Wiki source code of Case studies for data reuse
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| 7 | This collab is under development, it is currently private. When the first case study is ready it will be made public. | ||
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10.1 | 10 | (% class="lead" id="HAcollectionofJupyternotebooksdemonstratinghowtomakeuseofEBRAINSdatasets" %) |
| 11 | A collection of Jupyter notebooks demonstrating how to make use of EBRAINS datasets | ||
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6.1 | 13 | Each case study consists of a Jupyter notebook, which shows how to obtain the data and metadata associated with a given dataset, shows how to read the datafile contents, and contains some example visualisations and analyses. |
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15.1 | 15 | Clicking on one of the links below will copy a notebook and any associated files to your home directory in the EBRAINS Lab so that you can save any changes you might make. All notebooks are made available under the [[Creative Commons Attribution Licence (CC-BY)>>https://creativecommons.org/licenses/by/4.0/]]. |
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7.1 | 17 | More case studies will be added over time, so please check back regularly. |
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9.1 | 19 | === List of case studies === |
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15.1 | 21 | * [[Salgueiro-Pereira & Marie: Excitability profile of CA1 pyramidal neurons in APPPS1 Alzheimer disease mice and control littermates>>https://lab.ebrains.eu/hub/user-redirect/git-pull?repo=https%3A%2F%2Fgithub.com%2FNeuroPSI-Neuroinformatics%2Fcase-studies-for-data-reuse&urlpath=lab%2Ftree%2Fcase-studies-for-data-reuse%2F10.25493-YJFW-HPY%2FSalgueiroPereiraMarie2020.ipynb&branch=main||rel=" noopener noreferrer" target="_blank"]] |
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6.1 | 22 | * [[Tognolina: Whole cell patch-clamp recordings of cerebellar granule cells>>doc:Tognolina: Whole cell patch-clamp recordings of cerebellar granule cells]] |
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13.2 | 23 | * [[Mansvelder: Physiological data recording of interneurons from human temporal neocortex>>https://wiki.ebrains.eu/bin/view/Collabs/case-studies-for-data-reuse/Mansvelder%3A%20Physiological%20data%20recording%20of%20interneurons%20from%20human%20temporal%20neocortex]] |
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