Changes for page data-curation-copy

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edited by eapapp
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1 -test-ir2
1 +data-curation-copy
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1 -CollabClass
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1 -== Publishing neuroscience data, models and software via EBRAINS ==
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2 2  
3 3  
20 +(% class="wikigeneratedid" id="HPublishingneurosciencedata2CmodelsandsoftwareviaEBRAINS" %)
21 +(% style="font-size:2em" %)**Publishing neuroscience data, models and software via EBRAINS**
22 +
4 4  (% class="wikigeneratedid" %)
5 5  The aim of this collab is to provide you with detailed information about publishing data, simulations, computational models, and software via EBRAINS. If you want a quick overview of the sharing process, see [[https:~~/~~/ebrains.eu/service/share-data>>https://ebrains.eu/service/share-data]].
6 6  
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8 8  {{toc depth="3" start="2"/}}
9 9  {{/box}}
10 10  
11 -
12 12  == **Information to get started** ==
13 13  
14 14  **[[REQUEST CURATION>>https://nettskjema.no/a/277393#/]] to share data, simulations, computational models, and software, - or to add a new version of an existing one. **
... ... @@ -16,8 +16,10 @@
16 16  Have you already published your data somewhere else? You can increase the exposure and impact of your shared dataset by also listing it on EBRAINS.
17 17  
18 18  
19 -(% style="text-align: center;" %)
20 -Search existing data, models and software in [[the EBRAINS Knowledge Graph Search>>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]]
37 +(% class="box" style="text-align: center; font-size: 1.2em" %)
38 +(((
39 +Search existing data, models and software in the [[EBRAINS Knowledge Graph>>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]]
40 +)))
21 21  
22 22  
23 23  EBRAINS accepts data from all modalities and from all species, as well as models, software, web services and metadata models (collectively referred to as research products) for sharing. You'll find detailed information about how to share each research product below. 
... ... @@ -30,7 +30,7 @@
30 30  
31 31  (% class="box successmessage" %)
32 32  (((
33 -**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases
53 +**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases. Reach us at [[curation-support@ebrains.eu>>mailto:curation-support@ebrains.eu]]
34 34  )))
35 35  
36 36  ----
... ... @@ -55,49 +55,70 @@
55 55  
56 56  [[image:image-20230326054341-1.png]]
57 57  
58 -==== [[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]//All you need to know to share data on EBRAINS.// ====
78 +(% class="box floatinginfobox" id="share-data-infographic" %)
79 +(((
80 +(% style="text-align:center" %)
81 +//Download our infographic//
82 +//with all you need to know//
83 +//to share data on EBRAINS: //
84 +// //
85 +[[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
86 +)))
59 59  
60 60  
61 61  ==== **1. Provide some general information about your dataset** ====
62 62  
63 63  
64 -[[image:https://lh3.googleusercontent.com/zh7TvO6w04YGW9jIhfhmdT6CexdGs-AWOLfJXKRq7-tdHOu6ar1rOQx8o4rZevrjXqgPZ7-Ejv4b6X9XpgXuHpdUXi-mBTHIUnv5Vz-DktHt0sP-PZ3gE8XgZid3TV3swV1uTCBhHx11ge0pjP7RVxswGQ=s2048||height="85px;" width="91px;"]]** Fill in the [[Curation request form>>https://nettskjema.no/a/277393#/]]. **
65 65  
93 +(% style="margin-right:10px" %)[[image:https://lh3.googleusercontent.com/zh7TvO6w04YGW9jIhfhmdT6CexdGs-AWOLfJXKRq7-tdHOu6ar1rOQx8o4rZevrjXqgPZ7-Ejv4b6X9XpgXuHpdUXi-mBTHIUnv5Vz-DktHt0sP-PZ3gE8XgZid3TV3swV1uTCBhHx11ge0pjP7RVxswGQ=s2048||height="85px;" width="91px;"]](%%)** Fill in the [[Curation request form>>https://nettskjema.no/a/277393#/]]. **
94 +
66 66  This form collects preliminary information about your data, allowing us to assess whether the dataset fits within the scope of EBRAINS. The submission generates a curation ID allowing us to track the case.
67 67  
68 68  
69 -[[image:https://lh6.googleusercontent.com/yw442oS6BwZOlY-_0BoVxyCW3DrdcJ5ogCes92iOD16_rgNEVk56aNMDaVWXFfBLYv24bHzmGgBF9wg0szjH70xzuRTqxoQAeuy3knNO7axCHoyZDXwtyTcMgFnYwbOYxOT29LK-zchrUKLW6Mle93kOkQ=s2048||height="94px;" width="94px;"]]**Fill in the [[Ethics and Regulatory compliance form>>https://nettskjema.no/a/224765]]**.
98 +(% style="margin-right:10px" %)[[image:https://lh6.googleusercontent.com/yw442oS6BwZOlY-_0BoVxyCW3DrdcJ5ogCes92iOD16_rgNEVk56aNMDaVWXFfBLYv24bHzmGgBF9wg0szjH70xzuRTqxoQAeuy3knNO7axCHoyZDXwtyTcMgFnYwbOYxOT29LK-zchrUKLW6Mle93kOkQ=s2048||height="94px;" width="94px;"]](%%)**Fill in the [[Ethics and Regulatory compliance form>>https://nettskjema.no/a/224765]]**.
70 70  
71 71  This form collects the necessary information needed for us to evaluate whether we can ethically and legally share the data via EBRAINS.
72 72  
102 +See below for information about the ethical and legal aspects concerning sharing of human subject data.
