Attention: The Collaboratory IAM will down for up to 1 hour on Monday, the 7th of July 2025 starting from 5pm CEST (my timezone) for up to 1 hour. Any and all services, which require a user login with an EBRAINS account, will be un-available during that time


Changes for page data-curation-copy

Last modified by eapapp on 2023/07/04 16:46
From version 146.2
edited by ingrreit
on 2023/06/05 09:23
Change comment: There is no comment for this version
To version 44.1
edited by ingrreit
on 2023/04/03 12:00
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -1,65 +1,45 @@
1 -== Publishing neuroscience data, models and software via EBRAINS ==
1 +== Publishing data, models and software via EBRAINS ==
2 2  
3 +The aim of this collab is to provide you with all the information you need to publish your experimental data, simulations, computational models, and software via EBRAINS. Have you already published your data somewhere else? You can increase the exposure and impact of your shared dataset by also listing it on EBRAINS.
3 3  
4 -(% class="wikigeneratedid" %)
5 -The aim of this collab is to provide you with detailed information about publishing data, simulations, computational models, and software via EBRAINS. If you want a quick overview of the sharing process, see [[https:~~/~~/ebrains.eu/service/share-data>>https://ebrains.eu/service/share-data]].
6 -
7 7  {{box title="**Contents**"}}
8 8  {{toc depth="3" start="2"/}}
9 9  {{/box}}
10 10  
11 11  
12 -== **Information to get started** ==
10 +(% style="text-align: center;" %)
11 +**Get started! **
13 13  
14 -**Get started! [[REQUEST CURATION>>https://nettskjema.no/a/277393#/]] to share data, simulations, computational models, and software, - or a new version of an existing one. **
13 +(% style="text-align: center;" %)
14 +**[[REQUEST CURATION>>https://nettskjema.no/a/277393#/]] **
15 15  
16 -Have you already published your data somewhere else? You can increase the exposure and impact of your shared dataset by also listing it on EBRAINS.
16 +(% style="text-align: center;" %)
17 + Search existing data, models and software in [[the EBRAINS Knowledge Graph Search>>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]]
17 17  
18 18  
19 -Search existing data, models and software in [[the EBRAINS Knowledge Graph Search>>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]]
20 +----
20 20  
22 +== **The EBRAINS curation process** ==
21 21  
22 -EBRAINS accepts data from all modalities and from all species, as well as models, software, web services and metadata models (collectively referred to as research products) for sharing. You'll find detailed information about how to share each research product below. 
23 -
24 +In EBRAINS, multimodal and heterogenous neuroscience data, models and software are categorised and described in a standardised manner so that they can be effectively searched, compared, and analysed. This effort is referred to as curation. 
24 24  
25 -(% class="box infomessage" %)
26 -(((
27 -We strongly recommend to **start preparing for data sharing as early as possible**. With a structured data repository and adequate notes on how the data was acquired, you greatly minimize the effort required to publish your data. The time it takes to share data on EBRAINS heavily depends on on the engagement from the researcher and how well the data and metadata is prepared before-hand. Contact us for personalised guidance on how to prepare for sharing.
28 -)))
26 +>The EBRAINS curation process involves organising and annotating neuroscientific data to make the data discoverable and reusable.
29 29  
30 -(% class="box successmessage" %)
31 -(((
32 -**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases
33 -)))
34 34  
35 -----
29 +Behind this process is the EBRAINS Curation team. Our mandate is to support you in sharing your data in line with the [[**FAIR principles**>>https://www.go-fair.org/fair-principles/]], whether you choose to describe only the key aspects of your data, or can invest in adding more detailed metadata.
36 36  
37 -== **The EBRAINS curation process** ==
38 38  
39 -(% class="box successmessage" %)
32 +(% class="box floatinginfobox" %)
40 40  (((
41 -EBRAINS accepts **experimental data,** of all modalities and from all species, **models**, **software**, **web services **and **metadata models**. You'll find detailed information about each research product below.
34 +**We strongly recommend to start preparing for data sharing as early as possible.** With a structured data repository and adequate notes on how the data was acquired, you greatly minimize the effort required to publish your data. The time it takes to share data on EBRAINS heavily depends on on the engagement from the researcher and how well the data and metadata is prepared before-hand. **[[Contact us for personalised guidance on how to prepare for sharing>>mailto:curation-support@ebrains.eu]]. **
42 42  )))
43 43  
44 -In EBRAINS, multimodal and heterogenous neuroscience data, models and software are categorised and described in a standardised manner so that they can be effectively searched, compared, and analysed. This effort is referred to as curation. 
