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1		-XWiki.ingrreit
	1	+XWiki.spieschnik

Content

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99	99
100	100	==== **Sharing human data ** ====
101	101
	102	+We must ensure data shared on EBRAINS comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
	103	+
102	102	(% class="box floatinginfobox" %)
103	103	(((
104	104	For **Human subject data**, the data must be //either//
105	105
106	106	- Post-mortem data
	109	+
107	107	- Aggregated data
	111	+
108	108	- Pseudonymized subject data with a legal basis for sharing (e.g. Informed Consent)
109	109
110	110	(% class="small" %)//If you have human data that do not classify as any of the above, please get in touch and we will clarify the available options. //
111	111	)))
112	112
113		-We must ensure data shared on EBRAINS comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
	117	+Pseudonymized data is shared via the Human Data Gateway (HDG) due to GDPR regulations. The HDG adds an authentication layer to the data.
114	114
115		-Post-mortem and aggregated human data can be shared openly. Pseudonymized data is shared via the Human Data Gateway (HDG) due to GDPR regulations. The HDG adds an authentication layer to the data.
116		-
117	117	**Data users** must request access to the data (via their EBRAINS account) and will receive access provided they actively accept the [[EBRAINS Access Policy>>https://ebrains.eu/terms#access-policy]], the [[EBRAINS General Terms of Use>>https://ebrains.eu/terms#general-terms-of-use]], and the [[EBRAINS Data Use Agreement>>https://ebrains.eu/terms#data-use-agreement]]. The account holder also have to accept that information about their request and access to specific data under HDG is being tracked and stored.
118	118	\\**Data owners** must be aware that sharing under the HDG affects the legal responsibilities for the data. They must agree to joint control of the data (see the [[Data Provision Protocol v1>>url:https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]], section 1.4 - 1.5) and the Data Protection Officers of the responsible institutions must have accepted that the data can be shared under HDG.
119	119	\\The Human Data Gateway (HDG) was introduced in February 2021 and developed across multiple teams in the HBP. The initiative to create the service and the initial design originated from EBRAINS Curation in close collaboration with the Data compliance team and the HBP Data Governance Working Group. HDG is a response to the needs of multiple data providers who are bringing data of human origin to EBRAINS. HDG covers the sharing of a limited range of data of human origin, i.e., data without direct identifiers and with very few indirect identifiers (strongly pseudonymized, de-identified). It is an extension of the existing services and does not replace the future EBRAINS Service for sensitive data (planned for 2024) which is outside the domain of the current EBRAINS Data and Knowledge services.
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123	123
124	124	=== Step by Step - Models ===
125	125
126		-(% style="color:#e74c3c" %){{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-1rb0hn"/}}
127		-
128	128	[place-holder-process-diagram]
129	129
130	130	==== **1. model step 1 ** ====
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141	141
142	142	=== Step by Step - Code ===
143	143
144		-(% style="color:#e74c3c" %)@Jan/Benni
145		-
146	146	[place-holder-process-diagram]
147	147
148	148	==== **1. code step 1 ** ====
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159	159	=== Webservices and metadata models ===
160	160
161	161	(% class="wikigeneratedid" id="HContact...." %)
162		-(% style="color:#e74c3c; font-size:16px" %){{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-np253c"/}}(% style="color:#4a5568; font-size:16px" %)
	160	+(% style="color:#e74c3c; font-size:16px" %)Contact....(% style="color:#4a5568; font-size:16px" %)
163	163
164	164	----
165	165
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184	184	Phd Student
185	185	Neuroscience (M. Sc.)(%%)
186	186	(% class="small" style="color:#4a5568" %)**Neuroanatomy and data integration**
187		-)))|(% style="width:303px" %)(((
	185	+)))| (% style="width:303px" %)
	186	+(((
188	188	[[image:My project (1).jpg||height="209" width="167"]]
189	189
190	190	**Ingrid Reiten**
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193	193	Phd Student
194	194	Neuroscience (M. Sc.)(%%)
195	195	(% class="small" style="color:#4a5568" %)**Neuroanatomy and structural connectivity**
196		-)))|(% style="width:303px" %)(((
	195	+)))| (% style="width:303px" %)
	196	+(((
197	197	[[image:My project1.jpg||height="209" width="167"]]
198	198
199	199	**Sophia Pieschnik**
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204	204	)))
205	205
206	206
207		-\\**Located in Germany:**
	207	+
	208	+**Located in Germany:**
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209	209	[[image:My project (2).jpg||height="209" width="167"]]
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224	224
225	225	=== **Improve your research product ** ===
226	226
227		-(% class="wikigeneratedid" %)
228		-**{{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-fkdv6h"/}}**
229		-
230	230	==== **Add a tutorial or learning resource to your research product ** ====
231	231
232	232	==== (% style="color:#e74c3c" %)- Learning resource [information](%%) ====
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244	244
245	245	* Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].
246	246	* Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].
247		-* Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description] {{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-62mbgl"/}}
	245	+* Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description]
248	248	* Integrate your data to //the Siibra//-explorer: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu.
249	249
250	250	----