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1		-== Publishing neuroscience data, models and software via EBRAINS ==
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2	2
3	3
	20	+(% class="wikigeneratedid" id="HPublishingneurosciencedata2CmodelsandsoftwareviaEBRAINS" %)
	21	+(% style="font-size:2em" %)**Publishing neuroscience data, models and software via EBRAINS**
	22	+
4	4	(% class="wikigeneratedid" %)
5	5	The aim of this collab is to provide you with detailed information about publishing data, simulations, computational models, and software via EBRAINS. If you want a quick overview of the sharing process, see [[https:~~/~~/ebrains.eu/service/share-data>>https://ebrains.eu/service/share-data]].
6	6
...	...	@@ -8,21 +8,17 @@
8	8	{{toc depth="3" start="2"/}}
9	9	{{/box}}
10	10
11		-
12	12	== **Information to get started** ==
13	13
14		-(% style="text-align: center;" %)
15		-**Get started! **
16		-
17		-(% style="text-align: center;" %)
18	18	**[[REQUEST CURATION>>https://nettskjema.no/a/277393#/]] to share data, simulations, computational models, and software, - or to add a new version of an existing one. **
19	19
20		-(% style="text-align: center;" %)
21	21	Have you already published your data somewhere else? You can increase the exposure and impact of your shared dataset by also listing it on EBRAINS.
22	22
23	23
24		-(% style="text-align: center;" %)
25		-Search existing data, models and software in [[the EBRAINS Knowledge Graph Search>>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]]
	37	+(% class="box" style="text-align: center; font-size: 1.2em" %)
	38	+(((
	39	+Search existing data, models and software in the [[EBRAINS Knowledge Graph>>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]]
	40	+)))
26	26
27	27
28	28	EBRAINS accepts data from all modalities and from all species, as well as models, software, web services and metadata models (collectively referred to as research products) for sharing. You'll find detailed information about how to share each research product below.
...	...	@@ -35,7 +35,7 @@
35	35
36	36	(% class="box successmessage" %)
37	37	(((
38		-**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases
	53	+**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases. Reach us at [[curation-support@ebrains.eu>>mailto:curation-support@ebrains.eu]]
39	39	)))
40	40
41	41	----
...	...	@@ -60,30 +60,57 @@
60	60
61	61	[[image:image-20230326054341-1.png]]
62	62
63		-==== ====
	78	+(% class="box floatinginfobox" id="share-data-infographic" %)
	79	+(((
	80	+(% style="text-align:center" %)
	81	+//Download our infographic//
	82	+//with all you need to know//
	83	+//to share data on EBRAINS: //
	84	+// //
	85	+[[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
	86	+)))
64	64
	88	+
65	65	==== **1. Provide some general information about your dataset** ====
66	66
67	67
68		-[[image:https://lh3.googleusercontent.com/zh7TvO6w04YGW9jIhfhmdT6CexdGs-AWOLfJXKRq7-tdHOu6ar1rOQx8o4rZevrjXqgPZ7-Ejv4b6X9XpgXuHpdUXi-mBTHIUnv5Vz-DktHt0sP-PZ3gE8XgZid3TV3swV1uTCBhHx11ge0pjP7RVxswGQ=s2048||height="85px;" width="91px;"]]** Fill in the [[Curation request form>>https://nettskjema.no/a/277393#/]]. **This form collects preliminary information about your data, allowing us to assess whether the dataset fits within the scope of EBRAINS. The submission generates a curation ID allowing us to track the case.
69	69
	93	+(% style="margin-right:10px" %)[[image:https://lh3.googleusercontent.com/zh7TvO6w04YGW9jIhfhmdT6CexdGs-AWOLfJXKRq7-tdHOu6ar1rOQx8o4rZevrjXqgPZ7-Ejv4b6X9XpgXuHpdUXi-mBTHIUnv5Vz-DktHt0sP-PZ3gE8XgZid3TV3swV1uTCBhHx11ge0pjP7RVxswGQ=s2048||height="85px;" width="91px;"]](%%)** Fill in the [[Curation request form>>https://nettskjema.no/a/277393#/]]. **
70	70
71		-[[image:https://lh6.googleusercontent.com/yw442oS6BwZOlY-_0BoVxyCW3DrdcJ5ogCes92iOD16_rgNEVk56aNMDaVWXFfBLYv24bHzmGgBF9wg0szjH70xzuRTqxoQAeuy3knNO7axCHoyZDXwtyTcMgFnYwbOYxOT29LK-zchrUKLW6Mle93kOkQ=s2048||height="94px;" width="94px;"]]**Fill in the [[Ethics and Regulatory compliance form>>https://nettskjema.no/a/224765]]**. This form collects the necessary information needed for us to evaluate whether we can ethically and legally share the data via EBRAINS.
	95	+This form collects preliminary information about your data, allowing us to assess whether the dataset fits within the scope of EBRAINS. The submission generates a curation ID allowing us to track the case.
72	72
73	73
	98	+(% style="margin-right:10px" %)[[image:https://lh6.googleusercontent.com/yw442oS6BwZOlY-_0BoVxyCW3DrdcJ5ogCes92iOD16_rgNEVk56aNMDaVWXFfBLYv24bHzmGgBF9wg0szjH70xzuRTqxoQAeuy3knNO7axCHoyZDXwtyTcMgFnYwbOYxOT29LK-zchrUKLW6Mle93kOkQ=s2048||height="94px;" width="94px;"]](%%)**Fill in the [[Ethics and Regulatory compliance form>>https://nettskjema.no/a/224765]]**.
	99	+
	100	+This form collects the necessary information needed for us to evaluate whether we can ethically and legally share the data via EBRAINS.
	101	+
	102	+See below for information about the ethical and legal aspects concerning sharing of human subject data.