45 45  
46 ->The EBRAINS curation process involves organising and annotating neuroscientific data to make the data discoverable and reusable.
47 47  
48 -Behind this process is the EBRAINS Curation team. Our mandate is to support you in sharing your data in line with the [[**FAIR principles**>>https://www.go-fair.org/fair-principles/]], whether you choose to describe only the key aspects of your data, or can invest in adding more detailed metadata.
49 49  
50 -Curated data, models and software are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and programmatically via the [[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadata schemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]].Data and models are linked to and discoverable via the species-specific [[EBRAINS siibra atlas viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]].
51 51  
52 52  
53 -(% class="box infomessage" %)
54 -(((
55 -
56 -)))
57 57  
58 -(% class="box successmessage" %)
59 -(((
60 -
61 -)))
62 -
63 63  ----
64 64  
65 65  === Step by step - Experimental data ===
... ... @@ -92,7 +92,7 @@
92 92  
93 93  Easily submit openMINDS-compatible metadata via our [[metadata wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. This form covers all the required metadata for sharing data via EBRAINS. When you're ready to 'Submit', the metadata and all uploaded files will be sent to the Curation team.
94 94  
95 -For power-users interested in exploring the full span of the openMINDS framework, please check out the [[openMINDS GitHub>>https://github.com/HumanBrainProject/openMINDS]] to learn more about how to programmatically gather your metadata. A stable version of the openMINDS package can be found on [[PyPi>>https://pypi.org/project/openMINDS/]]. We accept openMINDS metadata as JSON-LD (share these with us via curation-support@ebrains.eu). Additional documentation of openMINDS metadata submodules and schemas can be found on [[the openMINDS GitHub Wiki>>https://humanbrainproject.github.io/openMINDS/]]. We have prepared [[a list of the metadata properties that are required>>https://drive.ebrains.eu/lib/47995dbc-f576-4008-a76c-eefbfd818529/file/ebrains-minimum-required-metadata.xlsx]] for publishing data on EBRAINS.
75 +For power-users interested in exploring the full span of the openMINDS framework, please check out the [[openMINDS GitHub>>https://github.com/HumanBrainProject/openMINDS]] to learn more about how to programmatically gather your metadata. A stable version of the openMINDS package can be found on [[PyPi>>https://pypi.org/project/openMINDS/]]. We accept openMINDS metadata as JSON-LD (share these with us via curation-support@ebrains.eu). Additional documentation of openMINDS metadata submodules and schemas can be found on [[the openMINDS GitHub Wiki>>https://humanbrainproject.github.io/openMINDS/]].
96 96  
97 97  
98 98  ==== **4. Write a Data Descriptor ** ====
... ... @@ -114,21 +114,23 @@
114 114  
115 115  ==== **Sharing human data ** ====
116 116  
97 +We must ensure data shared on EBRAINS comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
98 +
117 117  (% class="box floatinginfobox" %)
118 118  (((
119 119  For **Human subject data**, the data must be //either//
120 120  
121 121  - Post-mortem data
104 +
122 122  - Aggregated data
106 +
123 123  - Pseudonymized subject data with a legal basis for sharing (e.g. Informed Consent)
124 124  
125 125  (% class="small" %)//If you have human data that do not classify as any of the above, please get in touch and we will clarify the available options. //
126 126  )))
127 127  
128 -We must ensure data shared on EBRAINS comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
112 +Pseudonymized data is shared via the Human Data Gateway (HDG) due to GDPR regulations. The HDG adds an authentication layer to the data.
129 129  
130 -Post-mortem and aggregated human data can be shared openly. Pseudonymized data is shared via the Human Data Gateway (HDG) due to GDPR regulations. The HDG adds an authentication layer to the data.
131 -
132 132  **Data users** must request access to the data (via their EBRAINS account) and will receive access provided they actively accept the [[EBRAINS Access Policy>>https://ebrains.eu/terms#access-policy]], the [[EBRAINS General Terms of Use>>https://ebrains.eu/terms#general-terms-of-use]], and the [[EBRAINS Data Use Agreement>>https://ebrains.eu/terms#data-use-agreement]]. The account holder also have to accept that information about their request and access to specific data under HDG is being tracked and stored.
133 133  \\**Data owners** must be aware that sharing under the HDG affects the legal responsibilities for the data. They must agree to joint control of the data (see the [[Data Provision Protocol v1>>url:https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]], section 1.4 - 1.5) and the Data Protection Officers of the responsible institutions must have accepted that the data can be shared under HDG.
