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Last modified by adavison on 2023/10/11 21:18
From version 21.1
edited by adavison
on 2023/10/11 21:18
Change comment: There is no comment for this version
To version 15.1
edited by adavison
on 2023/10/11 21:03
Change comment: There is no comment for this version

Summary

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2 2  (((
3 3  (% class="col-xs-12 col-sm-12" %)
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5 +(% class="box infomessage" %)
6 +(((
7 +This collab is under development, it is currently private. When the first case study is ready it will be made public.
8 +)))
9 +
5 5  (% class="lead" id="HAcollectionofJupyternotebooksdemonstratinghowtomakeuseofEBRAINSdatasets" %)
6 6  A collection of Jupyter notebooks demonstrating how to make use of EBRAINS datasets
7 7  
8 8  Each case study consists of a Jupyter notebook, which shows how to obtain the data and metadata associated with a given dataset, shows how to read the datafile contents, and contains some example visualisations and analyses.
9 9  
10 -Clicking on one of the links below will copy a notebook and any associated files to your home directory in the Lab, and then open the notebook. All notebooks are made available under the [[Creative Commons Attribution Licence (CC-BY)>>https://creativecommons.org/licenses/by/4.0/]].
15 +Clicking on one of the links below will copy a notebook and any associated files to your home directory in the EBRAINS Lab so that you can save any changes you might make. All notebooks are made available under the [[Creative Commons Attribution Licence (CC-BY)>>https://creativecommons.org/licenses/by/4.0/]].
11 11  
12 -(% class="box warningmessage" %)
13 -(((
14 -Note: If your server in EBRAINS Lab is not already running, you may need to click a second time on the link, once your server has started up.
15 -)))
16 -
17 17  More case studies will be added over time, so please check back regularly.
18 18  
19 19  === List of case studies ===
20 20  
21 -* [[Salgueiro-Pereira & Marie: Excitability profile of CA1 pyramidal neurons in APPPS1 Alzheimer disease mice and control littermate>>https://lab.ebrains.eu/hub/user-redirect/git-pull?repo=https%3A%2F%2Fgithub.com%2FNeuroPSI-Neuroinformatics%2Fcase-studies-for-data-reuse&urlpath=lab%2Ftree%2Fcase-studies-for-data-reuse%2F10.25493-YJFW-HPY%2FSalgueiroPereiraMarie2020.ipynb&branch=main||rel="noopener noreferrer" target="_blank"]]
21 +* [[Salgueiro-Pereira & Marie: Excitability profile of CA1 pyramidal neurons in APPPS1 Alzheimer disease mice and control littermates>>https://lab.ebrains.eu/hub/user-redirect/git-pull?repo=https%3A%2F%2Fgithub.com%2FNeuroPSI-Neuroinformatics%2Fcase-studies-for-data-reuse&urlpath=lab%2Ftree%2Fcase-studies-for-data-reuse%2F10.25493-YJFW-HPY%2FSalgueiroPereiraMarie2020.ipynb&branch=main||rel=" noopener noreferrer" target="_blank"]]
22 +* [[Tognolina: Whole cell patch-clamp recordings of cerebellar granule cells>>doc:Tognolina: Whole cell patch-clamp recordings of cerebellar granule cells]]
23 +* [[Mansvelder: Physiological data recording of interneurons from human temporal neocortex>>https://wiki.ebrains.eu/bin/view/Collabs/case-studies-for-data-reuse/Mansvelder%3A%20Physiological%20data%20recording%20of%20interneurons%20from%20human%20temporal%20neocortex]]
22 22  )))
23 23  )))
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