73 73  
104 +
74 74  ==== **2. Upload data ** ====
75 75  
107 +(% class="box floatinginfobox" id="share-data-infographic" %)
108 +(((
109 +(% style="text-align:center" %)
110 +//Download our infographic//
111 +//with guidelines
112 +on data organization: //
76 76  
77 -[[image:https://lh5.googleusercontent.com/sieKO-kW8O18iPaUyonwyo4UfHBmtc2E9BDnjbx52j6J_uGmm-OzGAo7sloMk3sYwKa6QW3hYQsOA9N4H7uGQpca088Wrk0Nurpt_J3B0-NSbcaPNdZIh21otQcG6jnAxLGiKoEvkTyaDGTMk3fu7me8mQ=s2048||height="94px;" width="94px;"]]**Ensure data is structured consistently prior to upload. **
114 +(% style="text-align:center" %)
115 +[[[[image:image-20230621121014-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/lib/f5cf4964-f095-49bd-8c34-e4ffda05a497/file/ebrains-infographic-data-organisation.pdf/]]
116 +)))
78 78  
79 -We look for organized data, not organized according to our standard. This is to support the broadest degree of sharing possible. We do however require that the data is organized in a consistent and precise manner. Please see our// //[[collection of guidelines on data organization>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] for further guidance.
118 +(% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/sieKO-kW8O18iPaUyonwyo4UfHBmtc2E9BDnjbx52j6J_uGmm-OzGAo7sloMk3sYwKa6QW3hYQsOA9N4H7uGQpca088Wrk0Nurpt_J3B0-NSbcaPNdZIh21otQcG6jnAxLGiKoEvkTyaDGTMk3fu7me8mQ=s2048||height="94px;" width="94px;"]](%%)**Ensure data is structured consistently prior to upload. **
80 80  
81 -[[image:https://lh5.googleusercontent.com/EWtYwfVlbeC-jqPasgmzidqc50GrkKIEgwXeUeql8aaMHIukmFdWEy0nufVWWATbxDDK3XwwZEDmASrbpCsBk1u0HpAd8x4ZgAMsMPRcWyrb9etlV6FgKE_QN2e6SqKxHE0rzkR8uI1rRW_5z21TFGYVnw=s2048||height="91px;" width="91px;"]]**Upload data to EBRAINS Storage, either using a drag-and-drop solution (opt. 1) or an interactive python script (opt. 2).**
120 +We look for organized data, not organized according to our standard. This is to support the broadest degree of sharing possible. We do however require that the data is organized in a consistent and precise manner. Please see our// //[[guidelines on data organization>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] for further guidance.
82 82  
83 -//Opt. 1. //For smaller datasets with a reasonable amount of files, we recommend using the Collab-Bucket solution (drag-and-drop). A Collab Bucket must first be assigned to a dataset, which happens when a datasets is accepted for sharing.
122 +(% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/EWtYwfVlbeC-jqPasgmzidqc50GrkKIEgwXeUeql8aaMHIukmFdWEy0nufVWWATbxDDK3XwwZEDmASrbpCsBk1u0HpAd8x4ZgAMsMPRcWyrb9etlV6FgKE_QN2e6SqKxHE0rzkR8uI1rRW_5z21TFGYVnw=s2048||height="91px;" width="91px;"]](%%)**Upload data to EBRAINS Storage, either using a drag-and-drop solution (opt. 1) or an interactive python script (opt. 2).**
84 84  
85 -//Opt. 2. //For larger datasets or datasets with a large amount of files, we recommend using a programmatic approach. The [[python script>>https://github.com/eapapp/ebrains-data-storage/tree/main/data-proxy]] is interactive and does not require any additional programming.
124 +**Opt. 1. **For smaller datasets with a reasonable amount of files, we recommend using the Collab-Bucket solution (drag-and-drop). A Collab Bucket must first be assigned to a dataset, which happens when a datasets is accepted for sharing.
86 86  
126 +**Opt. 2. **For larger datasets or datasets with a large amount of files, we recommend using a programmatic approach. The [[python script>>https://github.com/eapapp/ebrains-data-storage/tree/main/data-proxy]] is interactive and does not require any additional programming.
87 87  
128 +
88 88  EBRAINS offers secure, long-term storage at [[CSCS Swiss National Supercomputing Centre>>url:https://www.cscs.ch/]], with currently no upper limit of storage capacity. 
89 89  
90 90  If a data collection is already uploaded elsewhere, we may link to the already existing repository.
91 91  
92 92  
93 -(% style="color:#1a202c; font-family:inherit; font-size:23px" %)**3. Submit metadata**
134 +==== **3. Submit metadata** ====
94 94  
95 95  
96 -[[image:https://lh5.googleusercontent.com/WS4T2LhF9znWWChn3Z550agLrrb-KTWdYVsJSv0lh4cGjKbjuN1WV68WER9xkYqi1UqN7KYZz7bImYz3_TpOuTuvma7T192QUiUZoyJVPk1fj5NSDSQh_kpIeBufAOdDtsDRpPKK_P5EDPqRCTAaOTNyCw=s2048||height="91px;" width="91px;"]]**Submit metadata using the **[[EBRAINS Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]** (opt. 1), or through direct interaction with the Knowledge Graph (opt. 2) **
137 +(% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/WS4T2LhF9znWWChn3Z550agLrrb-KTWdYVsJSv0lh4cGjKbjuN1WV68WER9xkYqi1UqN7KYZz7bImYz3_TpOuTuvma7T192QUiUZoyJVPk1fj5NSDSQh_kpIeBufAOdDtsDRpPKK_P5EDPqRCTAaOTNyCw=s2048||height="91px;" width="91px;"]](%%)**Submit metadata using the **[[EBRAINS Metadata Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]** (opt. 1), or directly via the Knowledge Graph (opt. 2) **
97 97  
98 -//Opt. 1.// Manually submit the minimal required metadata via the [[EBRAINS Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. The minimal required metadata covers extended bibliographic information necessary to publish your dataset on EBRAINS. The submitted information, including uploaded files, will be sent to the Curation team automatically
139 +**Opt. 1.** Manually submit the minimal required metadata via the [[EBRAINS Metadata Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. The minimal required metadata covers extended bibliographic information necessary to publish your dataset on EBRAINS. The submitted information, including uploaded files, will be sent to the Curation team automatically
99 99  
100 -//Opt. 2.// To go beyond the minimal required metadata, you can directly interact with the Knowledge Graph (KG) in your private space. Within the private space, you can upload metadata and interact with them, moreover you can connect your metadata to existing publicly accessible entries. Access to your private space is granted upon the initiation of the curation process. You can access your private space via:
141 +**Opt. 2.** To go beyond the minimal required metadata, you can directly interact with the Knowledge Graph (KG) in your private space. Within the private space, you can upload metadata and interact with them, moreover you can connect your metadata to existing publicly accessible entries. Access to your private space is granted upon the initiation of the curation process. You can access your private space via:
101 101  
102 102  * Knowledge Graph Editor: This User Interface allows you to manually enter metadata into your KG space and validate metadata that are programmatically uploaded. The Editor contains a basic set of openMINDS metadata templates, but can be extended to the full openMINDS metadata model on request. Access is granted once the request is accepted.