134 134  \\The Human Data Gateway (HDG) was introduced in February 2021 and developed across multiple teams in the HBP. The initiative to create the service and the initial design originated from EBRAINS Curation in close collaboration with the Data compliance team and the HBP Data Governance Working Group. HDG is a response to the needs of multiple data providers who are bringing data of human origin to EBRAINS. HDG covers the sharing of a limited range of data of human origin, i.e., data without direct identifiers and with very few indirect identifiers (strongly pseudonymized, de-identified). It is an extension of the existing services and does not replace the future EBRAINS Service for sensitive data (planned for 2024) which is outside the domain of the current EBRAINS Data and Knowledge services.
... ... @@ -138,8 +138,6 @@
138 138  
139 139  === Step by Step - Models ===
140 140  
141 -(% style="color:#e74c3c" %){{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-1rb0hn"/}}
142 -
143 143  [place-holder-process-diagram]
144 144  
145 145  ==== **1. model step 1 ** ====
... ... @@ -156,109 +156,25 @@
156 156  
157 157  === Step by Step - Code ===
158 158  
159 -[[[[image:swc-flow-no-header.png||alt="swc-flow.png"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
139 +[place-holder-process-diagram]
160 160  
161 -1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]].[[[[image:Thumb.png||alt="EBRAINS-Share-Software.pdf" height="377" style="float:right" width="257"]]>>attach:EBRAINS-Share-Software.pdf]]
162 -1. One of our creators will then open a ticket and contact you with futher instructions. In these instructions you will find the links to your software and software version entries in the Knowledge Graph.
163 -1. In the next step you need to enter the metadata of your software in the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided in the ticket. The links will lead you to the space in the KG, which was created especially for you. You can start directly with the editing of your software. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support.
164 -1. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary.
165 -1. After a quality check, we integrate and publish the information to the Knowledge Graph. Your software is then searchable and usable for the neuroscience community.
141 +==== **1. code step 1 ** ====
166 166  
167 -If you want to add a new version to an already curated software, please write to [[curation-support@humanbrainproject.eu>>path:mailto:curation-support@humanbrainproject.eu]] or open a ticket at [[https:~~/~~/support.humanbrainproject.eu/.>>url:https://support.humanbrainproject.eu/]]
168 -For more information, visit our [[guide>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]].
143 +Text
169 169  
170 -----
171 171  
172 -=== Webservices and metadata models ===
146 +==== **2. code step 2** ====
173 173  
174 -(% class="wikigeneratedid" id="HContact...." %)
175 -(% style="color:#e74c3c; font-size:16px" %){{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-np253c"/}}(% style="color:#4a5568; font-size:16px" %)
148 +Text
176 176  
177 177  ----
178 178  
179 -== **The curation team: meet the curators** ==
152 +=== Output / result, when you've completed the curation process, what do you get ===
180 180  
181 -**Located in Norway:**
154 +Curated data, models and software are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and programmatically via the [[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadata schemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]].
182 182  
183 -|(% style="width:303px" %)(((
184 -[[image:My project2.jpg||height="209" width="167"]]
156 +Data and models are linked to and discoverable via the species-specific [[EBRAINS Interactive Atlas Viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]].
185 185  
186 -**Archana Golla**
187 -
188 -(% class="small" %)Curation Scientist
189 -Neuroscience (PhD)(%%)
190 -(% class="small" style="color:#4a5568" %)**Behavioral neuroscience and microscopy**
191 -)))|(% style="width:303px" %)(((
192 -[[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]]
193 -
194 -**Camilla H. Blixhavn**
195 -
196 -(% class="small" %)Curation Scientist,
197 -Phd Student
198 -Neuroscience (M. Sc.)(%%)
199 -(% class="small" style="color:#4a5568" %)**Neuroanatomy and data integration**
200 -)))|(% style="width:303px" %)(((
201 -[[image:My project (1).jpg||height="209" width="167"]]
202 -
203 -**Ingrid Reiten**
204 -
205 -(% class="small" %)Curation Scientist,
206 -Phd Student
207 -Neuroscience (M. Sc.)(%%)
208 -(% class="small" style="color:#4a5568" %)**Neuroanatomy and structural connectivity**
209 -)))|(% style="width:303px" %)(((
210 -[[image:My project1.jpg||height="209" width="167"]]
211 -
212 -**Sophia Pieschnik**
213 -
214 -(% class="small" %)Curation Scientist
215 -Neurocognitive Psychology (M. Sc.)(%%)
216 -(% class="small" style="color:#4a5568" %)**Neuroimaging **
217 -)))
218 -
219 -|(% style="width:303px" %)(((
220 -[[image:My project.jpg||height="209" width="167"]]
221 -
