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1		-XWiki.jan
	1	+XWiki.spieschnik

Content

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99	99
100	100	==== **Sharing human data ** ====
101	101
	102	+We must ensure data shared on EBRAINS comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
	103	+
102	102	(% class="box floatinginfobox" %)
103	103	(((
104	104	For **Human subject data**, the data must be //either//
105	105
106	106	- Post-mortem data
	109	+
107	107	- Aggregated data
	111	+
108	108	- Pseudonymized subject data with a legal basis for sharing (e.g. Informed Consent)
109	109
110	110	(% class="small" %)//If you have human data that do not classify as any of the above, please get in touch and we will clarify the available options. //
111	111	)))
112	112
113		-We must ensure data shared on EBRAINS comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
	117	+Pseudonymized data is shared via the Human Data Gateway (HDG) due to GDPR regulations. The HDG adds an authentication layer to the data.
114	114
115		-Post-mortem and aggregated human data can be shared openly. Pseudonymized data is shared via the Human Data Gateway (HDG) due to GDPR regulations. The HDG adds an authentication layer to the data.
116		-
117	117	**Data users** must request access to the data (via their EBRAINS account) and will receive access provided they actively accept the [[EBRAINS Access Policy>>https://ebrains.eu/terms#access-policy]], the [[EBRAINS General Terms of Use>>https://ebrains.eu/terms#general-terms-of-use]], and the [[EBRAINS Data Use Agreement>>https://ebrains.eu/terms#data-use-agreement]]. The account holder also have to accept that information about their request and access to specific data under HDG is being tracked and stored.
118	118	\\**Data owners** must be aware that sharing under the HDG affects the legal responsibilities for the data. They must agree to joint control of the data (see the [[Data Provision Protocol v1>>url:https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]], section 1.4 - 1.5) and the Data Protection Officers of the responsible institutions must have accepted that the data can be shared under HDG.
119	119	\\The Human Data Gateway (HDG) was introduced in February 2021 and developed across multiple teams in the HBP. The initiative to create the service and the initial design originated from EBRAINS Curation in close collaboration with the Data compliance team and the HBP Data Governance Working Group. HDG is a response to the needs of multiple data providers who are bringing data of human origin to EBRAINS. HDG covers the sharing of a limited range of data of human origin, i.e., data without direct identifiers and with very few indirect identifiers (strongly pseudonymized, de-identified). It is an extension of the existing services and does not replace the future EBRAINS Service for sensitive data (planned for 2024) which is outside the domain of the current EBRAINS Data and Knowledge services.
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123	123
124	124	=== Step by Step - Models ===
125	125
126		-(% style="color:#e74c3c" %){{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-1rb0hn"/}}
127		-
128	128	[place-holder-process-diagram]
129	129
130	130	==== **1. model step 1 ** ====
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141	141
142	142	=== Step by Step - Code ===
143	143
144		-(% style="color:#e74c3c" %)@Jan/Benni
145		-
146	146	[place-holder-process-diagram]
147	147
148		-
	146	+==== **1. code step 1 ** ====
149	149
150		-1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]].
151		-1. One of our creators will then open a ticket and contact you with futher instructions. In these instructions you will find the links to your software and software version entries in the Knowledge Graph.
152		-1. In the next step you need to enter the metadata of your software in the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided in the ticket. The links will lead you to the space in the KG, which was created especially for you. You can start directly with the editing of your software. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support.
153		-1. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary.
154		-1. After a quality check, we integrate and publish the information to the Knowledge Graph. Your software is then searchable and usable for the neuroscience community.
	148	+Text
155	155
	150	+
	151	+==== **2. code step 2** ====
	152	+
	153	+Text
	154	+
156	156	----
157	157
158	158	=== Webservices and metadata models ===
159	159
160	160	(% class="wikigeneratedid" id="HContact...." %)
161		-(% style="color:#e74c3c; font-size:16px" %){{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-np253c"/}}(% style="color:#4a5568; font-size:16px" %)
	160	+(% style="color:#e74c3c; font-size:16px" %)Contact....(% style="color:#4a5568; font-size:16px" %)
162	162
163	163	----
164	164
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183	183	Phd Student
184	184	Neuroscience (M. Sc.)(%%)
185	185	(% class="small" style="color:#4a5568" %)**Neuroanatomy and data integration**
186		-)))|(% style="width:303px" %)(((
	185	+)))| (% style="width:303px" %)
	186	+(((
187	187	[[image:My project (1).jpg||height="209" width="167"]]
188	188
189	189	**Ingrid Reiten**
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192	192	Phd Student
193	193	Neuroscience (M. Sc.)(%%)
194	194	(% class="small" style="color:#4a5568" %)**Neuroanatomy and structural connectivity**
195		-)))|(% style="width:303px" %)(((
	195	+)))| (% style="width:303px" %)
	196	+(((
196	196	[[image:My project1.jpg||height="209" width="167"]]
197	197
198	198	**Sophia Pieschnik**
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203	203	)))
204	204
205	205
206		-\\**Located in Germany:**
	207	+
	208	+**Located in Germany:**
207	207
208	208	[[image:My project (2).jpg||height="209" width="167"]]
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223	223
224	224	=== **Improve your research product ** ===
225	225
226		-(% class="wikigeneratedid" %)
227		-**{{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-fkdv6h"/}}**
228		-
229	229	==== **Add a tutorial or learning resource to your research product ** ====
230	230
231	231	==== (% style="color:#e74c3c" %)- Learning resource [information](%%) ====
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243	243
244	244	* Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].
245	245	* Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].
246		-* Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description] {{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-62mbgl"/}}
	245	+* Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description]
247	247	* Integrate your data to //the Siibra//-explorer: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu.
248	248
249	249	----