Version 9.1 by mhashemi on 2020/06/12 18:58
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mhashemi 9.1 1 = Bayesian Virtual Epileptic Patient (BVEP) =
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4 Bayesian Virtual Epileptic Patient (BVEP) to invert a individualized whole-brain model of epilepsy spread by PPLs using No-U-Turn Sam- pler (NUTS) and Automatic Differentiation Variational Inference (ADVI).
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6 Installation:
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8 For simulation using TVB:
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10 [[https:~~/~~/www.thevirtualbrain.org/tvb/zwei>>url:https://www.thevirtualbrain.org/tvb/zwei]]
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12 For inference using Stan:
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14 [[https:~~/~~/mc-stan.org/>>url:https://mc-stan.org/]]
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16 For inference using PyMC3:
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18 [[https:~~/~~/docs.pymc.io/>>url:https://docs.pymc.io/]]
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21 Notebooks:
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23 Bayesian inference of Epiletor model:
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25 [[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/FittingEpileptor2D.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/FittingEpileptor2D.ipynb]]
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27 Cross-validation and hypothesis inference :
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29 [[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/EpileptorInferHyposPrior.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/EpileptorInferHyposPrior.ipynb]]
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31 Bayesian inference of VEP brain model:
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mhashemi 8.1 33 [[https:~~/~~/lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb>>https://lab.ebrains.eu/user/mhashemi/lab/tree/drive/Shared%20with%20groups/Bayesian%20Virtual%20Epileptic%20Patient/BVEP_noncen_pymc3_patient1.ipynb]]