	103	+
	104	+
74	74	==== **2. Upload data ** ====
75	75
	107	+(% class="box floatinginfobox" id="share-data-infographic" %)
	108	+(((
	109	+(% style="text-align:center" %)
	110	+//Download our infographic//
	111	+//with guidelines
	112	+on data organization: //
76	76
77		-[[image:https://lh5.googleusercontent.com/sieKO-kW8O18iPaUyonwyo4UfHBmtc2E9BDnjbx52j6J_uGmm-OzGAo7sloMk3sYwKa6QW3hYQsOA9N4H7uGQpca088Wrk0Nurpt_J3B0-NSbcaPNdZIh21otQcG6jnAxLGiKoEvkTyaDGTMk3fu7me8mQ=s2048||height="94px;" width="94px;"]]**Ensure data is structured consistently prior to upload. **We look for organized data, not organized according to our standard. This is to support the broadest degree of sharing possible. We do however require that the data is organized in a consistent and precise manner. Please see our documentation for further guidance.
	114	+(% style="text-align:center" %)
	115	+[[[[image:image-20230621121014-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/lib/f5cf4964-f095-49bd-8c34-e4ffda05a497/file/ebrains-infographic-data-organisation.pdf/]]
	116	+)))
78	78
	118	+(% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/sieKO-kW8O18iPaUyonwyo4UfHBmtc2E9BDnjbx52j6J_uGmm-OzGAo7sloMk3sYwKa6QW3hYQsOA9N4H7uGQpca088Wrk0Nurpt_J3B0-NSbcaPNdZIh21otQcG6jnAxLGiKoEvkTyaDGTMk3fu7me8mQ=s2048||height="94px;" width="94px;"]](%%)**Ensure data is structured consistently prior to upload. **
79	79
80		-[[image:https://lh5.googleusercontent.com/EWtYwfVlbeC-jqPasgmzidqc50GrkKIEgwXeUeql8aaMHIukmFdWEy0nufVWWATbxDDK3XwwZEDmASrbpCsBk1u0HpAd8x4ZgAMsMPRcWyrb9etlV6FgKE_QN2e6SqKxHE0rzkR8uI1rRW_5z21TFGYVnw=s2048||height="91px;" width="91px;"]]**Upload data to EBRAINS Storage, either using a drag-and-drop solution (opt. 1) or an interactive python script (opt. 2).**
	120	+We look for organized data, not organized according to our standard. This is to support the broadest degree of sharing possible. We do however require that the data is organized in a consistent and precise manner. Please see our// //[[guidelines on data organization>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] for further guidance.
81	81
82		-//Opt. 1. //For smaller datasets with a reasonable amount of files, we recommend using the Collab-Bucket solution (drag-and-drop). A Collab Bucket must first be assigned to a dataset, which happens when a datasets is accepted for sharing.
	122	+(% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/EWtYwfVlbeC-jqPasgmzidqc50GrkKIEgwXeUeql8aaMHIukmFdWEy0nufVWWATbxDDK3XwwZEDmASrbpCsBk1u0HpAd8x4ZgAMsMPRcWyrb9etlV6FgKE_QN2e6SqKxHE0rzkR8uI1rRW_5z21TFGYVnw=s2048||height="91px;" width="91px;"]](%%)**Upload data to EBRAINS Storage, either using a drag-and-drop solution (opt. 1) or an interactive python script (opt. 2).**
83	83
84		-//Opt. 2. //For larger datasets or datasets with a large amount of files, we recommend using a programmatic approach. The [[python script>>https://github.com/eapapp/ebrains-data-storage/tree/main/data-proxy]] is interactive and does not require any additional programming.
	124	+**Opt. 1. **For smaller datasets with a reasonable amount of files, we recommend using the Collab-Bucket solution (drag-and-drop). A Collab Bucket must first be assigned to a dataset, which happens when a datasets is accepted for sharing.
85	85
	126	+**Opt. 2. **For larger datasets or datasets with a large amount of files, we recommend using a programmatic approach. The [[python script>>https://github.com/eapapp/ebrains-data-storage/tree/main/data-proxy]] is interactive and does not require any additional programming.
86	86
	128	+
87	87	EBRAINS offers secure, long-term storage at [[CSCS Swiss National Supercomputing Centre>>url:https://www.cscs.ch/]], with currently no upper limit of storage capacity.
88	88
89	89	If a data collection is already uploaded elsewhere, we may link to the already existing repository.
...	...	@@ -92,303 +92,370 @@
92	92	==== **3. Submit metadata** ====
93	93
94	94
95		-[[image:https://lh5.googleusercontent.com/WS4T2LhF9znWWChn3Z550agLrrb-KTWdYVsJSv0lh4cGjKbjuN1WV68WER9xkYqi1UqN7KYZz7bImYz3_TpOuTuvma7T192QUiUZoyJVPk1fj5NSDSQh_kpIeBufAOdDtsDRpPKK_P5EDPqRCTAaOTNyCw=s2048||height="91px;" width="91px;"]]**Submit metadata using our **[[EBRAINS Metadata wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]** (opt. 1), or through direct interaction with the Knowledge Graph (opt. 2) **
	137	+(% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/WS4T2LhF9znWWChn3Z550agLrrb-KTWdYVsJSv0lh4cGjKbjuN1WV68WER9xkYqi1UqN7KYZz7bImYz3_TpOuTuvma7T192QUiUZoyJVPk1fj5NSDSQh_kpIeBufAOdDtsDRpPKK_P5EDPqRCTAaOTNyCw=s2048||height="91px;" width="91px;"]](%%)**Submit metadata using the **[[EBRAINS Metadata Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]** (opt. 1), or directly via the Knowledge Graph (opt. 2) **
96	96
97		-//Opt. 1.// Manually submit the minimal required metadata via the [[EBRAINS Metadata wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. The minimal required metadata covers extended bibliographic information necessary to publish your dataset on EBRAINS. The submitted information, including uploaded files, will be sent to the Curation team automatically
	139	+**Opt. 1.** Manually submit the minimal required metadata via the [[EBRAINS Metadata Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. The minimal required metadata covers extended bibliographic information necessary to publish your dataset on EBRAINS. The submitted information, including uploaded files, will be sent to the Curation team automatically
98	98
99		-//Opt. 2.// To go beyond the minimal required metadata, you can directly interact with the Knowledge Graph (KG) in your private space. Within the private space, you can upload metadata and interact with them, moreover you can connect your metadata to existing publicly accessible entries. Access to your private space is granted upon the initiation of the curation process. You can access your private space via:
	141	+**Opt. 2.** To go beyond the minimal required metadata, you can directly interact with the Knowledge Graph (KG) in your private space. Within the private space, you can upload metadata and interact with them, moreover you can connect your metadata to existing publicly accessible entries. Access to your private space is granted upon the initiation of the curation process. You can access your private space via:
100	100
101	101	* Knowledge Graph Editor: This User Interface allows you to manually enter metadata into your KG space and validate metadata that are programmatically uploaded. The Editor contains a basic set of openMINDS metadata templates, but can be extended to the full openMINDS metadata model on request. Access is granted once the request is accepted.