103 103  * [[Fairgraph>>https://fairgraph.readthedocs.io/en/stable/]]: This is the recommended software tool for programmatic interaction with the KG. It allows you to programmatically upload openMINDS compliant metadata into your KG space and interact with existing metadata.
... ... @@ -106,10 +106,12 @@
106 106  Datasets published through the EBRAINS Knowledge Graph have to be registered using **openMINDS compliant metadata** delivered as JSON-LD files. See this summary table for an overview of [[the minimally required openMINDS properties for publishing>>https://drive.ebrains.eu/lib/47995dbc-f576-4008-a76c-eefbfd818529/file/ebrains-minimum-required-metadata.xlsx]] on EBRAINS.
107 107  
108 108  
109 -==== **4. Write a Data Descriptor ** ====
150 +==== **4. Write a Data Descriptor** ====
110 110  
111 -[[image:https://lh4.googleusercontent.com/lMYEKOXzejbBydOdotWWteXQo7j363xRyntBGjcPZVEdtIU1CJYX7q1STpdr2JPZK4hpWWXk20UlkUOqDGL5kX6vnQVBSdrfUo6EGfXOwpuGq1Uygv0tTZJ0lRO6voJvg56QC2mufvjAcRXGfAKFOjtc6w=s2048||height="94px;" width="94px;"]]**Write a data descriptor by filling in **[[this template>>https://drive.ebrains.eu/f/a2e07c95b1a54090bbbc/?dl=1]]** . **
112 112  
153 +
154 +(% style="margin-right:10px" %)[[image:https://lh4.googleusercontent.com/lMYEKOXzejbBydOdotWWteXQo7j363xRyntBGjcPZVEdtIU1CJYX7q1STpdr2JPZK4hpWWXk20UlkUOqDGL5kX6vnQVBSdrfUo6EGfXOwpuGq1Uygv0tTZJ0lRO6voJvg56QC2mufvjAcRXGfAKFOjtc6w=s2048||height="94px;" width="94px;"]](%%)**Write a data descriptor by filling in **[[this template>>https://drive.ebrains.eu/f/a2e07c95b1a54090bbbc/?dl=1]]**.**
155 +
113 113  The Data Descriptor is a document helping others interpret and reuse (and prevent misuse) of your data, and is critical to achieve a basic level of FAIR. The document will be uploaded in the repository of the data, shared as a PDF. 
114 114  
115 115  See our infographic about the data descriptor for inspiration or guidance.
... ... @@ -118,274 +118,343 @@
118 118  
119 119  Journal publications sufficiently describing the shared data, such as made available through [[Nature Scientific Data>>http://www.nature.com/sdata/about]], [[Elsevier Data in Brief>>http://www.journals.elsevier.com/data-in-brief/]], [[BMC Data note>>https://bmcresnotes.biomedcentral.com/submission-guidelines/preparing-your-manuscript/data-note]] and more, can replace the EBRAINS Data Descriptor.
120 120  
121 -==== [[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]//The EBRAINS Data descriptor at-a-glance// ====
122 122  
165 +(% class="box floatinginfobox" id="data-descriptor-infographic" %)
166 +(((
167 +(% style="text-align:center" %)
168 +//Download our infographic
169 +about the EBRAINS Data//
170 +//Descriptor//
171 +// //
172 +[[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
173 +)))
123 123  
124 -==== **5. Preview and publish ** ====
175 +==== **5. Preview and publish** ====
125 125  
126 126  
127 -[[image:https://lh4.googleusercontent.com/XqT26Q4yWJK26cjtjhI4ToXoZZMxhT9LimG4Hk9mePxy0-KPKgpVIzcuiP5mOQowBgf2JjkrWUq2VbCmafWWZPJplEZALnFOlCZHLlQgzOx7fFwoBteyi_IlMLkPBS9vtOcdNIZ59HyLnQz4RsTQ0lUrSw=s2048||height="91px;" width="91px;"]]**Preview and approve the release of your dataset. **Once a Curator has assembled the dataset in the EBRAINS Knowledge Graph, combining the data, metadata and data descriptor, the data provider will receive a private URL for previewing the dataset prior to release. We need an official approval from the data custodian{{footnote}}The Data Custodian is responsible for the content and quality of the Data and metadata, and is the person to be contacted by EBRAINS CS in case of any misconduct related to the Data. It is the obligation of a Data Custodian to keep EBRAINS informed about changes in the contact information of the authors of the Datasets provided by them ([[EBRAINS Data Provision Protocol - version 1.1>>https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]]).{{/footnote}} to release the dataset. Once released, a [[DataCite DOI>>https://datacite.org/]] will be generated for the dataset. If the identical data collection has received a DOI elsewhere, we recommend re-using the already issued DOI.
