Wiki source code of Bayesian Virtual Epileptic Patient

Version 18.1 by mhashemi on 2020/06/25 14:18

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9.1	1	= Bayesian Virtual Epileptic Patient (BVEP) =
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9.2	4	Bayesian Virtual Epileptic Patient (BVEP): a probabilistic framework designed to infer the spatial map of epileptogenicity in a personalized large-scale brain model of epilepsy spread by PPLs using No-U-Turn Sam- pler (NUTS) and Automatic Differentiation Variational Inference (ADVI).
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9.1	7	Installation:
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	9	For simulation using TVB:
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	11	[[https:~~/~~/www.thevirtualbrain.org/tvb/zwei>>url:https://www.thevirtualbrain.org/tvb/zwei]]
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	13	For inference using Stan:
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	15	[[https:~~/~~/mc-stan.org/>>url:https://mc-stan.org/]]
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	17	For inference using PyMC3:
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	19	[[https:~~/~~/docs.pymc.io/>>url:https://docs.pymc.io/]]
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9.1	23	Notebooks:
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11.1	25	Bayesian inference of 2D Epileptor model:
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16.1	27	[[https:~~/~~/lab.ebrains.eu/user/user-redirect/lab/tree/drive/Shared%20with%20all/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb>>url:https://lab.ebrains.eu/user/user-redirect/lab/tree/drive/Shared with all/Bayesian Virtual Epileptic Patient/BVEP_noncen_pymc3_patient1.ipynb]]
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11.1	30	Cross-validation and hypothesis inference in 2D Epileptor model:
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16.1	32	[[https:~~/~~/lab.ebrains.eu/user/user-redirectm/lab/tree/drive/Shared%20with%20all/Bayesian%20Virtual%20Epileptic%20Patient/EpileptorInferHyposPrior.ipynb>>url:https://lab.ebrains.eu/user/user-redirectm/lab/tree/drive/Shared with all/Bayesian Virtual Epileptic Patient/EpileptorInferHyposPrior.ipynb]]
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11.1	35	Bayesian inference of VEP whole-brain network model:
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16.1	37	[[https:~~/~~/lab.ebrains.eu/user/user-redirect/lab/tree/drive/Shared%20with%20all/Bayesian%20Virtual%20Epileptic%20Patient/FittingEpileptor2D.ipynb>>url:https://lab.ebrains.eu/user/user-redirect/lab/tree/drive/Shared with all/Bayesian Virtual Epileptic Patient/FittingEpileptor2D.ipynb]]