222 -**Heidi Kleven**
223 -
224 -(% class="small" %)Curation Scientist,
225 -Phd Student
226 -Neuroscience (M. Sc.)(%%)
227 -(% class="small" style="color:#4a5568" %)**Neuroanatomy and brain atlases**
228 -)))| | |
229 -
230 -
231 -\\**Located in Germany:**
232 -
233 -|(% style="width:303px" %)(((
234 -[[image:My project (2).jpg||height="209" width="167"]]
235 -
236 -**Jan Gündling**
237 -
238 -(% class="small" %)Curation Scientist,
239 -Phd Student
240 -Sensors and Cognitive Psychology (M. Sc.)(%%)
241 -(% class="small" style="color:#4a5568" %)**Human-Computer Interaction**
242 -)))|(% style="width:303px" %)(((
243 -
244 -
245 -
246 -
247 -
248 -
249 -
250 -
251 -
252 -
253 -
254 -
255 -**Lyuba Zehl**
256 -
257 -(% class="small" %)Knowledge Systems Engineer
258 -Dr. rer. nat. (Systems Neuroscience)(%%)
259 -(% class="small" style="color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
260 -)))|(% style="width:303px" %) |
261 -
262 262  ----
263 263  
264 264  == **Information and resources for researchers looking to share data** ==
... ... @@ -267,60 +267,58 @@
267 267  
268 268  ----
269 269  
270 -=== **Improve your research product ** ===
166 +=== **The benefits of sharing data ** ===
271 271  
272 -(% class="wikigeneratedid" %)
273 -**{{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-fkdv6h"/}}**
168 +(% style="color:#000000" %)Sharing your data, models or code (research products) via EBRAINS makes it discoverable amongst other research products available in the (%%)[[(% style="color:#000000" %)EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]](%%). This is made possible by the highly flexible metadata framework describing neuroscience data in detail.
274 274  
275 -==== **Add a tutorial or learning resource to your research product ** ====
170 +(% style="color:#000000" %)EBRAINS is gradually implementing interconnected tools and analysis workflows developed in the Human Brain Project (HBP) to further enhance the output from adding your dataset to the database.
276 276  
277 -==== (% style="color:#e74c3c" %)- Learning resource [information](%%) ====
278 278  
173 +By sharing your data via EBRAINS, you gain access to the following benefits:
279 279  
280 -==== **Create a workflow for .... ? ** ====
175 +[[image:image-20230324170841-3.png]]
281 281  
282 -==== (% style="color:#e74c3c" %)- Workflows [information](%%) ====
283 283  
284 -----
285 285  
286 -=== **Integrate your data, models or software with other services** ===
179 +We support you to better follow the FAIR^^ ^^guiding principles for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.  Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product.
287 287  
288 -EBRAINS supports further integration for a variety of data, and is continuously looking to increase the number of interoperable services.
289 289  
290 -* Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].
291 -* Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].
292 -* Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description] {{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-62mbgl"/}}
293 -* Integrate your data to //the Siibra//-explorer: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu.
294 -
295 295  ----
296 296  
297 -=== **The benefits of sharing data ** ===
184 +(% style="font-family:inherit" %) (% style="color:#1a202c; font-family:inherit; font-size:26px" %)**What can I share on EBRAINS? **
298 298  
299 -(% style="color:#000000" %)Sharing your data, models or code (research products) via EBRAINS makes it discoverable amongst other research products available in the (%%)[[(% style="color:#000000" %)EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]](%%). This is made possible by the highly flexible metadata framework describing neuroscience data in detail.
186 +(% class="wikigeneratedid" id="H" %)
187 +[[image:image-20230324170829-2.png]]
300 300  
301 -(% style="color:#000000" %)EBRAINS is gradually implementing interconnected tools and analysis workflows developed in the Human Brain Project (HBP) to further enhance the output from adding your dataset to the database.
302 302  
190 +----
303 303  
304 -By sharing your data via EBRAINS, you gain access to the following benefits:
192 +=== **At a glance: "Sharing experimental data on EBRAINS" ** ===
305 305  
306 -[[image:image-20230324170841-3.png]]
307 307  
195 +|(% style="width:593px" %)(((
196 +[[[[image:image-20230324171114-2.png]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
197 +)))|(% style="width:1240px" %)(((
198 +[[[[image:image-20230324171109-1.png]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
199 +)))
200 +|(% style="width:593px" %)//Collection of useful information for researchers looking to share experimental data on EBRAINS.//|(% style="width:1240px" %)//The EBRAINS data descriptor//
308 308  
202 +=== **Introduction to data organisation ** ===
309 309  
310 -We support you to better follow the FAIR^^ ^^guiding principles for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.  Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product.