102	102	* [[Fairgraph>>https://fairgraph.readthedocs.io/en/stable/]]: This is the recommended software tool for programmatic interaction with the KG. It allows you to programmatically upload openMINDS compliant metadata into your KG space and interact with existing metadata.
103	103	* [[KG Core Python SDK>>https://github.com/HumanBrainProject/kg-core-sdks]]: This python package gives you full freedom in interacting with he KG. It allows you to upload any JSON-LD with metadata into your private space. Note, for dataset publications in EBRAINS, the JSON-LD metadata files have to comply to openMINDS.
104	104
105		-
106	106	Datasets published through the EBRAINS Knowledge Graph have to be registered using **openMINDS compliant metadata** delivered as JSON-LD files. See this summary table for an overview of [[the minimally required openMINDS properties for publishing>>https://drive.ebrains.eu/lib/47995dbc-f576-4008-a76c-eefbfd818529/file/ebrains-minimum-required-metadata.xlsx]] on EBRAINS.
107	107
108	108
109		-**The openMINDS metadata framework**
	150	+==== **4. Write a Data Descriptor** ====
110	110
111		-openMINDS (open Metadata Initiative for Neuroscience Data Structures) is a community-driven, open-source metadata framework for graph database systems, such as the EBRAINS Knowledge Graph. It is composed of linked metadata models, libraries of serviceable metadata instances, and supportive tooling ([[openMINDS Python>>url:https://pypi.org/project/openMINDS/]], openMINDS Matlab). For exploring the openMINDS schemas, go to the [[HTML documentation>>url:https://humanbrainproject.github.io/openMINDS/]]. For a full overview of the framework, go to [[the openMINDS collab>>url:https://wiki.ebrains.eu/bin/view/Collabs/openminds/]] or the [[GitHub repository>>https://github.com/HumanBrainProject/openMINDS]].
112	112
113		-For feedback, requests, or contributions, please get in touch with the openMINDS development team via
114	114
115		-* the support-email: [[openminds@ebrains.eu>>path:mailto:openminds@ebrains.eu]]
116		-* the [[GitHub issue tracker>>url:https://github.com/HumanBrainProject/openMINDS/issues]]
117		-* the INCF NeuroStars [[openMINDS Community Forum>>url:https://neurostars.org/t/openminds-community-forum-virtual/20156]]
	154	+(% style="margin-right:10px" %)[[image:https://lh4.googleusercontent.com/lMYEKOXzejbBydOdotWWteXQo7j363xRyntBGjcPZVEdtIU1CJYX7q1STpdr2JPZK4hpWWXk20UlkUOqDGL5kX6vnQVBSdrfUo6EGfXOwpuGq1Uygv0tTZJ0lRO6voJvg56QC2mufvjAcRXGfAKFOjtc6w=s2048||height="94px;" width="94px;"]](%%)**Write a data descriptor by filling in **[[this template>>https://drive.ebrains.eu/f/a2e07c95b1a54090bbbc/?dl=1]]**.**
118	118
	156	+The Data Descriptor is a document helping others interpret and reuse (and prevent misuse) of your data, and is critical to achieve a basic level of FAIR. The document will be uploaded in the repository of the data, shared as a PDF.
119	119
120		-==== **4. Write a Data Descriptor ** ====
	158	+See our infographic about the data descriptor for inspiration or guidance.
121	121
	160	+Check out previous examples in the KG Search. See e.g., the data descriptor for the dataset "[[Anterogradely labeled axonal projections from the orbitofrontal cortex in rat>>https://doi.org/10.25493/2MX9-3XF]]".
122	122
123		-[[image:https://lh4.googleusercontent.com/lMYEKOXzejbBydOdotWWteXQo7j363xRyntBGjcPZVEdtIU1CJYX7q1STpdr2JPZK4hpWWXk20UlkUOqDGL5kX6vnQVBSdrfUo6EGfXOwpuGq1Uygv0tTZJ0lRO6voJvg56QC2mufvjAcRXGfAKFOjtc6w=s2048||height="94px;" width="94px;"]]**Write a data descriptor by filling in **[[this template>>https://drive.ebrains.eu/f/a2e07c95b1a54090bbbc/?dl=1]]** . **The Data Descriptor is a document helping others interpret and reuse (and prevent misuse) of your data, and is critical to achieve a basic level of FAIR. The document will be uploaded in the repository of the data, shared as a PDF.
	162	+Journal publications sufficiently describing the shared data, such as made available through [[Nature Scientific Data>>http://www.nature.com/sdata/about]], [[Elsevier Data in Brief>>http://www.journals.elsevier.com/data-in-brief/]], [[BMC Data note>>https://bmcresnotes.biomedcentral.com/submission-guidelines/preparing-your-manuscript/data-note]] and more, can replace the EBRAINS Data Descriptor.
124	124
125	125
126		-Check out previous examples in the KG Search! See e.g., the data descriptor for the dataset "[[Anterogradely labeled axonal projections from the orbitofrontal cortex in rat>>https://doi.org/10.25493/2MX9-3XF]]".
	165	+(% class="box floatinginfobox" id="data-descriptor-infographic" %)
	166	+(((
	167	+(% style="text-align:center" %)
	168	+//Download our infographic
	169	+about the EBRAINS Data//
	170	+//Descriptor//
	171	+// //
	172	+[[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
	173	+)))
127	127
128		-Journal publications sufficiently describing the shared data, such as made available through [[Nature Scientific Data>>http://www.nature.com/sdata/about]], [[Elsevier Data in Brief>>http://www.journals.elsevier.com/data-in-brief/]], [[BMC Data note>>https://bmcresnotes.biomedcentral.com/submission-guidelines/preparing-your-manuscript/data-note]] and more, can replace the EBRAINS Data Descriptor.