178 +(% style="margin-right:10px" %)[[image:https://lh4.googleusercontent.com/XqT26Q4yWJK26cjtjhI4ToXoZZMxhT9LimG4Hk9mePxy0-KPKgpVIzcuiP5mOQowBgf2JjkrWUq2VbCmafWWZPJplEZALnFOlCZHLlQgzOx7fFwoBteyi_IlMLkPBS9vtOcdNIZ59HyLnQz4RsTQ0lUrSw=s2048||height="91px;" width="91px;"]](%%)**Preview and approve the release of your dataset. **
128 128  
180 +Once a Curator has assembled the dataset in the EBRAINS Knowledge Graph, combining the data, metadata and data descriptor, the data provider will receive a private URL for previewing the dataset prior to release. We need an official approval from the data custodian{{footnote}}The Data Custodian is responsible for the content and quality of the Data and metadata, and is the person to be contacted by EBRAINS CS in case of any misconduct related to the Data. It is the obligation of a Data Custodian to keep EBRAINS informed about changes in the contact information of the authors of the Datasets provided by them ([[EBRAINS Data Provision Protocol - version 1.1>>https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]]).{{/footnote}} to release the dataset. Once released, a [[DataCite DOI>>https://datacite.org/]] will be generated for the dataset. If the identical data collection has received a DOI elsewhere, we recommend re-using the already issued DOI.
129 129  
130 -----
131 131  
132 -==== **Sharing human data ** ====
133 133  
134 -(% class="box floatinginfobox" %)
135 -(((
136 -**Human subject data that can be shared on EBRAINS:**
137 137  
138 -- Post-mortem data
139 -- Aggregated data
140 -- Strongly pseudonymized or de-identified subject data with a legal basis for sharing (e.g. Informed Consent)
185 +----
141 141  
142 -(% class="small" %)//If you have human data that does not classify as any of the above, please get in touch and we will clarify the available options. //
143 -)))
187 +=== Step by Step - Models ===
144 144  
145 -Human data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
146 146  
147 -Post-mortem and aggregated human data can be shared openly, given direct identifiers in the metadata are removed. Strongly pseudonymized and de-identified data can be shared via the Human Data Gateway (HDG).
190 +==== 1. Start early ====
148 148  
149 -The Human Data Gateway (HDG) was introduced in February 2021 as a response to the needs of multiple data providers who are bringing human subject data to EBRAINS. HDG covers the sharing of strongly pseudonymized or de-identified data, a limited range human subject data without direct identifiers and with very few indirect identifiers.
192 +It is not necessary to wait until you are ready to publish to register your model with EBRAINS.
150 150  
151 -The HDG adds an an authentication layer on top of the data. This means that **data users **must request access to the data (via their EBRAINS account) and will receive access provided they actively accept the [[EBRAINS Access Policy>>https://ebrains.eu/terms#access-policy]], the [[EBRAINS General Terms of Use>>https://ebrains.eu/terms#general-terms-of-use]], and the [[EBRAINS Data Use Agreement>>https://ebrains.eu/terms#data-use-agreement]]. The account holder also have to accept that information about their request and access to specific data under HDG is being tracked and stored. **Data owners** must be aware that sharing under the HDG affects the legal responsibilities for the data. They must agree to joint control of the data (see the [[Data Provision Protocol v1>>url:https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]], section 1.4 - 1.5) and the Data Protection Officers of the responsible institutions must have accepted that the data can be shared under HDG.
194 +By registering a model early in your project, you can take advantage of EBRAINS tools
195 +to keep track of simulations and to share them with your collaborators.
152 152  
153 -The HDG is an extension of the existing services and does not replace the future EBRAINS Service for sensitive data (planned for 2024) which is outside the domain of the current EBRAINS Data and Knowledge services.
197 +==== 2. Create/choose a Collab workspace ====
154 154  
199 +We use EBRAINS Collaboratory "collab" workspaces to help manage the model curation process.
155 155  
156 -----
201 +In particular, we use collab membership (the "Team") to control who can view or edit your model metadata prior to publication.
157 157  
158 -=== Step by Step - Models ===
203 +It is up to you whether you create a new collab for each model, or reuse an existing collab
204 +(it is no problem to have multiple models associated with a single collab).
159 159  
206 +Collabs are also useful for storing simulation results, adding documentation for your model,
207 +and/or providing tutorials in Jupyter notebooks.
160 160  
161 -~1. Request curation using the [[Curation request form>>https://nettskjema.no/a/277393#/]]. You will be contacted by a curator with more information.
209 +==== 3. Upload code ====
162 162  
211 +We recommend storing model code and/or configuration files in an online Git repository, for example on GitHub.
212 +This repository should be public when you publish the model, but a private repository can be used for model development.
163 163  
164 -//Additional information will be added soon.//
214 +Alternatively, you can upload code to the Collab Drive or Bucket storage.
165 165  
166 -----
216 +==== 4.Submit metadata ====
167 167  
168 -=== Step by Step - Software ===
218 +We recommend submitting metadata using the Model Catalog app, installed in your collab.
169 169  
170 -[[[[image:swc-flow-no-header.png||alt="swc-flow.png"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
220 +To install it:
171 171  
172 -~1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions you will find the links to your software and software version entries in the Knowledge Graph.
222 +1. click the "+ Create" button
223 +1. in the "Create Page" form, add a title, such as "Model Catalog", and select "Community App", then click "Create"
224 +1. scroll down until you find the "Model Catalog" app, click "Select", then "Save & View"
173 173  
174 -2. Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary.