204 +Have you ever experienced not being able to find a file that you were sure you had somewhere? We have prepared a [[collection of guidelines>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] on how to organise files and folders to ensure consistency and reproducibility in the future.
311 311  
206 +* Why is data organisation important?
207 +* How to organise my data repository?
312 312  
209 +[[[[image:image-20230330120354-1.png||height="344" width="244"]]>>https://drive.ebrains.eu/f/707147a883b94fae8e69/]]
210 +
313 313  ----
314 314  
315 -=== **At a glance: "Sharing experimental data on EBRAINS" ** ===
213 +=== **Integrate your data in the EBRAINS atlas services** ===
316 316  
215 +EBRAINS supports viewers for a variety of data, and is continuously looking to improve the services for visualising data. For 2D histology image data that is registered to an EBRAINS supported brain atlas, the data and the overlying atlas plates can be uploaded to the LocaliZoom viewer. See for example the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example.
317 317  
318 -|(% style="width:439px" %)(((
319 -[[[[image:image-20230324171114-2.png||height="354" width="250"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
320 -)))|(% style="width:461px" %)(((
321 -[[[[image:image-20230324171109-1.png||height="352" width="250"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
322 -)))|(% style="width:416px" %)[[[[image:image-20230330120354-1.png||height="352" width="250"]]>>https://drive.ebrains.eu/f/707147a883b94fae8e69/]]
323 -|(% style="width:439px" %)//Collection of useful information for researchers looking to share experimental data on EBRAINS.//|(% style="width:461px" %)//The EBRAINS data descriptor: a general overview //|(% style="width:416px" %)//Introduction to data organization: A [[collection of guidelines>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] on how to organise files and folders to ensure consistency and reproducibility in the future. //
217 +To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu.
324 324  
325 325  ----
326 326  
... ... @@ -329,6 +329,8 @@
329 329  (((
330 330  ==== ====
331 331  
226 +>
227 +
332 332  (((
333 333  >The curation process is time consuming and difficult
334 334  )))
... ... @@ -376,7 +376,3 @@
376 376  
377 377  
378 378  {{putFootnotes/}}
379 -~)~)~)~)~)~)
380 -~)~)~)
381 -~)~)~)~)~)~)~)~)~)
382 -~)~)~)~)~)~)
69399800_399857187337623_8446982631391756288_n.jpg
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.spieschnik
Size
... ... @@ -1,1 +1,0 @@
1 -198.8 KB
Content
Camilla.jpg
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.spieschnik
Size
... ... @@ -1,1 +1,0 @@
1 -607.5 KB
Content
EBRAINS-Share-Software.pdf
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.jan
Size
... ... @@ -1,1 +1,0 @@
1 -483.2 KB
Content
Image-1.jpg
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.spieschnik
Size
... ... @@ -1,1 +1,0 @@
1 -154.3 KB
Content
My project (1).jpg
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.spieschnik
Size
... ... @@ -1,1 +1,0 @@
1 -772.0 KB
Content
My project (2).jpg
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.spieschnik
Size
... ... @@ -1,1 +1,0 @@
1 -564.9 KB
Content
My project.jpg
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.spieschnik
Size
... ... @@ -1,1 +1,0 @@
1 -1007.8 KB
Content
My project1.jpg
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.spieschnik
Size
... ... @@ -1,1 +1,0 @@
1 -718.0 KB
Content
My project2.jpg
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.spieschnik
Size
... ... @@ -1,1 +1,0 @@
1 -701.2 KB
Content
Thumb.png
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.jan
Size
... ... @@ -1,1 +1,0 @@
1 -204.9 KB
Content
ansattfoto2.jpg
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.spieschnik
Size
... ... @@ -1,1 +1,0 @@
1 -1.8 MB
Content
csm_Jan_Gruendling_3_bf9567ebb1.jpg
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.spieschnik
Size
... ... @@ -1,1 +1,0 @@
1 -108.6 KB
Content
fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.spieschnik
Size
... ... @@ -1,1 +1,0 @@
1 -302.3 KB
Content
swc-flow-no-header.png
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.jan
Size
... ... @@ -1,1 +1,0 @@
1 -39.4 KB
Content
swc-flow.png
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.jan
Size
... ... @@ -1,1 +1,0 @@
1 -44.1 KB
Content