	175	+==== **5. Preview and publish** ====
129	129
130	130
131		-|(% style="width:175px" %)[[[[image:image-20230324171109-1.png||height="154" width="109"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]|(% style="width:1662px" %)The EBRAINS Data descriptor at-a-glance
	178	+(% style="margin-right:10px" %)[[image:https://lh4.googleusercontent.com/XqT26Q4yWJK26cjtjhI4ToXoZZMxhT9LimG4Hk9mePxy0-KPKgpVIzcuiP5mOQowBgf2JjkrWUq2VbCmafWWZPJplEZALnFOlCZHLlQgzOx7fFwoBteyi_IlMLkPBS9vtOcdNIZ59HyLnQz4RsTQ0lUrSw=s2048||height="91px;" width="91px;"]](%%)**Preview and approve the release of your dataset. **
132	132
	180	+Once a Curator has assembled the dataset in the EBRAINS Knowledge Graph, combining the data, metadata and data descriptor, the data provider will receive a private URL for previewing the dataset prior to release. We need an official approval from the data custodian{{footnote}}The Data Custodian is responsible for the content and quality of the Data and metadata, and is the person to be contacted by EBRAINS CS in case of any misconduct related to the Data. It is the obligation of a Data Custodian to keep EBRAINS informed about changes in the contact information of the authors of the Datasets provided by them ([[EBRAINS Data Provision Protocol - version 1.1>>https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]]).{{/footnote}} to release the dataset. Once released, a [[DataCite DOI>>https://datacite.org/]] will be generated for the dataset. If the identical data collection has received a DOI elsewhere, we recommend re-using the already issued DOI.
133	133
134		-==== **5. Preview and publish ** ====
135	135
136	136
137		-[[image:https://lh4.googleusercontent.com/XqT26Q4yWJK26cjtjhI4ToXoZZMxhT9LimG4Hk9mePxy0-KPKgpVIzcuiP5mOQowBgf2JjkrWUq2VbCmafWWZPJplEZALnFOlCZHLlQgzOx7fFwoBteyi_IlMLkPBS9vtOcdNIZ59HyLnQz4RsTQ0lUrSw=s2048||height="91px;" width="91px;"]]**Preview and approve the release of your dataset. **Once a Curator has assembled the dataset in the EBRAINS Knowledge Graph, combining the data, metadata and data descriptor, the data provider will receive a private URL for previewing the dataset prior to release. We need an official approval from the data custodian{{footnote}}The Data Custodian is responsible for the content and quality of the Data and metadata, and is the person to be contacted by EBRAINS CS in case of any misconduct related to the Data. It is the obligation of a Data Custodian to keep EBRAINS informed about changes in the contact information of the authors of the Datasets provided by them ([[EBRAINS Data Provision Protocol - version 1.1>>https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]]).{{/footnote}} to release the dataset. Once released, a [[DataCite DOI>>https://datacite.org/]] will be generated for the dataset. If the identical data collection has received a DOI elsewhere, we recommend re-using the already issued DOI.
138	138
139		-
140	140	----
141	141
142		-==== **Sharing human data ** ====
	187	+=== Step by Step - Models ===
143	143
144		-(% class="box floatinginfobox" %)
145		-(((
146		-**Human subject data that can be shared on EBRAINS consists of:**
147	147
148		-- Post-mortem data
149		-- Aggregated data
150		-- Strongly pseudonymized or de-identified subject data with a legal basis for sharing (e.g. Informed Consent)
	190	+==== 1. Start early ====
151	151
152		-(% class="small" %)//If you have human data that does not classify as any of the above, please get in touch and we will clarify the available options. //
153		-)))
	192	+It is not necessary to wait until you are ready to publish to register your model with EBRAINS.
154	154
155		-Human data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
	194	+By registering a model early in your project, you can take advantage of EBRAINS tools
	195	+to keep track of simulations and to share them with your collaborators.
156	156
157		-Post-mortem and aggregated human data can be shared openly, given direct identifiers in the metadata are removed. Strongly pseudonymized and de-identified data can be shared via the Human Data Gateway (HDG).
	197	+==== 2. Create/choose a Collab workspace ====
158	158
159		-The Human Data Gateway (HDG) was introduced in February 2021 as a response to the needs of multiple data providers who are bringing human subject data to EBRAINS. HDG covers the sharing of strongly pseudonymized or de-identified data, a limited range human subject data without direct identifiers and with very few indirect identifiers.
	199	+We use EBRAINS Collaboratory "collab" workspaces to help manage the model curation process.
160	160
161		-The HDG adds an an authentication layer on top of the data. This means that **data users **must request access to the data (via their EBRAINS account) and will receive access provided they actively accept the [[EBRAINS Access Policy>>https://ebrains.eu/terms#access-policy]], the [[EBRAINS General Terms of Use>>https://ebrains.eu/terms#general-terms-of-use]], and the [[EBRAINS Data Use Agreement>>https://ebrains.eu/terms#data-use-agreement]]. The account holder also have to accept that information about their request and access to specific data under HDG is being tracked and stored. **Data owners** must be aware that sharing under the HDG affects the legal responsibilities for the data. They must agree to joint control of the data (see the [[Data Provision Protocol v1>>url:https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]], section 1.4 - 1.5) and the Data Protection Officers of the responsible institutions must have accepted that the data can be shared under HDG.
	201	+In particular, we use collab membership (the "Team") to control who can view or edit your model metadata prior to publication.
162	162
163		-The HDG is an extension of the existing services and does not replace the future EBRAINS Service for sensitive data (planned for 2024) which is outside the domain of the current EBRAINS Data and Knowledge services.
	203	+It is up to you whether you create a new collab for each model, or reuse an existing collab
	204	+(it is no problem to have multiple models associated with a single collab).
164	164
	206	+Collabs are also useful for storing simulation results, adding documentation for your model,
	207	+and/or providing tutorials in Jupyter notebooks.
165	165
166		-----
	209	+==== 3. Upload code ====
167	167
168		-=== Step by Step - Models ===
	211	+We recommend storing model code and/or configuration files in an online Git repository, for example on GitHub.
