei

For inference using Stan:

https://mc-stan.org/

For inference using PyMC3:

https://docs.pymc.io/

Notebooks:

Bayesian inference of Epiletor model:

https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/FittingEpileptor2D.ipynb

Cross-validation and hypothesis inference :

https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/EpileptorInferHyposPrior.ipynb

Bayesian inference of VEP brain model:

https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb