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13	13	~* For details on computation of the electrostatic potential see [[Calculate electrostatic potential>>doc:Collabs.computation-of-protein-association-rates.d.WebHome]].
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15		-~* For details on the similarity computations and [[pipsa algorithm>>doc:Collabs.computation-of-protein-association-rates.Compare a specific region of the electrostatic potentials surrounding a set of protein isoforms with multipipsa.WebHome]].
	15	+~* For details on the similarity computations and pipsa algorithm, see :ref:`el_multipipsa`
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17	17	== Input Data ==
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19		-In this use case, we use as our input structure a structure of the catalytic domain of the enzyme adenylyl cyclase 5 (AC5), modelled during the work described in [[Tong et al. (2016)>>https://doi.org/10.1002/prot.25167]]
	19	+In this use case, we use as our input structure a structure of the catalytic domain of the enzyme adenylyl cyclase 5 (AC5), modelled during the work described in |doi_tong|.
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21	21	The structures of the AC isoforms were created via homology modelling using the same template. The region where there are significant structural differences between the isoforms is in a flexible loop region that was not defined in the template structure. There are also variations in sequence length across AC isoforms in this region.
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42	42	== Related Jupyter Notebook ==
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44		-Please note: For technical reasons the notebooks currently are not running live in the collaboratory.
45		-
46	46	{{jupyterlink}}
47	47	https://lab.ebrains.eu/user-redirect/lab/tree/shared/Molecular%20Tools:%20protein%20association%20rates%20and%20binding%20sites/JN/Identify_potential_protein_binding_sites_of_a_set_of_protein_isoforms.ipynb
48	48	{{/jupyterlink}}