Changes for page data-curation-copy
Last modified by eapapp on 2023/07/04 16:46
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on 2023/05/06 20:41
on 2023/05/06 20:41
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... ... @@ -77,7 +77,7 @@ 77 77 78 78 Easily submit openMINDS-compatible metadata via our [[metadata wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. This form covers all the required metadata for sharing data via EBRAINS. When you're ready to 'Submit', the metadata and all uploaded files will be sent to the Curation team. 79 79 80 -For power-users interested in exploring the full span of the openMINDS framework, please check out the [[openMINDS GitHub>>https://github.com/HumanBrainProject/openMINDS]] to learn more about how to programmatically gather your metadata. A stable version of the openMINDS package can be found on [[PyPi>>https://pypi.org/project/openMINDS/]]. We accept openMINDS metadata as JSON-LD (share these with us via curation-support@ebrains.eu). Additional documentation of openMINDS metadata submodules and schemas can be found on [[the openMINDS GitHub Wiki>>https://humanbrainproject.github.io/openMINDS/]]. We have prepared [[a list of the metadata properties that are required>>https://drive.ebrains.eu/lib/47995dbc-f576-4008-a76c-eefbfd818529/file/ebrains-minimum-required-metadata.xlsx]] for publishing data on EBRAINS.80 +For power-users interested in exploring the full span of the openMINDS framework, please check out the [[openMINDS GitHub>>https://github.com/HumanBrainProject/openMINDS]] to learn more about how to programmatically gather your metadata. A stable version of the openMINDS package can be found on [[PyPi>>https://pypi.org/project/openMINDS/]]. We accept openMINDS metadata as JSON-LD (share these with us via curation-support@ebrains.eu). Additional documentation of openMINDS metadata submodules and schemas can be found on [[the openMINDS GitHub Wiki>>https://humanbrainproject.github.io/openMINDS/]]. 81 81 82 82 83 83 ==== **4. Write a Data Descriptor ** ==== ... ... @@ -163,67 +163,12 @@ 163 163 164 164 == **The curation team: meet the curators** == 165 165 166 - **LocatednNorway:**166 +[[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]] 167 167 168 - 169 -|(% style="width:303px" %)((( 170 -[[image:My project2.jpg]] 171 - 172 -**Archana Golla** 173 - 174 -Curation Scientist 175 - 176 -(% class="small" %)Neuroscience (PhD) 177 - 178 -Behavioral neuroscience and microscopy 179 -)))|(% style="width:303px" %)((( 180 -[[image:My project1.jpg]] 181 - 182 182 **Sophia Pieschnik** 169 +(% class="small" %)Biology (B.Sc.) 170 +Neurocognitive Psychology (M.Sc.) 183 183 184 -Curation Scientist 185 - 186 -(% class="small" %)Neurocognitive Psychology (M. Sc.) 187 -(% class="small" %)Neuroimaging 188 -)))|(% style="width:303px" %)((( 189 -[[image:My project (1).jpg]] 190 - 191 -**Ingrid Reiten** 192 - 193 -Curation Scientist, 194 -Phd Student 195 -(% class="small" %)Neuroscience (M. Sc.) 196 - 197 -(% class="small" %)Neuroanatomy and structural connectivity 198 -)))|(% style="width:303px" %)((( 199 -[[image:My project.jpg]] 200 - 201 -**Camilla H. Blixhavn** 202 - 203 -Curation Scientist, 204 -Phd Student 205 -(% class="small" %)Neuroscience (M. Sc.) 206 - 207 -(% class="small" %)Neuroanatomy and data integration 208 -))) 209 -|(% style="width:303px" %) |(% style="width:303px" %) |(% style="width:303px" %) |(% style="width:303px" %) 210 -|(% style="width:303px" %) |(% style="width:303px" %) |(% style="width:303px" %) |(% style="width:303px" %) 211 -|(% class="small" style="width:303px" %) |(% class="small" style="width:303px" %) |(% class="small" style="width:303px" %) |(% class="small" style="width:303px" %) 212 -|(% class="small" style="width:303px" %) |(% class="small" style="width:303px" %) |(% class="small" style="width:303px" %) |(% class="small" style="width:303px" %) 213 - 214 - 215 - 216 - 217 -**Located in Germany:** 218 - 219 -[[image:My project (2).jpg||height="289" width="231"]] 220 - 221 -**Jan Gündling** 222 - 223 -Curation Scientist 224 -(% class="small" %)Sensors and Cognitive Psychology (M. Sc.) 225 -Human-Computer Interaction 226 - 227 227 ---- 228 228 229 229 == **Information and resources for researchers looking to share data** == ... ... @@ -249,10 +249,10 @@ 249 249 250 250 EBRAINS supports further integration for a variety of data, and is continuously looking to increase the number of interoperable services. 251 251 252 -* Integrate image data with //the Mio viewer//: EBRAINSMulti-Image OpenSeadragon viewer providesan intuitive wayof navigating high-resolution 2D imageseries. It has browser-basedclassic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row andcolumns.See[[Mio viewer links available for thisdataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].253 -* Integrate atlas-registered 2D image data with //the Locali Zoom viewer//:TheEBRAINS LocaliZoomserialsection viewer displays seriesofregistered 2D sectionimageswith atlas overlay, allowingthe users to zoomintohigh-resolutionimages and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example.LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].197 +* Integrate image data with //the Mio viewer//: (% style="color:#e74c3c" %)[description] 198 +* Integrate atlas-registered 2D image data with //the Localizoom viewer//: (% style="color:#e74c3c" %)[description](%%). See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. 254 254 * Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description] 255 -* Integrate your data to //the Siibra//-explorer: The siibra-explorer isused forvisualizing volumetric brain data in all thebrainatlases provided by EBRAINS(Human, Monkey, Rat and Mouse). The siibra-explorervieweruses siibra-apito enablenavigation of brain region hierarchies, maps in different coordinate spaces, andlinked regional data features. Furthermore, it isconnectedwith theiibra toolsuiteproviding several analytical workflows. To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu.200 +* Integrate your data to //the atlas viewer Siibra//: (% style="color:#e74c3c" %)[description](%%). To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu. 256 256 257 257 ---- 258 258
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