	212	+This repository should be public when you publish the model, but a private repository can be used for model development.
169	169
	214	+Alternatively, you can upload code to the Collab Drive or Bucket storage.
170	170
171		-~1. Request curation using the [[Curation request form>>https://nettskjema.no/a/277393#/]]. You will be contacted by a curator with more information.
	216	+==== 4.Submit metadata ====
172	172
	218	+We recommend submitting metadata using the Model Catalog app, installed in your collab.
173	173
174		-//Additional information will be added soon.//
	220	+To install it:
175	175
176		-----
	222	+1. click the "+ Create" button
	223	+1. in the "Create Page" form, add a title, such as "Model Catalog", and select "Community App", then click "Create"
	224	+1. scroll down until you find the "Model Catalog" app, click "Select", then "Save & View"
177	177
178		-=== Step by Step - Code ===
	226	+You will then see a table of all the models and validation tests associated with this collab.
	227	+If this is your first time using the app, the table will probably be empty.
	228	+To add your model, click "+", fill in the form, then click "Add model".
179	179
180		-[[[[image:swc-flow-no-header.png||alt="swc-flow.png"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
	230	+As development of your model proceeds, you can easily register new versions of the code,
	231	+and new parameterizations, by clicking "Add new version".
181	181
182		-1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]].[[[[image:Thumb.png||alt="EBRAINS-Share-Software.pdf" height="377" style="float:right" width="257"]]>>attach:EBRAINS-Share-Software.pdf]]
183		-1. One of our creators will then open a ticket and contact you with futher instructions. In these instructions you will find the links to your software and software version entries in the Knowledge Graph.
184		-1. In the next step you need to enter the metadata of your software in the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided in the ticket. The links will lead you to the space in the KG, which was created especially for you. You can start directly with the editing of your software. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support.
185		-1. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary.
186		-1. After a quality check, we integrate and publish the information to the Knowledge Graph. Your software is then searchable and usable for the neuroscience community.
	233	+If you prefer not to use the app, you can instead fill in the [[Curation request form>>https://nettskjema.no/a/277393#/]].,
	234	+and you will be contacted by e-mail with further instructions.
187	187
188		-If you want to add a new version to an already curated software, please write to [[curation-support@humanbrainproject.eu>>path:mailto:curation-support@humanbrainproject.eu]] or open a ticket at [[https:~~/~~/support.humanbrainproject.eu/.>>url:https://support.humanbrainproject.eu/]]
189		-For more information, visit our [[guide>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]].
	236	+==== 5. Provide a reference dataset ====
190	190
191		-----
	238	+Once you're ready to publish your model entry in the EBRAINS Knowledge Graph,
	239	+we encourage you to provide a dataset containing the simulation results produced by your model,
	240	+following the process under "Step by step - Data" above.
192	192
193		-=== Webservices and metadata models ===
	242	+These reference data will be linked to the model, and will be helpful to anyone trying to
	243	+reuse your model.
194	194
195		-(% class="wikigeneratedid" id="HContact...." %)
196		-(% style="color:#e74c3c; font-size:16px" %){{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-np253c"/}}(% style="color:#4a5568; font-size:16px" %)
	245	+We will soon introduce a "Reproducible" badge for all models that include a reference dataset,
	246	+and whose simulation results can be reproduced by an EBRAINS curator.
197	197
198		-----
	248	+==== 6. Request publication, preview and publish ====
199	199
200		-== **The curation team: meet the curators** ==
	250	+Until you request your model entry to be published in the EBRAINS Knowledge Graph,
	251	+only members of the collab will be able to view the model entry, in the Model Catalog app
	252	+or using the Model Validation Python client.
201	201
202		-**Located in Norway:**
	254	+After publication, the model will appear in the [[EBRAINS public search results>>https://search.kg.ebrains.eu/?category=Model||rel="noopener noreferrer" target="_blank"]], and will receive a DOI.
203	203
204		-|(% style="width:303px" %)(((
205		-[[image:My project2.jpg||height="209" width="167"]]
	256	+To request publication, [[contact EBRAINS support>>https://ebrains.eu/support||rel="noopener noreferrer" target="_blank"]], providing the collab name and the model name or ID.
206	206
207		-**Archana Golla**
208	208
209		-(% class="small" %)Curation Scientist
210		-Neuroscience (PhD)(%%)
211		-(% class="small" style="color:#4a5568" %)**Behavioral neuroscience and microscopy**
212		-)))|(% style="width:303px" %)(((
213		-[[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]]
	259	+Curators will then perform a number of checks:
214	214
215		-**Camilla H. Blixhavn**
	261	+1. Does the model description provide sufficient context to understand the purpose and use of the model?
	262	+1. Does the code repository contain a licence file, explaining the conditions for reusing the code?
	263	+1. Does the model have a clearly defined version identifier (e.g. v1.0)? For models in a Git repository, the version identifier should match the name of a tag or release.
216	216
217		-(% class="small" %)Curation Scientist,
218		-Phd Student
219		-Neuroscience (M. Sc.)(%%)
220		-(% class="small" style="color:#4a5568" %)**Neuroanatomy and data integration**
221		-)))|(% style="width:303px" %)(((
222		-[[image:My project (1).jpg||height="209" width="167"]]
	265	+The curators will also take a snapshot of your model code.
223	223
224		-**Ingrid Reiten**
	267	+* For models in public Git repositories, we archive a copy of the repository in [[Software Heritage>>https://www.softwareheritage.org/||rel="noopener noreferrer" target="_blank"]].
	268	+* For models in a collab Bucket or Drive, we make a read-only copy of the code in a public container in the EBRAINS repository.
225	225
226		-(% class="small" %)Curation Scientist,
227		-Phd Student
228		-Neuroscience (M. Sc.)(%%)
229		-(% class="small" style="color:#4a5568" %)**Neuroanatomy and structural connectivity**
230		-)))|(% style="width:303px" %)(((
231		-[[image:My project1.jpg||height="209" width="167"]]
	270	+Once this is done, you will be invited to review a preview of how the model entry will appear in the KG Search,
	271	+and will have the opportunity to request modifications prior to approval and publication.