226 +You will then see a table of all the models and validation tests associated with this collab.
227 +If this is your first time using the app, the table will probably be empty.
228 +To add your model, click "+", fill in the form, then click "Add model".
175 175  
176 -3. After a quality check, we integrate and publish the information to the Knowledge Graph. Your software is then searchable and usable for the neuroscience community.
230 +As development of your model proceeds, you can easily register new versions of the code,
231 +and new parameterizations, by clicking "Add new version".
177 177  
178 -If you want to add a new version to an already curated software, please request this via the [[curation request form>>https://nettskjema.no/a/277393]].
233 +If you prefer not to use the app, you can instead fill in the [[Curation request form>>https://nettskjema.no/a/277393#/]].,
234 +and you will be contacted by e-mail with further instructions.
179 179  
180 -For more information, visit our [[Guide to Software Curation in the EBRAINS Knowledge Graph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] or see our infographic below.
236 +==== 5. Provide a reference dataset ====
181 181  
182 -[[[[image:Thumb.png||alt="EBRAINS-Share-Software.pdf" height="155" style="float:left" width="106"]]>>attach:EBRAINS-Share-Software.pdf]]
238 +Once you're ready to publish your model entry in the EBRAINS Knowledge Graph,
239 +we encourage you to provide a dataset containing the simulation results produced by your model,
240 +following the process under "Step by step - Data" above.
183 183  
242 +These reference data will be linked to the model, and will be helpful to anyone trying to
243 +reuse your model.
184 184  
245 +We will soon introduce a "Reproducible" badge for all models that include a reference dataset,
246 +and whose simulation results can be reproduced by an EBRAINS curator.
185 185  
186 -==== //Software curation at a glance// ====
248 +==== 6. Request publication, preview and publish ====
187 187  
250 +Until you request your model entry to be published in the EBRAINS Knowledge Graph,
251 +only members of the collab will be able to view the model entry, in the Model Catalog app
252 +or using the Model Validation Python client.
188 188  
254 +After publication, the model will appear in the [[EBRAINS public search results>>https://search.kg.ebrains.eu/?category=Model||rel="noopener noreferrer" target="_blank"]], and will receive a DOI.
189 189  
256 +To request publication, [[contact EBRAINS support>>https://ebrains.eu/support||rel="noopener noreferrer" target="_blank"]], providing the collab name and the model name or ID.
190 190  
191 -----
192 192  
193 -== **The openMINDS metadata framework** ==
259 +Curators will then perform a number of checks:
194 194  
195 -openMINDS (open Metadata Initiative for Neuroscience Data Structures) is a community-driven, open-source metadata framework for graph database systems, such as the EBRAINS Knowledge Graph. It is composed of linked metadata models, libraries of serviceable metadata instances, and supportive tooling ([[openMINDS Python>>url:https://pypi.org/project/openMINDS/]], openMINDS Matlab). For exploring the openMINDS schemas, go to the [[HTML documentation>>url:https://humanbrainproject.github.io/openMINDS/]]. For a full overview of the framework, go to [[the openMINDS collab>>url:https://wiki.ebrains.eu/bin/view/Collabs/openminds/]] or the [[GitHub repository>>https://github.com/HumanBrainProject/openMINDS]].
261 +1. Does the model description provide sufficient context to understand the purpose and use of the model?
262 +1. Does the code repository contain a licence file, explaining the conditions for reusing the code?
263 +1. Does the model have a clearly defined version identifier (e.g. v1.0)? For models in a Git repository, the version identifier should match the name of a tag or release.
196 196  
197 -For feedback, requests, or contributions, please get in touch with the openMINDS development team via
265 +The curators will also take a snapshot of your model code.
198 198  
199 -* the support-email: [[openminds@ebrains.eu>>path:mailto:openminds@ebrains.eu]]
200 -* the [[GitHub issue tracker>>url:https://github.com/HumanBrainProject/openMINDS/issues]]
201 -* the INCF NeuroStars [[openMINDS Community Forum>>url:https://neurostars.org/t/openminds-community-forum-virtual/20156]]
267 +* For models in public Git repositories, we archive a copy of the repository in [[Software Heritage>>https://www.softwareheritage.org/||rel="noopener noreferrer" target="_blank"]].
268 +* For models in a collab Bucket or Drive, we make a read-only copy of the code in a public container in the EBRAINS repository.
202 202  
270 +Once this is done, you will be invited to review a preview of how the model entry will appear in the KG Search,
271 +and will have the opportunity to request modifications prior to approval and publication.
272 +
203 203  ----
204 204  
205 -== **The curation team: meet the curators** ==
275 +=== Step by Step - Software ===
206 206  
207 -The EBRAINS curators help researchers publish their research using the EBRAINS Research Infrastructure. A curator’s job is similar to the job of an editor of a scientific journal, checking the data is organized, understandable, accessible and sufficiently described.
208 208  
209 -The curators in EBRAINS are located in Oslo, Jülich, Trier and Paris. 
210 -
278 +(% class="box floatinginfobox" id="software-curation-infographic" %)
279 +(((
280 +(% style="text-align:center" %)
281 +//Software curation at a glance//
282 +// //
283 +[[[[image:Thumb2.png||alt="EBRAINS-Share-Software.pdf" height="287" width="197"]]>>attach:EBRAINS-Share-Software-4.pdf]]
284 +)))
211 211  
212 -**Located in Norway:**
286 +(% style="margin-left:15px" %)[[[[image:Screenshot 2023-06-06 1122082.png||alt="swc-flow.png" height="136" width="637"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
213 213  
214 -|(% style="width:303px" %)(((
215 -[[image:My project2.jpg||height="209" width="167"]]
288 +1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions, you will find the links to your software and software version entries in the Knowledge Graph.
289 +1. Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary.
