Changes for page data-curation-copy

Last modified by eapapp on 2023/07/04 16:46
From version 127.1
edited by ingrreit
on 2023/05/09 12:46
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To version 61.1
edited by ingrreit
on 2023/04/25 17:39
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77 77  
78 78  Easily submit openMINDS-compatible metadata via our [[metadata wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. This form covers all the required metadata for sharing data via EBRAINS. When you're ready to 'Submit', the metadata and all uploaded files will be sent to the Curation team.
79 79  
80 -For power-users interested in exploring the full span of the openMINDS framework, please check out the [[openMINDS GitHub>>https://github.com/HumanBrainProject/openMINDS]] to learn more about how to programmatically gather your metadata. A stable version of the openMINDS package can be found on [[PyPi>>https://pypi.org/project/openMINDS/]]. We accept openMINDS metadata as JSON-LD (share these with us via curation-support@ebrains.eu). Additional documentation of openMINDS metadata submodules and schemas can be found on [[the openMINDS GitHub Wiki>>https://humanbrainproject.github.io/openMINDS/]]. We have prepared [[a list of the metadata properties that are required>>https://drive.ebrains.eu/lib/47995dbc-f576-4008-a76c-eefbfd818529/file/ebrains-minimum-required-metadata.xlsx]] for publishing data on EBRAINS.
80 +For power-users interested in exploring the full span of the openMINDS framework, please check out the [[openMINDS GitHub>>https://github.com/HumanBrainProject/openMINDS]] to learn more about how to programmatically gather your metadata. A stable version of the openMINDS package can be found on [[PyPi>>https://pypi.org/project/openMINDS/]]. We accept openMINDS metadata as JSON-LD (share these with us via curation-support@ebrains.eu). Additional documentation of openMINDS metadata submodules and schemas can be found on [[the openMINDS GitHub Wiki>>https://humanbrainproject.github.io/openMINDS/]].
81 81  
82 82  
83 83  ==== **4. Write a Data Descriptor ** ====
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125 125  
126 126  === Step by Step - Models ===
127 127  
128 -(% style="color:#e74c3c" %){{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-1rb0hn"/}}
129 -
130 130  [place-holder-process-diagram]
131 131  
132 132  ==== **1. model step 1 ** ====
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143 143  
144 144  === Step by Step - Code ===
145 145  
146 -(% style="color:#e74c3c" %)@Jan/Benni
147 -
148 148  [place-holder-process-diagram]
149 149  
150 150  ==== **1. code step 1 ** ====
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161 161  === Webservices and metadata models ===
162 162  
163 163  (% class="wikigeneratedid" id="HContact...." %)
164 -(% style="color:#e74c3c; font-size:16px" %){{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-np253c"/}}(% style="color:#4a5568; font-size:16px" %)
160 +(% style="color:#e74c3c; font-size:16px" %)Contact....(% style="color:#4a5568; font-size:16px" %)
165 165  
166 166  ----
167 167  
168 168  == **The curation team: meet the curators** ==
169 169  
170 -**Located in Norway:**
166 +[[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]]
171 171  
172 -|(% style="width:303px" %)(((
173 -[[image:My project2.jpg||height="209" width="167"]]
174 -
175 -**Archana Golla**
176 -
177 -(% class="small" %)Curation Scientist
178 -Neuroscience (PhD)(%%)
179 -(% class="small" style="color:#4a5568" %)**Behavioral neuroscience and microscopy**
180 -)))|(% style="width:303px" %)(((
181 -[[image:My project.jpg||height="209" width="167"]]
182 -
183 -**Camilla H. Blixhavn**
184 -
185 -(% class="small" %)Curation Scientist,
186 -Phd Student
187 -Neuroscience (M. Sc.)(%%)
188 -(% class="small" style="color:#4a5568" %)**Neuroanatomy and data integration**
189 -)))|(% style="width:303px" %)(((
190 -[[image:My project (1).jpg||height="209" width="167"]]
191 -
192 -**Ingrid Reiten**
193 -
194 -(% class="small" %)Curation Scientist,
195 -Phd Student
196 -Neuroscience (M. Sc.)(%%)
197 -(% class="small" style="color:#4a5568" %)**Neuroanatomy and structural connectivity**
198 -)))|(% style="width:303px" %)(((
199 -[[image:My project1.jpg||height="209" width="167"]]
200 -
201 201  **Sophia Pieschnik**
169 +(% class="small" %)Biology (B.Sc.)
170 +Neurocognitive Psychology (M.Sc.)
202 202  
203 -(% class="small" %)Curation Scientist
204 -Neurocognitive Psychology (M. Sc.)(%%)
205 -(% class="small" style="color:#4a5568" %)**Neuroimaging **
206 -)))
207 -
208 -
209 -
210 -**Located in Germany:**
211 -
212 -[[image:My project (2).jpg||height="209" width="167"]]
213 -
214 -**Jan Gündling**
215 -
216 -(% class="small" %)Curation Scientist
217 -Sensors and Cognitive Psychology (M. Sc.)(%%)
218 -(% class="small" style="color:#4a5568" %)**Human-Computer Interaction **
219 -
220 220  ----
221 221  
222 222  == **Information and resources for researchers looking to share data** ==
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227 227  
228 228  === **Improve your research product ** ===
229 229  
230 -(% class="wikigeneratedid" %)
231 -**{{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-fkdv6h"/}}**
232 -
233 233  ==== **Add a tutorial or learning resource to your research product ** ====
234 234  
235 235  ==== (% style="color:#e74c3c" %)- Learning resource [information](%%) ====
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241 241  
242 242  ----
243 243  
244 -=== **Integrate your data, models or software with other services** ===
193 +=== **Integrate your data on EBRAINS with other services** ===
245 245  
246 246  EBRAINS supports further integration for a variety of data, and is continuously looking to increase the number of interoperable services.
247 247  
248 -* Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].
249 -* Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].
250 -* Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description] {{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-62mbgl"/}}
251 -* Integrate your data to //the Siibra//-explorer: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu.
197 +* Integrate image data with //the Mio viewer//: (% style="color:#e74c3c" %)[description]
198 +* Integrate atlas-registered 2D image data with //the Localizoom viewer//: (% style="color:#e74c3c" %)[description](%%). See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example.
199 +* Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description]
200 +* Integrate your data to //the atlas viewer Siibra//: (% style="color:#e74c3c" %)[description](%%). To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu.
252 252  
253 253  ----
254 254  
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334 334  
335 335  
336 336  {{putFootnotes/}}
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