232	232
233		-**Sophia Pieschnik**
	273	+----
234	234
235		-(% class="small" %)Curation Scientist
236		-Neurocognitive Psychology (M. Sc.)(%%)
237		-(% class="small" style="color:#4a5568" %)**Neuroimaging **
	275	+=== Step by Step - Software ===
	276	+
	277	+
	278	+(% class="box floatinginfobox" id="software-curation-infographic" %)
	279	+(((
	280	+(% style="text-align:center" %)
	281	+//Software curation at a glance//
	282	+// //
	283	+[[[[image:Thumb2.png||alt="EBRAINS-Share-Software.pdf" height="287" width="197"]]>>attach:EBRAINS-Share-Software-4.pdf]]
238	238	)))
239	239
240		-|(% style="width:303px" %)(((
241		-[[image:My project.jpg||height="209" width="167"]]
	286	+(% style="margin-left:15px" %)[[[[image:Screenshot 2023-06-06 1122082.png||alt="swc-flow.png" height="136" width="637"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
242	242
243		-**Heidi Kleven**
	288	+1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions, you will find the links to your software and software version entries in the Knowledge Graph.
	289	+1. Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary.
	290	+1. After a quality check, we integrate and publish the information to the Knowledge Graph. Your software is then searchable and usable for the neuroscience community.
244	244
245		-(% class="small" %)Curation Scientist,
246		-Phd Student
247		-Neuroscience (M. Sc.)(%%)
248		-(% class="small" style="color:#4a5568" %)**Neuroanatomy and brain atlases**
249		-)))| | |
	292	+If you want to add a new version to an already curated software, please request this via the [[curation request form>>https://nettskjema.no/a/277393]].
250	250
251		-
252		-\\**Located in Germany:**
	294	+For more information, visit our [[Guide to Software Curation in the EBRAINS Knowledge Graph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] or see our infographic on the right.
253	253
254		-|(% style="width:303px" %)(((
255		-[[image:My project (2).jpg||height="209" width="167"]]
256	256
257		-**Jan Gündling**
	297	+----
258	258
259		-(% class="small" %)Curation Scientist,
260		-Phd Student
261		-Sensors and Cognitive Psychology (M. Sc.)(%%)
262		-(% class="small" style="color:#4a5568" %)**Human-Computer Interaction**
263		-)))|(% style="width:303px" %)(((
264		-
	299	+=== Sharing human subject data ===
265	265
	301	+(% class="box floatinginfobox" %)
	302	+(((
	303	+**Human subject data that can be shared on EBRAINS:**
	304	+// //
	305	+// - Post-mortem data//
	306	+// - Aggregated data//
	307	+// - Strongly pseudonymized or de-identified subject data//
	308	+// with a legal basis for sharing (e.g. Informed Consent)//
	309	+// //
266	266
	311	+(% class="small" %)
	312	+//If you have human data that does not qualify as any of the above,//
	313	+//please [[get in touch>>https://www.ebrains.eu/contact/]] and we will clarify the available options.//
	314	+)))
267	267
268	268
	317	+Human subject data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
269	269
	319	+Post-mortem and aggregated human data can be shared openly, given direct identifiers in the metadata are removed. Strongly pseudonymized and de-identified data can be shared via the Human Data Gateway (HDG).
270	270
	321	+The Human Data Gateway (HDG) was introduced in February 2021 as a response to the needs of multiple data providers who are bringing human subject data to EBRAINS. HDG covers the sharing of strongly pseudonymized or de-identified data, a limited range human subject data without direct identifiers and with very few indirect identifiers.
271	271
	323	+The HDG adds an an authentication layer on top of the data. This means that **data users **must request access to the data (via their EBRAINS account) and will receive access provided they actively accept the [[EBRAINS Access Policy>>https://ebrains.eu/terms#access-policy]], the [[EBRAINS General Terms of Use>>https://ebrains.eu/terms#general-terms-of-use]], and the [[EBRAINS Data Use Agreement>>https://ebrains.eu/terms#data-use-agreement]]. The account holder also have to accept that information about their request and access to specific data under HDG is being tracked and stored. **Data owners** must be aware that sharing under the HDG affects the legal responsibilities for the data. They must agree to joint control of the data (see the [[Data Provision Protocol v1>>url:https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]], section 1.4 - 1.5) and the Data Protection Officers of the responsible institutions must have accepted that the data can be shared under HDG.
272	272
	325	+The HDG is an extension of the existing services and does not replace the future EBRAINS Service for sensitive data (planned for 2024) which is outside the domain of the current EBRAINS Data and Knowledge services.
273	273
	327	+----
274	274
	329	+== **The openMINDS metadata framework** ==
275	275
276		-**Lyuba Zehl**
	331	+(% class="box floatinginfobox" %)
	332	+(((
	333	+[[[[image:https://github.com/HumanBrainProject/openMINDS/raw/main/img/light_openMINDS-logo.png||alt="openMINDS logo" height="87" width="164"]]>>https://github.com/HumanBrainProject/openMINDS]]
	334	+)))
277	277
278		-(% class="small" %)Knowledge Systems Engineer
279		-Dr. rer. nat. (Systems Neuroscience)(%%)
280		-(% class="small" style="color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
281		-)))|(% style="width:303px" %) |
	336	+openMINDS (open Metadata Initiative for Neuroscience Data Structures) is a community-driven, open-source metadata framework for graph database systems, such as the EBRAINS Knowledge Graph. It is composed of linked metadata models, libraries of serviceable metadata instances, and supportive tooling ([[openMINDS Python>>url:https://pypi.org/project/openMINDS/]], openMINDS Matlab). For exploring the openMINDS schemas, go to the [[HTML documentation>>url:https://humanbrainproject.github.io/openMINDS/]]. For a full overview of the framework, go to [[the openMINDS collab>>url:https://wiki.ebrains.eu/bin/view/Collabs/openminds/]] or the [[GitHub repository>>https://github.com/HumanBrainProject/openMINDS]].