290 +1. After a quality check, we integrate and publish the information to the Knowledge Graph. Your software is then searchable and usable for the neuroscience community.
216 216  
217 -**Archana Golla**
292 +If you want to add a new version to an already curated software, please request this via the [[curation request form>>https://nettskjema.no/a/277393]].
218 218  
219 -(% class="small" %)Curation Scientist
220 -Neuroscience (PhD)(%%)
221 -(% class="small" style="color:#4a5568" %)**Behavioral neuroscience and microscopy**
222 -)))|(% style="width:303px" %)(((
223 -[[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]]
294 +For more information, visit our [[Guide to Software Curation in the EBRAINS Knowledge Graph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] or see our infographic on the right.
224 224  
225 -**Camilla H. Blixhavn**
226 226  
227 -(% class="small" %)Curation Scientist,
228 -Phd Student
229 -Neuroscience (M. Sc.)(%%)
230 -(% class="small" style="color:#4a5568" %)**Neuroanatomy and data integration**
231 -)))|(% style="width:303px" %)(((
232 -[[image:My project (1).jpg||height="209" width="167"]]
297 +----
233 233  
234 -**Ingrid Reiten**
299 +=== Sharing human subject data ===
235 235  
236 -(% class="small" %)Curation Scientist,
237 -Phd Student
238 -Neuroscience (M. Sc.)(%%)
239 -(% class="small" style="color:#4a5568" %)**Neuroanatomy and structural connectivity**
240 -)))|(% style="width:303px" %)(((
241 -[[image:My project1.jpg||height="209" width="167"]]
301 +(% class="box floatinginfobox" %)
302 +(((
303 +**Human subject data that can be shared on EBRAINS:**
304 +// //
305 +// - Post-mortem data//
306 +// - Aggregated data//
307 +// - Strongly pseudonymized or de-identified subject data//
308 +// with a legal basis for sharing (e.g. Informed Consent)//
309 +// //
242 242  
243 -**Sophia Pieschnik**
244 -
245 -(% class="small" %)Curation Scientist
246 -Neurocognitive Psychology (M. Sc.)(%%)
247 -(% class="small" style="color:#4a5568" %)**Neuroimaging **
311 +(% class="small" %)
312 +//If you have human data that does not qualify as any of the above,//
313 +//please [[get in touch>>https://www.ebrains.eu/contact/]] and we will clarify the available options.//
248 248  )))
249 249  
250 -|(% style="width:303px" %)(((
251 -[[image:My project.jpg||height="209" width="167"]]
252 252  
253 -**Heidi Kleven**
317 +Human subject data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
254 254  
255 -(% class="small" %)Curation Scientist,
256 -Phd Student
257 -Neuroscience (M. Sc.)(%%)
258 -(% class="small" style="color:#4a5568" %)**Neuroanatomy and brain atlases**
259 -)))| | |
319 +Post-mortem and aggregated human data can be shared openly, given direct identifiers in the metadata are removed. Strongly pseudonymized and de-identified data can be shared via the Human Data Gateway (HDG).
260 260  
261 -
262 -\\**Located in Germany:**
321 +The Human Data Gateway (HDG) was introduced in February 2021 as a response to the needs of multiple data providers who are bringing human subject data to EBRAINS. HDG covers the sharing of strongly pseudonymized or de-identified data, a limited range human subject data without direct identifiers and with very few indirect identifiers.
263 263  
264 -|(% style="width:303px" %)(((
265 -[[image:My project (2).jpg||height="209" width="167"]]
323 +The HDG adds an an authentication layer on top of the data. This means that **data users **must request access to the data (via their EBRAINS account) and will receive access provided they actively accept the [[EBRAINS Access Policy>>https://ebrains.eu/terms#access-policy]], the [[EBRAINS General Terms of Use>>https://ebrains.eu/terms#general-terms-of-use]], and the [[EBRAINS Data Use Agreement>>https://ebrains.eu/terms#data-use-agreement]]. The account holder also have to accept that information about their request and access to specific data under HDG is being tracked and stored. **Data owners** must be aware that sharing under the HDG affects the legal responsibilities for the data. They must agree to joint control of the data (see the [[Data Provision Protocol v1>>url:https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]], section 1.4 - 1.5) and the Data Protection Officers of the responsible institutions must have accepted that the data can be shared under HDG.
266 266  
267 -**Jan Gündling**
325 +The HDG is an extension of the existing services and does not replace the future EBRAINS Service for sensitive data (planned for 2024) which is outside the domain of the current EBRAINS Data and Knowledge services.
268 268  
269 -(% class="small" %)Curation Scientist,
270 -Phd Student
271 -Sensors and Cognitive Psychology (M. Sc.)(%%)
272 -(% class="small" style="color:#4a5568" %)**Human-Computer Interaction**
273 -)))|(% style="width:303px" %)(((
274 -
327 +----
275 275  
329 +== **The openMINDS metadata framework** ==
276 276  
331 +(% class="box floatinginfobox" %)
332 +(((
333 +[[[[image:https://github.com/HumanBrainProject/openMINDS/raw/main/img/light_openMINDS-logo.png||alt="openMINDS logo" height="87" width="164"]]>>https://github.com/HumanBrainProject/openMINDS]]
334 +)))
277 277  
336 +openMINDS (open Metadata Initiative for Neuroscience Data Structures) is a community-driven, open-source metadata framework for graph database systems, such as the EBRAINS Knowledge Graph. It is composed of linked metadata models, libraries of serviceable metadata instances, and supportive tooling ([[openMINDS Python>>url:https://pypi.org/project/openMINDS/]], openMINDS Matlab). For exploring the openMINDS schemas, go to the [[HTML documentation>>url:https://humanbrainproject.github.io/openMINDS/]]. For a full overview of the framework, go to [[the openMINDS collab>>url:https://wiki.ebrains.eu/bin/view/Collabs/openminds/]] or the [[GitHub repository>>https://github.com/HumanBrainProject/openMINDS]].
