Changes for page data-curation-copy

Last modified by eapapp on 2023/07/04 16:46

From 153.1 to 154.1 From 168.1 to 168.2

From version 154.1

edited by ingrreit
on 2023/06/05 10:45

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To version 168.1

edited by eapapp
on 2023/06/06 13:58

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--XWiki.ingrreit
++XWiki.eapapp

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++{{html clean="false"}}
++<div style="float:right;margin-left:1em;margin-bottom:1em">
++    <form title="Search in this collab" target="_blank" action="https://wiki.ebrains.eu/bin/view/Main/Search">
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++        <input type="hidden" name="f_type" value="DOCUMENT">
++        <input type="text" name="text" placeholder="Search here..." size="25" id="searchbox" />
++        <input type="submit" value="&#x1F50E;&#xFE0E;"  id="submit"/>
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++</div>
++{{/html}}
++
++
  == Publishing neuroscience data, models and software via EBRAINS ==
@@ -8,7 +8,6 @@
  {{toc depth="3" start="2"/}}
  {{/box}}
--
  == **Information to get started** ==
  **[[REQUEST CURATION>>https://nettskjema.no/a/277393#/]] to share data, simulations, computational models, and software, - or to add a new version of an existing one. **
@@ -30,7 +30,7 @@
  (% class="box successmessage" %)
  (((
--**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases
++**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases. Reach us at [[curation-support@ebrains.eu>>mailto:curation-support@ebrains.eu]]
  )))
  ----
@@ -55,9 +55,19 @@
  [[image:image-20230326054341-1.png]]
--==== [[[[image:image-20230324171114-2.png||height="176" width="125"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]//All you need to know to share data on EBRAINS.// ====
++(% class="box floatinginfobox" id="share-data-infographic" %)
++(((
++(% style="text-align:center" %)
++//Download our infographic//
++//with all you need to know//
++//to share data on EBRAINS: //
++// //
++[[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
++
++)))
++
  ==== **1. Provide some general information about your dataset** ====
@@ -70,7 +70,9 @@
  This form collects the necessary information needed for us to evaluate whether we can ethically and legally share the data via EBRAINS.
++See below for information about the ethical and legal aspects concerning sharing of human subject data.
++
  ==== **2. Upload data ** ====
@@ -90,7 +90,7 @@
  If a data collection is already uploaded elsewhere, we may link to the already existing repository.
--(% style="color:#1a202c; font-family:inherit; font-size:23px" %)**3. Submit metadata**
++==== **3. Submit metadata** ====
  [[image:https://lh5.googleusercontent.com/WS4T2LhF9znWWChn3Z550agLrrb-KTWdYVsJSv0lh4cGjKbjuN1WV68WER9xkYqi1UqN7KYZz7bImYz3_TpOuTuvma7T192QUiUZoyJVPk1fj5NSDSQh_kpIeBufAOdDtsDRpPKK_P5EDPqRCTAaOTNyCw=s2048||height="91px;" width="91px;"]]**Submit metadata using the **[[EBRAINS Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]** (opt. 1), or through direct interaction with the Knowledge Graph (opt. 2) **
@@ -118,9 +118,17 @@
  Journal publications sufficiently describing the shared data, such as made available through [[Nature Scientific Data>>http://www.nature.com/sdata/about]], [[Elsevier Data in Brief>>http://www.journals.elsevier.com/data-in-brief/]], [[BMC Data note>>https://bmcresnotes.biomedcentral.com/submission-guidelines/preparing-your-manuscript/data-note]] and more, can replace the EBRAINS Data Descriptor.
--==== [[[[image:image-20230324171109-1.png||height="191" width="135"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]//The EBRAINS Data descriptor at-a-glance// ====
++(% class="box floatinginfobox" id="data-descriptor-infographic" %)
++(((
++(% style="text-align:center" %)
++//Download our infographic: //
++//The EBRAINS Data//
++//Descriptor at a glance//
++// //
++[[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
++
++)))
--
  ==== **5. Preview and publish ** ====
@@ -129,20 +129,24 @@
  ----
--==== **Sharing human data ** ====
++==== **Sharing human subject data ** ====
  (% class="box floatinginfobox" %)
  (((
--**Human subject data that can be shared on EBRAINS consists of:**
++**Human subject data that can be shared on EBRAINS:**
++// //
++// - Post-mortem data//
++// - Aggregated data//
++// - Strongly pseudonymized or de-identified subject data//
++//   with a legal basis for sharing (e.g. Informed Consent)//
++// //
--- Post-mortem data
--- Aggregated data
--- Strongly pseudonymized or de-identified subject data with a legal basis for sharing (e.g. Informed Consent)
--
--(% class="small" %)//If you have human data that does not classify as any of the above, please get in touch and we will clarify the available options. //
++(% class="small" %)
++//If you have human data that does not qualify as any of the above,//
++//please [[get in touch>>https://www.ebrains.eu/contact/]] and we will clarify the available options.//
  )))
--Human data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
++Human subject data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
  Post-mortem and aggregated human data can be shared openly, given direct identifiers in the metadata are removed. Strongly pseudonymized and de-identified data can be shared via the Human Data Gateway (HDG).