282	282
	338	+For feedback, requests, or contributions, please get in touch with the openMINDS development team via
	339	+
	340	+* the support-email: [[openminds@ebrains.eu>>path:mailto:openminds@ebrains.eu]]
	341	+* the [[GitHub issue tracker>>url:https://github.com/HumanBrainProject/openMINDS/issues]]
	342	+* the INCF NeuroStars [[openMINDS Community Forum>>url:https://neurostars.org/t/openminds-community-forum-virtual/20156]]
	343	+
283	283	----
284	284
285		-== **Information and resources for researchers looking to share data** ==
	346	+== **Add practical value to your shared data, model or software** ==
286	286
287		-Below you can find some resources that can come in handy if you are looking to share data via EBRAINS, or in general.
288	288
289		-----
	349	+=== **Showcase shared data, models or software in other services** ===
290	290
291		-=== **Improve your research product ** ===
	351	+Below is a list of additional services that data, models or software shared via EBRAINS can benefit from. EBRAINS is continuously looking to increase the number of interoperable services.
292	292
293		-(% class="wikigeneratedid" %)
294		-**{{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-fkdv6h"/}}**
295	295
296		-==== **Add a tutorial or learning resource to your research product ** ====
	354	+|(% colspan="2" %)**Viewer for 2D images**
	355	+|[[image:MIO_screenshot.PNG]]|Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].
	356	+|(% colspan="2" %)**Viewer for sequential atlas-registered 2D images with annotation options**
	357	+|[[image:LZ_screenshot.PNG]]|Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].
	358	+|(% colspan="2" %)**Interactive 3D atlas viewer with options for data visualization**
	359	+|[[image:3Datlas_screenshot.PNG]]|Upload your data to the //Siibra-explorer//: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to register your data to atlases, read about the [[Atlas services on ebrains.eu>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]].
	360	+|(% colspan="2" %)**Use your research product in an interactive publication**
	361	+|[[image:LivePaper_screenshot.PNG]]|Add your data, models or software to a// Live paper. //Read more about [[Live papers on ebrains.eu>>https://www.ebrains.eu/data/live-papers/live-papers]].
297	297
298		-==== (% style="color:#e74c3c" %)- Learning resource [information](%%) ====
	363	+----
299	299
	365	+==== **Add a tutorial or learning resource ** ====
300	300
301		-==== **Create a workflow for .... ? ** ====
	367	+(% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %)
	368	+(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
302	302
303		-==== (% style="color:#e74c3c" %)- Workflows [information](%%) ====
304	304
	371	+==== **Create a workflow** ====
	372	+
	373	+(% class="wikigeneratedid" id="H-Workflows5Binformation5D" %)
	374	+(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
	375	+
305	305	----
306	306
307		-=== **Integrate your data, models or software with other services** ===
	378	+== **General benefits of sharing data ** ==
308	308
309		-EBRAINS supports further integration for a variety of data, and is continuously looking to increase the number of interoperable services.
	380	+By sharing your data via EBRAINS, you gain access to the following benefits:
310	310
311		-* Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].
312		-* Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].
313		-* Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description] {{mention reference="XWiki.adavison" style="FULL_NAME" anchor="XWiki-adavison-62mbgl"/}}
314		-* Integrate your data to //the Siibra//-explorer: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu.
	382	+[[image:image-20230324170841-3.png]]
315	315
	384	+
	385	+
	386	+We support you to better follow the [[FAIR^^ ^^guiding principles>>https://www.nature.com/articles/sdata201618]] for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.  Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product.
	387	+
316	316	----
317	317
318		-=== **The benefits of sharing data ** ===
	390	+== **Frequently asked questions ** ==
319	319
320		-(% style="color:#000000" %)Sharing your data, models or code (research products) via EBRAINS makes it discoverable amongst other research products available in the (%%)[[(% style="color:#000000" %)EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]](%%). This is made possible by the highly flexible metadata framework describing neuroscience data in detail.
	392	+>Is the curation process time consuming and difficult?
321	321
322		-(% style="color:#000000" %)EBRAINS is gradually implementing interconnected tools and analysis workflows developed in the Human Brain Project (HBP) to further enhance the output from adding your dataset to the database.
	394	+No, if communication is on a regular basis, we are able to finish curation within two weeks. Publishing your data naturally takes some effort but we will support you as much as possible.
323	323
	396	+>Is sharing my data also beneficial for me or only for others?
324	324
325		-By sharing your data via EBRAINS, you gain access to the following benefits:
	398	+When you publish your data via EBRAINS, we provide comprehensive data management support and safe long term storage - all free of charge. Additionally, your data can be cited, just like a scientific journal article. Sharing your data may even lead to new funding opportunities. Many funders specifically support projects that are part of the “Open Science” initiative.
326	326
327		-[[image:image-20230324170841-3.png]]
	400	+>Can my data be too insignificant to share?
328	328
	402	+No, there is no such thing as insignificant data. Data that is considered insignificant for a given topic, may have great significance for another. By making “insignificant” data publicly available, other researchers may find something interesting that was off-topic for your own purposes.
329	329
	404	+>Can my data be easily misused if I share it?
330	330
331		-We support you to better follow the FAIR^^ ^^guiding principles for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.  Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product.
	406	+No, your data will be covered by a Creative Commons license of your choice. There are a variety of licenses available, enabling you to prevent use for specific purposes, e.g. commercial use.
332	332
	408	+>Can I share my data before my paper is published?
333	333
334		-----
	410	+Yes, if you do not want to share your data before publishing the results in an article, you can publish your dataset with an embargo status. This will make it possible to find information about the data without making the data itself available, and give you a citeable DOI.
335	335
336		-=== **At a glance: "Sharing experimental data on EBRAINS" ** ===
	412	+>Can I lose my competitive edge if I share my data before I publish the associated paper?
337	337
	414	+No, publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data.