278 278  
338 +For feedback, requests, or contributions, please get in touch with the openMINDS development team via
279 279  
340 +* the support-email: [[openminds@ebrains.eu>>path:mailto:openminds@ebrains.eu]]
341 +* the [[GitHub issue tracker>>url:https://github.com/HumanBrainProject/openMINDS/issues]]
342 +* the INCF NeuroStars [[openMINDS Community Forum>>url:https://neurostars.org/t/openminds-community-forum-virtual/20156]]
280 280  
344 +----
281 281  
346 +== **Add practical value to your shared data, model or software** ==
282 282  
283 283  
349 +=== **Showcase shared data, models or software in other services** ===
284 284  
351 +Below is a list of additional services that data, models or software shared via EBRAINS can benefit from. EBRAINS is continuously looking to increase the number of interoperable services.
285 285  
286 -**Lyuba Zehl**
287 287  
288 -(% class="small" %)Knowledge Systems Engineer
289 -Dr. rer. nat. (Systems Neuroscience)(%%)
290 -(% class="small" style="color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
291 -)))|(% style="width:303px" %) |
354 +|(% colspan="2" %)**Viewer for 2D images**
355 +|[[image:MIO_screenshot.PNG]]|Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].
356 +|(% colspan="2" %)**Viewer for sequential atlas-registered 2D images with annotation options**
357 +|[[image:LZ_screenshot.PNG]]|Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].
358 +|(% colspan="2" %)**Interactive 3D atlas viewer with options for data visualization**
359 +|[[image:3Datlas_screenshot.PNG]]|Upload your data to the //Siibra-explorer//: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to register your data to atlases, read about the [[Atlas services on ebrains.eu>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]].
360 +|(% colspan="2" %)**Use your research product in an interactive publication**
361 +|[[image:LivePaper_screenshot.PNG]]|Add your data, models or software to a// Live paper. //Read more about [[Live papers on ebrains.eu>>https://www.ebrains.eu/data/live-papers/live-papers]].
292 292  
293 293  ----
294 294  
295 -== **Add practical value to your shared data, model or software** ==
296 -
297 -
298 298  ==== **Add a tutorial or learning resource ** ====
299 299  
300 300  (% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %)
301 -(% style="color:#000000" %)//More information will follow//
368 +(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
302 302  
303 303  
304 304  ==== **Create a workflow** ====
305 305  
306 306  (% class="wikigeneratedid" id="H-Workflows5Binformation5D" %)
307 -(% style="color:#000000" %)//More information will follow//
374 +(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
308 308  
309 309  ----
310 310  
311 -=== **Showcase shared data, models or software in other services** ===
378 +== **General benefits of sharing data ** ==
312 312  
313 -Below is a list of additional services that data, models or software shared via EBRAINS can benefit from. EBRAINS is continuously looking to increase the number of interoperable services.
380 +By sharing your data via EBRAINS, you gain access to the following benefits:
314 314  
315 -**Viewer for 2D images **
382 +[[image:image-20230324170841-3.png]]
316 316  
317 -* Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].
318 318  
319 -**Viewer for sequential atlas-registered 2D images with annotation options**
320 320  
321 -* Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].
386 +We support you to better follow the [[FAIR^^ ^^guiding principles>>https://www.nature.com/articles/sdata201618]] for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.  Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product.
322 322  
323 -**Use your research product in an interactive publication **
388 +----
324 324  
325 -* Add your data, models or software to a// Live paper. //Read more about [[Live papers on ebrains.eu>>https://www.ebrains.eu/data/live-papers/live-papers]].
390 +== **Frequently asked questions ** ==
326 326  
327 -**Interactive 3D atlas viewer with options for data visualization**
392 +>Is the curation process time consuming and difficult?
328 328  
329 -* Upload your data to //the Siibra//-explorer: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to register your data to atlases, read about the [[Atlas services on ebrains.eu>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]].
394 +No, if communication is on a regular basis, we are able to finish curation within two weeks. Publishing your data naturally takes some effort but we will support you as much as possible.
330 330  
331 -----
396 +>Is sharing my data also beneficial for me or only for others?
332 332  
333 -=== **The benefits of sharing data ** ===
398 +When you publish your data via EBRAINS, we provide comprehensive data management support and safe long term storage - all free of charge. Additionally, your data can be cited, just like a scientific journal article. Sharing your data may even lead to new funding opportunities. Many funders specifically support projects that are part of the “Open Science” initiative.
334 334  
335 -By sharing your data via EBRAINS, you gain access to the following benefits:
400 +>Can my data be too insignificant to share?
336 336  
337 -[[image:image-20230324170841-3.png]]
402 +No, there is no such thing as insignificant data. Data that is considered insignificant for a given topic, may have great significance for another. By making “insignificant” data publicly available, other researchers may find something interesting that was off-topic for your own purposes.
338 338  
404 +>Can my data be easily misused if I share it?
339 339  
406 +No, your data will be covered by a Creative Commons license of your choice. There are a variety of licenses available, enabling you to prevent use for specific purposes, e.g. commercial use.
340 340  
341 -We support you to better follow the FAIR^^ ^^guiding principles for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.  Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product.
408 +>Can I share my data before my paper is published?
342 342  
410 +Yes, if you do not want to share your data before publishing the results in an article, you can publish your dataset with an embargo status. This will make it possible to find information about the data without making the data itself available, and give you a citeable DOI.
411 +
412 +>Can I lose my competitive edge if I share my data before I publish the associated paper?
413 +
414 +No, publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data.
