Changes for page data-curation-copy

Last modified by eapapp on 2023/07/04 16:46
From version 155.1
edited by ingrreit
on 2023/06/05 10:46
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To version 167.1
edited by eapapp
on 2023/06/06 13:46
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1 1  == Publishing neuroscience data, models and software via EBRAINS ==
2 2  
3 3  
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8 8  {{toc depth="3" start="2"/}}
9 9  {{/box}}
10 10  
11 -
12 12  == **Information to get started** ==
13 13  
14 14  **[[REQUEST CURATION>>https://nettskjema.no/a/277393#/]] to share data, simulations, computational models, and software, - or to add a new version of an existing one. **
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30 30  
31 31  (% class="box successmessage" %)
32 32  (((
33 -**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases
51 +**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases. Reach us at [[curation-support@ebrains.eu>>mailto:curation-support@ebrains.eu]]
34 34  )))
35 35  
36 36  ----
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55 55  
56 56  [[image:image-20230326054341-1.png]]
57 57  
58 -==== [[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]//All you need to know to share data on EBRAINS.// ====
76 +(% class="box floatinginfobox" id="share-data-infographic" %)
77 +(((
78 +(% style="text-align:center" %)
79 +//Download our infographic//
80 +//with all you need to know//
81 +//to share data on EBRAINS: //
82 +// //
83 +[[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]//
84 +)))
59 59  
60 60  
61 61  ==== **1. Provide some general information about your dataset** ====
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70 70  
71 71  This form collects the necessary information needed for us to evaluate whether we can ethically and legally share the data via EBRAINS.
72 72  
99 +See below for information about the ethical and legal aspects concerning sharing of human subject data.
73 73  
101 +
74 74  ==== **2. Upload data ** ====
75 75  
76 76  
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90 90  If a data collection is already uploaded elsewhere, we may link to the already existing repository.
91 91  
92 92  
93 -(% style="color:#1a202c; font-family:inherit; font-size:23px" %)**3. Submit metadata**
121 +==== **3. Submit metadata** ====
94 94  
95 95  
96 96  [[image:https://lh5.googleusercontent.com/WS4T2LhF9znWWChn3Z550agLrrb-KTWdYVsJSv0lh4cGjKbjuN1WV68WER9xkYqi1UqN7KYZz7bImYz3_TpOuTuvma7T192QUiUZoyJVPk1fj5NSDSQh_kpIeBufAOdDtsDRpPKK_P5EDPqRCTAaOTNyCw=s2048||height="91px;" width="91px;"]]**Submit metadata using the **[[EBRAINS Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]** (opt. 1), or through direct interaction with the Knowledge Graph (opt. 2) **
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129 129  
130 130  ----
131 131  
132 -==== **Sharing human data ** ====
160 +==== **Sharing human subject data ** ====
133 133  
134 134  (% class="box floatinginfobox" %)
135 135  (((
136 -**Human subject data that can be shared on EBRAINS consists of:**
164 +**Human subject data that can be shared on EBRAINS:**
137 137  
138 138  - Post-mortem data
139 139  - Aggregated data
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142 142  (% class="small" %)//If you have human data that does not classify as any of the above, please get in touch and we will clarify the available options. //
143 143  )))
144 144  
145 -Human data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
173 +Human subject data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
146 146  
147 147  Post-mortem and aggregated human data can be shared openly, given direct identifiers in the metadata are removed. Strongly pseudonymized and de-identified data can be shared via the Human Data Gateway (HDG).
148 148  
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167 167  
168 168  === Step by Step - Software ===
169 169  
170 -[[[[image:swc-flow-no-header.png||alt="swc-flow.png"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
198 +[[[[image:Screenshot 2023-06-06 1122082.png||alt="swc-flow.png" height="136" width="637"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
171 171  
172 -~1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions you will find the links to your software and software version entries in the Knowledge Graph.
200 +~1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions, you will find the links to your software and software version entries in the Knowledge Graph.
173 173  
174 174  2. Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary.
175 175  
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179 179  
180 180  For more information, visit our [[Guide to Software Curation in the EBRAINS Knowledge Graph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] or see our infographic below.