@@ -167,9 +167,9 @@
  === Step by Step - Software ===
--[[[[image:swc-flow-no-header.png||alt="swc-flow.png"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
++[[[[image:Screenshot 2023-06-06 1122082.png||alt="swc-flow.png" height="136" width="637"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
--~1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions you will find the links to your software and software version entries in the Knowledge Graph.
++~1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions, you will find the links to your software and software version entries in the Knowledge Graph.
 . Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary.
@@ -179,14 +179,9 @@
  For more information, visit our [[Guide to Software Curation in the EBRAINS Knowledge Graph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] or see our infographic below.
--[[[[image:Thumb.png||alt="EBRAINS-Share-Software.pdf" height="203" style="float:left" width="139"]]>>attach:EBRAINS-Share-Software.pdf]]
++(% style="text-align: right;" %)
++==== //Software curation at a glance          //[[[[image:Thumb2.png||alt="EBRAINS-Share-Software.pdf" height="287" width="197"]]>>attach:EBRAINS-Share-Software-4.pdf]] ====
--
--==== //Software curation at a glance// ====
--
--
--
--
  ----
  == **The openMINDS metadata framework** ==
@@ -217,7 +217,7 @@
  (% class="small" %)Curation Scientist
  Neuroscience (PhD)(%%)
--(% class="small" style="color:#4a5568" %)**Behavioral neuroscience and microscopy**
++(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Behavioral neuroscience and microscopy**
  )))|(% style="width:303px" %)(((
  [[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]]
@@ -226,7 +226,7 @@
  (% class="small" %)Curation Scientist,
  Phd Student
  Neuroscience (M. Sc.)(%%)
--(% class="small" style="color:#4a5568" %)**Neuroanatomy and data integration**
++(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and data integration**
  )))|(% style="width:303px" %)(((
  [[image:My project (1).jpg||height="209" width="167"]]
@@ -235,7 +235,7 @@
  (% class="small" %)Curation Scientist,
  Phd Student
  Neuroscience (M. Sc.)(%%)
--(% class="small" style="color:#4a5568" %)**Neuroanatomy and structural connectivity**
++(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and structural connectivity**
  )))|(% style="width:303px" %)(((
  [[image:My project1.jpg||height="209" width="167"]]
@@ -243,7 +243,7 @@
  (% class="small" %)Curation Scientist
  Neurocognitive Psychology (M. Sc.)(%%)
--(% class="small" style="color:#4a5568" %)**Neuroimaging **
++(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroimaging **
  )))
  |(% style="width:303px" %)(((
@@ -254,7 +254,7 @@
  (% class="small" %)Curation Scientist,
  Phd Student
  Neuroscience (M. Sc.)(%%)
--(% class="small" style="color:#4a5568" %)**Neuroanatomy and brain atlases**
++(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and brain atlases**
  )))| | |
@@ -268,7 +268,7 @@
  (% class="small" %)Curation Scientist,
  Phd Student
  Sensors and Cognitive Psychology (M. Sc.)(%%)
--(% class="small" style="color:#4a5568" %)**Human-Computer Interaction**
++(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Human-Computer Interaction**
  )))|(% style="width:303px" %)(((
@@ -286,7 +286,7 @@
  (% class="small" %)Knowledge Systems Engineer
  Dr. rer. nat. (Systems Neuroscience)(%%)
--(% class="small" style="color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
++(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
  )))|(% style="width:303px" %) |
  ----
@@ -294,17 +294,6 @@
  == **Add practical value to your shared data, model or software** ==
--==== **Add a tutorial or learning resource ** ====
--
--(% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %)
--(% style="color:#000000" %)//More information will follow//
--
--
--==== **Create a workflow** ====
--
--(% class="wikigeneratedid" id="H-Workflows5Binformation5D" %)
--(% style="color:#000000" %)//More information will follow//
--
  ----
  === **Showcase shared data, models or software in other services** ===
@@ -329,6 +329,19 @@
  ----
++==== **Add a tutorial or learning resource ** ====
++
++(% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %)
++(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
++
++
++==== **Create a workflow** ====
++
++(% class="wikigeneratedid" id="H-Workflows5Binformation5D" %)
++(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
++
++----
++
  === **The benefits of sharing data ** ===
  By sharing your data via EBRAINS, you gain access to the following benefits:
@@ -337,7 +337,7 @@
--We support you to better follow the FAIR^^ ^^guiding principles for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.  Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product.
++We support you to better follow the [[FAIR^^ ^^guiding principles>>https://www.nature.com/articles/sdata201618]] for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.  Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product.
  ----
@@ -344,7 +344,7 @@
  === **Frequently asked questions ** ===
  (((
--====   ====
++====  ====
  (((
  >The curation process is time consuming and difficult

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