415 +
416 +
343 343  ----
344 344  
345 -=== **Frequently asked questions ** ===
419 +== (% style="color:#1a202c; font-family:inherit; font-size:29px" %)**The curation team: meet the curators**(%%) ==
346 346  
347 -(((
348 -==== ====
421 +The EBRAINS curators help researchers publish their research using the EBRAINS Research Infrastructure. A curator’s job is similar to the job of an editor of a scientific journal, checking the data is organized, understandable, accessible and sufficiently described.
349 349  
350 -(((
351 ->The curation process is time consuming and difficult
352 -)))
353 -)))
423 +The curators in EBRAINS are located in Oslo, Jülich, Trier and Paris. 
424 +
354 354  
355 -(% class="wikigeneratedid" id="HHowcanIshareA0models3F" %)
356 -Publishing your data naturally takes some time and effort but we will support you as much as possible. If communication is on a regular basis, we are able to finish basic curation - from the initial contact to dataset release - within two weeks.
426 +**Located in Norway**
357 357  
358 ->Sharing my data is not beneficial for me - only for others
428 +|(% style="width:303px" %)(((
429 +[[image:My project2.jpg||height="209" width="167"]]
359 359  
431 +**Archana Golla**
360 360  
361 -When you publish your data via EBRAINS, we provide comprehensive data management support and safe long term storage - all free of charge. Additionally, your data can be cited, just like a scientific journal article. Sharing your data may even lead to new funding opportunities. Many funders specifically support projects that are part of the “Open Science” initiative.
433 +(% class="small" %)Curation Scientist
434 +Neuroscience (PhD)(%%)
435 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Behavioral neuroscience and microscopy**
436 +)))|(% style="width:303px" %)(((
437 +[[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]]
362 362  
363 ->My data is too insignificant to share
439 +**Camilla H. Blixhavn**
364 364  
441 +(% class="small" %)Curation Scientist,
442 +Phd Student
443 +Neuroscience (M. Sc.)(%%)
444 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and data integration**
445 +)))|(% style="width:303px" %)(((
446 +[[image:My project (1).jpg||height="209" width="167"]]
365 365  
366 -There is no such thing as insignificant data. Data that is considered insignificant for a given topic, may have great significance for another. By making “insignificant” data publicly available, other researchers may find something interesting that was off-topic for your own purposes.
448 +**Ingrid Reiten**
367 367  
368 ->My data can easily be misused if I share it with the world
450 +(% class="small" %)Curation Scientist,
451 +Phd Student
452 +Neuroscience (M. Sc.)(%%)
453 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and structural connectivity**
454 +)))|(% style="width:303px" %)(((
455 +[[image:My project1.jpg||height="209" width="167"]]
369 369  
457 +**Sophia Pieschnik**
370 370  
371 -Your data will be covered by a Creative Commons license of your choice. There are a variety of licenses available, enabling you to prevent use for specific purposes, e.g. commercial use.
459 +(% class="small" %)Curation Scientist
460 +Neurocognitive Psychology (M. Sc.)(%%)
461 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroimaging **
462 +)))
372 372  
373 ->I don't think I'm allowed to share my data
464 +|(% style="width:303px" %)(((
465 +[[image:My project.jpg||height="209" width="167"]]
374 374  
467 +**Heidi Kleven**
375 375  
376 -Many institutions are still very careful about what can be shared and how, but the situation is constantly evolving. As a researcher providing data, you will be asked to fill out an ethics compliance survey which survey to ensure that data published through the EBRAINS platform has been collected according to EU regulations. We are working on solutions for sharing anonymised human data that complies with GDPR standards to protect the identity of research subjects.
469 +(% class="small" %)Curation Scientist,
470 +Phd Student
471 +Neuroscience (M. Sc.)(%%)
472 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and brain atlases**
473 +)))| | |
377 377  
378 ->I can't share my data before my paper is published
475 +
476 +\\**Located in Germany**
379 379  
478 +|(% style="width:303px" %)(((
479 +[[image:My project (2).jpg||height="209" width="167"]]
380 380  
381 -If you do not want to share your data before publishing the results in an article, you can publish your dataset with an embargo status. This will make it possible to find information about the data without making the data itself available, and give you a citeable DOI.
481 +**Jan Gündling**
382 382  
383 ->If I share my data before I publish the associated paper, I will lose my competitive edge
483 +(% class="small" %)Curation Scientist,
484 +Phd Student
485 +Sensors and Cognitive Psychology (M. Sc.)(%%)
486 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Human-Computer Interaction**
487 +)))|(% style="width:303px" %)(((
488 +[[image:Lyuba.jpg||height="209" width="167"]]
384 384  
490 +**Lyuba Zehl**
385 385  
386 -Publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data.
492 +(% class="small" %)Knowledge Systems Engineer
493 +Dr. rer. nat. (Systems Neuroscience)(%%)
494 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
495 +)))|(% style="width:303px" %) |(% style="width:303px" %)
387 387  
497 +----
388 388  
499 +
500 +
389 389  ----
390 390  
391 391  == Contact ==
... ... @@ -392,9 +392,16 @@
392 392  
393 393  [[curation-support@ebrains.eu>>mailto:curation-support@ebrains.eu]]
394 394  
507 +----
395 395  
509 +== Affiliated laboratories ==
510 +
511 +//Institute of Basic Medical Sciences,** **University of Oslo, Norway (PI: Jan G. Bjaalie, Trygve B. Leergaard)//
512 +
513 +//Institute of Neuroscience and Medicine (INM-1), Research Centre Jülich, Germany (PI: Timo Dicksheid)//
514 +
515 +----
516 +
517 +== References ==
518 +
396 396  {{putFootnotes/}}
397 -~)~)~)~)~)~)
398 -~)~)~)
399 -~)~)~)~)~)~)~)~)~)
400 -~)~)~)~)~)~)
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