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Last modified by adavison on 2023/10/11 21:18
From version 20.1
edited by adavison
on 2023/10/11 21:13
Change comment: There is no comment for this version
To version 13.2
edited by legouee
on 2022/10/24 13:48
Change comment: There is no comment for this version

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2 2  (((
3 3  (% class="col-xs-12 col-sm-12" %)
4 4  (((
5 +(% class="box infomessage" %)
6 +(((
7 +This collab is under development, it is currently private. When the first case study is ready it will be made public.
8 +)))
9 +
5 5  (% class="lead" id="HAcollectionofJupyternotebooksdemonstratinghowtomakeuseofEBRAINSdatasets" %)
6 6  A collection of Jupyter notebooks demonstrating how to make use of EBRAINS datasets
7 7  
8 8  Each case study consists of a Jupyter notebook, which shows how to obtain the data and metadata associated with a given dataset, shows how to read the datafile contents, and contains some example visualisations and analyses.
9 9  
10 -Clicking on one of the links below will copy a notebook and any associated files to your home directory in the Lab, and then open the notebook. All notebooks are made available under the [[Creative Commons Attribution Licence (CC-BY)>>https://creativecommons.org/licenses/by/4.0/]].
15 +If you would like to run the notebook yourself we recommend you copy it to one of  your own collabs so that you can save any changes you might make. All notebooks are made available under the [[Creative Commons Attribution Licence (CC-BY)>>https://creativecommons.org/licenses/by/4.0/]].
11 11  
12 12  More case studies will be added over time, so please check back regularly.
13 13  
14 14  === List of case studies ===
15 15  
16 -* [[Salgueiro-Pereira & Marie: Excitability profile of CA1 pyramidal neurons in APPPS1 Alzheimer disease mice and control littermate>>https://lab.ebrains.eu/hub/user-redirect/git-pull?repo=https%3A%2F%2Fgithub.com%2FNeuroPSI-Neuroinformatics%2Fcase-studies-for-data-reuse&urlpath=lab%2Ftree%2Fcase-studies-for-data-reuse%2F10.25493-YJFW-HPY%2FSalgueiroPereiraMarie2020.ipynb&branch=main||rel="noopener noreferrer" target="_blank"]]
21 +* [[Tognolina: Whole cell patch-clamp recordings of cerebellar granule cells>>doc:Tognolina: Whole cell patch-clamp recordings of cerebellar granule cells]]
22 +* [[Mansvelder: Physiological data recording of interneurons from human temporal neocortex>>https://wiki.ebrains.eu/bin/view/Collabs/case-studies-for-data-reuse/Mansvelder%3A%20Physiological%20data%20recording%20of%20interneurons%20from%20human%20temporal%20neocortex]]
17 17  )))
18 18  )))
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