181 181  
182 -[[[[image:Thumb.png||alt="EBRAINS-Share-Software.pdf" height="155" style="float:left" width="106"]]>>attach:EBRAINS-Share-Software.pdf]]
210 +(% style="text-align: right;" %)
211 +==== //Software curation at a glance          //[[[[image:Thumb2.png||alt="EBRAINS-Share-Software.pdf" height="287" width="197"]]>>attach:EBRAINS-Share-Software-4.pdf]] ====
183 183  
184 -
185 -
186 -==== //Software curation at a glance// ====
187 -
188 -
189 -
190 -
191 191  ----
192 192  
193 193  == **The openMINDS metadata framework** ==
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218 218  
219 219  (% class="small" %)Curation Scientist
220 220  Neuroscience (PhD)(%%)
221 -(% class="small" style="color:#4a5568" %)**Behavioral neuroscience and microscopy**
243 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Behavioral neuroscience and microscopy**
222 222  )))|(% style="width:303px" %)(((
223 223  [[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]]
224 224  
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227 227  (% class="small" %)Curation Scientist,
228 228  Phd Student
229 229  Neuroscience (M. Sc.)(%%)
230 -(% class="small" style="color:#4a5568" %)**Neuroanatomy and data integration**
252 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and data integration**
231 231  )))|(% style="width:303px" %)(((
232 232  [[image:My project (1).jpg||height="209" width="167"]]
233 233  
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236 236  (% class="small" %)Curation Scientist,
237 237  Phd Student
238 238  Neuroscience (M. Sc.)(%%)
239 -(% class="small" style="color:#4a5568" %)**Neuroanatomy and structural connectivity**
261 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and structural connectivity**
240 240  )))|(% style="width:303px" %)(((
241 241  [[image:My project1.jpg||height="209" width="167"]]
242 242  
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244 244  
245 245  (% class="small" %)Curation Scientist
246 246  Neurocognitive Psychology (M. Sc.)(%%)
247 -(% class="small" style="color:#4a5568" %)**Neuroimaging **
269 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroimaging **
248 248  )))
249 249  
250 250  |(% style="width:303px" %)(((
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255 255  (% class="small" %)Curation Scientist,
256 256  Phd Student
257 257  Neuroscience (M. Sc.)(%%)
258 -(% class="small" style="color:#4a5568" %)**Neuroanatomy and brain atlases**
280 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and brain atlases**
259 259  )))| | |
260 260  
261 261  
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269 269  (% class="small" %)Curation Scientist,
270 270  Phd Student
271 271  Sensors and Cognitive Psychology (M. Sc.)(%%)
272 -(% class="small" style="color:#4a5568" %)**Human-Computer Interaction**
294 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Human-Computer Interaction**
273 273  )))|(% style="width:303px" %)(((
274 274  
275 275  
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287 287  
288 288  (% class="small" %)Knowledge Systems Engineer
289 289  Dr. rer. nat. (Systems Neuroscience)(%%)
290 -(% class="small" style="color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
312 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
291 291  )))|(% style="width:303px" %) |
292 292  
293 293  ----
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295 295  == **Add practical value to your shared data, model or software** ==
296 296  
297 297  
298 -==== **Add a tutorial or learning resource ** ====
299 -
300 -(% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %)
301 -(% style="color:#000000" %)//More information will follow//
302 -
303 -
304 -==== **Create a workflow** ====
305 -
306 -(% class="wikigeneratedid" id="H-Workflows5Binformation5D" %)
307 -(% style="color:#000000" %)//More information will follow//
308 -
309 309  ----
310 310  
311 311  === **Showcase shared data, models or software in other services** ===
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330 330  
331 331  ----
332 332  
344 +==== **Add a tutorial or learning resource ** ====
345 +
346 +(% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %)
347 +(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
348 +
349 +
350 +==== **Create a workflow** ====
351 +
352 +(% class="wikigeneratedid" id="H-Workflows5Binformation5D" %)
353 +(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
354 +
355 +----
356 +
333 333  === **The benefits of sharing data ** ===
334 334  
335 335  By sharing your data via EBRAINS, you gain access to the following benefits:
... ... @@ -338,7 +338,7 @@
338 338  
339 339  
340 340  
341 -We support you to better follow the FAIR^^ ^^guiding principles for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.  Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product.
365 +We support you to better follow the [[FAIR^^ ^^guiding principles>>https://www.nature.com/articles/sdata201618]] for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.  Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product.
342 342  
343 343  ----
344 344  
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345 345  === **Frequently asked questions ** ===
346 346  
347 347  (((
348 -==== ====
372 +==== ====
349 349  
350 350  (((
351 351  >The curation process is time consuming and difficult
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