Changes for page data-curation-copy

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edited by jan
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edited by ingrreit
on 2023/06/05 09:28
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1 1  == Publishing neuroscience data, models and software via EBRAINS ==
2 2  
3 -The aim of this collab is to provide you with all the information you need to publish your experimental data, simulations, computational models, and software via EBRAINS. Have you already published your data somewhere else? You can increase the exposure and impact of your shared dataset by also listing it on EBRAINS.
4 4  
4 +(% class="wikigeneratedid" %)
5 +The aim of this collab is to provide you with detailed information about publishing data, simulations, computational models, and software via EBRAINS. If you want a quick overview of the sharing process, see [[https:~~/~~/ebrains.eu/service/share-data>>https://ebrains.eu/service/share-data]].
6 +
5 5  {{box title="**Contents**"}}
6 6  {{toc depth="3" start="2"/}}
7 7  {{/box}}
8 8  
9 9  
12 +== **Information to get started** ==
13 +
10 10  (% style="text-align: center;" %)
11 11  **Get started! **
12 12  
13 13  (% style="text-align: center;" %)
14 -**[[REQUEST CURATION>>https://nettskjema.no/a/277393#/]] **
18 +**[[REQUEST CURATION>>https://nettskjema.no/a/277393#/]] to share data, simulations, computational models, and software, - or to add a new version of an existing one. **
15 15  
16 16  (% style="text-align: center;" %)
17 - Search existing data, models and software in [[the EBRAINS Knowledge Graph Search>>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]]
21 +Have you already published your data somewhere else? You can increase the exposure and impact of your shared dataset by also listing it on EBRAINS.
18 18  
19 19  
20 -----
24 +(% style="text-align: center;" %)
25 +Search existing data, models and software in [[the EBRAINS Knowledge Graph Search>>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]]
21 21  
22 -== **The EBRAINS curation process** ==
23 23  
28 +EBRAINS accepts data from all modalities and from all species, as well as models, software, web services and metadata models (collectively referred to as research products) for sharing. You'll find detailed information about how to share each research product below. 
29 +
30 +
31 +(% class="box infomessage" %)
32 +(((
33 +We strongly recommend to **start preparing for data sharing as early as possible**. With a structured data repository and adequate notes on how the data was acquired, you greatly minimize the effort required to publish your data. The time it takes to share data on EBRAINS heavily depends on on the engagement from the researcher and how well the data and metadata is prepared before-hand. Contact us for personalised guidance on how to prepare for sharing.
34 +)))
35 +
24 24  (% class="box successmessage" %)
25 25  (((
26 -EBRAINS accepts **experimental data,** of all modalities and from all species, **models**, **software**, **web services **and **metadata models**. You'll find detailed information about each research product below.
38 +**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases
27 27  )))
28 28  
41 +----
42 +
43 +== **The EBRAINS curation process** ==
44 +
29 29  In EBRAINS, multimodal and heterogenous neuroscience data, models and software are categorised and described in a standardised manner so that they can be effectively searched, compared, and analysed. This effort is referred to as curation. 
30 30  
31 31  >The EBRAINS curation process involves organising and annotating neuroscientific data to make the data discoverable and reusable.
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32 32  
33 33  Behind this process is the EBRAINS Curation team. Our mandate is to support you in sharing your data in line with the [[**FAIR principles**>>https://www.go-fair.org/fair-principles/]], whether you choose to describe only the key aspects of your data, or can invest in adding more detailed metadata.
34 34  
35 -Curated data, models and software are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and programmatically via the [[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadata schemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]].Data and models are linked to and discoverable via the species-specific [[EBRAINS siibra atlas viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]].
51 +Curated data, models and software are made available in [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and the [[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadata schemas defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]].Data and models are linked to and discoverable via the species-specific [[EBRAINS siibra atlas viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]].
36 36  
53 +The curation of data, models and software is different. Thus, below we explain the process for sharing for each research product separately.
37 37  
38 -(% class="box infomessage" %)
39 -(((
40 -**We strongly recommend to start preparing for data sharing as early as possible.** With a structured data repository and adequate notes on how the data was acquired, you greatly minimize the effort required to publish your data. The time it takes to share data on EBRAINS heavily depends on on the engagement from the researcher and how well the data and metadata is prepared before-hand. **[[Contact us for personalised guidance on how to prepare for sharing>>mailto:curation-support@ebrains.eu]]. **
41 -)))
42 42  
43 -(% class="box successmessage" %)
44 -(((
45 -**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases.
46 -)))
47 -
48 48  ----
49 49  
50 50  === Step by step - Experimental data ===
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141 141  
142 142  === Step by Step - Code ===
143 143  
144 -[[[[image:swc-flow.png]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]
152 +[[[[image:swc-flow-no-header.png||alt="swc-flow.png"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
145 145  
146 146  1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]].[[[[image:Thumb.png||alt="EBRAINS-Share-Software.pdf" height="377" style="float:right" width="257"]]>>attach:EBRAINS-Share-Software.pdf]]
147 147  1. One of our creators will then open a ticket and contact you with futher instructions. In these instructions you will find the links to your software and software version entries in the Knowledge Graph.
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174 174  Neuroscience (PhD)(%%)
175 175  (% class="small" style="color:#4a5568" %)**Behavioral neuroscience and microscopy**
176 176  )))|(% style="width:303px" %)(((
177 -[[image:My project.jpg||height="209" width="167"]]
185 +[[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]]
178 178  
179 179  **Camilla H. Blixhavn**
180 180  
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201 201  (% class="small" style="color:#4a5568" %)**Neuroimaging **
202 202  )))
203 203  
204 -
212 +|(% style="width:303px" %)(((
213 +[[image:My project.jpg||height="209" width="167"]]
214 +
215 +**Heidi Kleven**
216 +
217 +(% class="small" %)Curation Scientist,
218 +Phd Student
219 +Neuroscience (M. Sc.)(%%)
220 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and brain atlases**
221 +)))| | |
222 +
223 +
205 205  \\**Located in Germany:**
206 206  
226 +|(% style="width:303px" %)(((
207 207  [[image:My project (2).jpg||height="209" width="167"]]
208 208  
209 209  **Jan Gündling**
210 210  
211 -(% class="small" %)Curation Scientist
231 +(% class="small" %)Curation Scientist,
212 212  Phd Student
213 213  Sensors and Cognitive Psychology (M. Sc.)(%%)
214 -(% class="small" style="color:#4a5568" %)**Human-Computer Interaction **
234 +(% class="small" style="color:#4a5568" %)**Human-Computer Interaction**
235 +)))|(% style="width:303px" %)(((
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215 215  
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243 +
244 +
245 +
246 +
247 +
248 +**Lyuba Zehl**
249 +
250 +(% class="small" %)Knowledge Systems Engineer
251 +Dr. rer. nat. (Systems Neuroscience)(%%)
252 +(% class="small" style="color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
253 +)))|(% style="width:303px" %) |
254 +
216 216  ----
217 217  
218 218  == **Information and resources for researchers looking to share data** ==
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