338	338
339		-|(% style="width:439px" %)(((
340		-[[[[image:image-20230324171114-2.png||height="354" width="250"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
341		-)))|(% style="width:461px" %)(((
342		-
343		-)))|(% style="width:416px" %)[[[[image:image-20230330120354-1.png||height="352" width="250"]]>>https://drive.ebrains.eu/f/707147a883b94fae8e69/]]
344		-|(% style="width:439px" %)//Collection of useful information for researchers looking to share experimental data on EBRAINS.//|(% style="width:461px" %)//The EBRAINS data descriptor: a general overview //|(% style="width:416px" %)//Introduction to data organization: A [[collection of guidelines>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] on how to organise files and folders to ensure consistency and reproducibility in the future. //
345	345
346	346	----
347	347
348		-=== **Common concerns - and answers ** ===
	419	+== (% style="color:#1a202c; font-family:inherit; font-size:29px" %)**The curation team: meet the curators**(%%) ==
349	349
350		-(((
351		-==== ====
	421	+The EBRAINS curators help researchers publish their research using the EBRAINS Research Infrastructure. A curator’s job is similar to the job of an editor of a scientific journal, checking the data is organized, understandable, accessible and sufficiently described.
352	352
353		-(((
354		->The curation process is time consuming and difficult
355		-)))
356		-)))
	423	+The curators in EBRAINS are located in Oslo, Jülich, Trier and Paris.
	424	+
357	357
358		-(% class="wikigeneratedid" id="HHowcanIshareA0models3F" %)
359		-Publishing your data naturally takes some time and effort but we will support you as much as possible. If communication is on a regular basis, we are able to finish basic curation - from the initial contact to dataset release - within two weeks.
	426	+**Located in Norway**
360	360
361		->Sharing my data is not beneficial for me - only for others
	428	+|(% style="width:303px" %)(((
	429	+[[image:My project2.jpg||height="209" width="167"]]
362	362
	431	+**Archana Golla**
363	363
364		-When you publish your data via EBRAINS, we provide comprehensive data management support and safe long term storage - all free of charge. Additionally, your data can be cited, just like a scientific journal article. Sharing your data may even lead to new funding opportunities. Many funders specifically support projects that are part of the “Open Science” initiative.
	433	+(% class="small" %)Curation Scientist
	434	+Neuroscience (PhD)(%%)
	435	+(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Behavioral neuroscience and microscopy**
	436	+)))|(% style="width:303px" %)(((
	437	+[[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]]
365	365
366		->My data is too insignificant to share
	439	+**Camilla H. Blixhavn**
367	367
	441	+(% class="small" %)Curation Scientist,
	442	+Phd Student
	443	+Neuroscience (M. Sc.)(%%)
	444	+(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and data integration**
	445	+)))|(% style="width:303px" %)(((
	446	+[[image:My project (1).jpg||height="209" width="167"]]
368	368
369		-There is no such thing as insignificant data. Data that is considered insignificant for a given topic, may have great significance for another. By making “insignificant” data publicly available, other researchers may find something interesting that was off-topic for your own purposes.
	448	+**Ingrid Reiten**
370	370
371		->My data can easily be misused if I share it with the world
	450	+(% class="small" %)Curation Scientist,
	451	+Phd Student
	452	+Neuroscience (M. Sc.)(%%)
	453	+(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and structural connectivity**
	454	+)))|(% style="width:303px" %)(((
	455	+[[image:My project1.jpg||height="209" width="167"]]
372	372
	457	+**Sophia Pieschnik**
373	373
374		-Your data will be covered by a Creative Commons license of your choice. There are a variety of licenses available, enabling you to prevent use for specific purposes, e.g. commercial use.
	459	+(% class="small" %)Curation Scientist
	460	+Neurocognitive Psychology (M. Sc.)(%%)
	461	+(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroimaging **
	462	+)))
375	375
376		->I don't think I'm allowed to share my data
	464	+|(% style="width:303px" %)(((
	465	+[[image:My project.jpg||height="209" width="167"]]
377	377
	467	+**Heidi Kleven**
378	378
379		-Many institutions are still very careful about what can be shared and how, but the situation is constantly evolving. As a researcher providing data, you will be asked to fill out an ethics compliance survey which survey to ensure that data published through the EBRAINS platform has been collected according to EU regulations. We are working on solutions for sharing anonymised human data that complies with GDPR standards to protect the identity of research subjects.
	469	+(% class="small" %)Curation Scientist,
	470	+Phd Student
	471	+Neuroscience (M. Sc.)(%%)
	472	+(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and brain atlases**
	473	+)))| | |
380	380
381		->I can't share my data before my paper is published
	475	+
	476	+\\**Located in Germany**
382	382
	478	+|(% style="width:303px" %)(((
	479	+[[image:My project (2).jpg||height="209" width="167"]]
383	383
384		-If you do not want to share your data before publishing the results in an article, you can publish your dataset with an embargo status. This will make it possible to find information about the data without making the data itself available, and give you a citeable DOI.
	481	+**Jan Gündling**
385	385
386		->If I share my data before I publish the associated paper, I will lose my competitive edge
	483	+(% class="small" %)Curation Scientist,
	484	+Phd Student
	485	+Sensors and Cognitive Psychology (M. Sc.)(%%)
	486	+(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Human-Computer Interaction**
	487	+)))|(% style="width:303px" %)(((
	488	+[[image:Lyuba.jpg||height="209" width="167"]]
387	387
	490	+**Lyuba Zehl**
388	388
389		-Publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data.
	492	+(% class="small" %)Knowledge Systems Engineer
	493	+Dr. rer. nat. (Systems Neuroscience)(%%)
	494	+(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
	495	+)))|(% style="width:303px" %) |(% style="width:303px" %)
390	390
	497	+----
391	391
	499	+
	500	+
392	392	----
393	393
394	394	== Contact ==
...	...	@@ -395,9 +395,16 @@
395	395
396	396	[[curation-support@ebrains.eu>>mailto:curation-support@ebrains.eu]]
397	397
	507	+----
398	398
	509	+== Affiliated laboratories ==
	510	+
	511	+//Institute of Basic Medical Sciences,** **University of Oslo, Norway (PI: Jan G. Bjaalie, Trygve B. Leergaard)//
	512	+
	513	+//Institute of Neuroscience and Medicine (INM-1), Research Centre Jülich, Germany (PI: Timo Dicksheid)//
	514	+
	515	+----
	516	+
	517	+== References ==
	518	+
399	399	{{putFootnotes/}}
400		-~)~)~)~)~)~)
401		-~)~)~)
402		-~)~)~)~)~)~)~)~)~)
403		-~)~)~)~)~)~)

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