Changes for page data-curation-copy

Last modified by eapapp on 2023/07/04 16:46
From version 158.1
edited by ingrreit
on 2023/06/05 10:49
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To version 168.1
edited by eapapp
on 2023/06/06 13:58
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1 +XWiki.eapapp
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1 1  == Publishing neuroscience data, models and software via EBRAINS ==
2 2  
3 3  
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8 8  {{toc depth="3" start="2"/}}
9 9  {{/box}}
10 10  
11 -
12 12  == **Information to get started** ==
13 13  
14 14  **[[REQUEST CURATION>>https://nettskjema.no/a/277393#/]] to share data, simulations, computational models, and software, - or to add a new version of an existing one. **
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30 30  
31 31  (% class="box successmessage" %)
32 32  (((
33 -**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases
51 +**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases. Reach us at [[curation-support@ebrains.eu>>mailto:curation-support@ebrains.eu]]
34 34  )))
35 35  
36 36  ----
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55 55  
56 56  [[image:image-20230326054341-1.png]]
57 57  
58 -==== [[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]//All you need to know to share data on EBRAINS.// ====
76 +(% class="box floatinginfobox" id="share-data-infographic" %)
77 +(((
78 +(% style="text-align:center" %)
79 +//Download our infographic//
80 +//with all you need to know//
81 +//to share data on EBRAINS: //
82 +// //
83 +[[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
59 59  
85 +
86 +)))
60 60  
88 +
61 61  ==== **1. Provide some general information about your dataset** ====
62 62  
63 63  
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92 92  If a data collection is already uploaded elsewhere, we may link to the already existing repository.
93 93  
94 94  
95 -(% style="color:#1a202c; font-family:inherit; font-size:23px" %)**3. Submit metadata**
123 +==== **3. Submit metadata** ====
96 96  
97 97  
98 98  [[image:https://lh5.googleusercontent.com/WS4T2LhF9znWWChn3Z550agLrrb-KTWdYVsJSv0lh4cGjKbjuN1WV68WER9xkYqi1UqN7KYZz7bImYz3_TpOuTuvma7T192QUiUZoyJVPk1fj5NSDSQh_kpIeBufAOdDtsDRpPKK_P5EDPqRCTAaOTNyCw=s2048||height="91px;" width="91px;"]]**Submit metadata using the **[[EBRAINS Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]** (opt. 1), or through direct interaction with the Knowledge Graph (opt. 2) **
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120 120  
121 121  Journal publications sufficiently describing the shared data, such as made available through [[Nature Scientific Data>>http://www.nature.com/sdata/about]], [[Elsevier Data in Brief>>http://www.journals.elsevier.com/data-in-brief/]], [[BMC Data note>>https://bmcresnotes.biomedcentral.com/submission-guidelines/preparing-your-manuscript/data-note]] and more, can replace the EBRAINS Data Descriptor.
122 122  
123 -==== [[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]//The EBRAINS Data descriptor at-a-glance// ====
151 +(% class="box floatinginfobox" id="data-descriptor-infographic" %)
152 +(((
153 +(% style="text-align:center" %)
154 +//Download our infographic: //
155 +//The EBRAINS Data//
156 +//Descriptor at a glance//
157 +// //
158 +[[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
159 +
160 +)))
124 124  
125 -
126 126  ==== **5. Preview and publish ** ====
127 127  
128 128  
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136 136  (% class="box floatinginfobox" %)
137 137  (((
138 138  **Human subject data that can be shared on EBRAINS:**
175 +// //
176 +// - Post-mortem data//
177 +// - Aggregated data//
178 +// - Strongly pseudonymized or de-identified subject data//
179 +// with a legal basis for sharing (e.g. Informed Consent)//
180 +// //
139 139  
140 -- Post-mortem data
141 -- Aggregated data
142 -- Strongly pseudonymized or de-identified subject data with a legal basis for sharing (e.g. Informed Consent)
143 -
144 -(% class="small" %)//If you have human data that does not classify as any of the above, please get in touch and we will clarify the available options. //
182 +(% class="small" %)
183 +//If you have human data that does not qualify as any of the above,//
184 +//please [[get in touch>>https://www.ebrains.eu/contact/]] and we will clarify the available options.//
145 145  )))
146 146  
147 147  Human subject data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
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169 169  
170 170  === Step by Step - Software ===
171 171  
172 -[[[[image:swc-flow-no-header.png||alt="swc-flow.png"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
212 +[[[[image:Screenshot 2023-06-06 1122082.png||alt="swc-flow.png" height="136" width="637"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
173 173  
174 -~1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions you will find the links to your software and software version entries in the Knowledge Graph.
214 +~1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions, you will find the links to your software and software version entries in the Knowledge Graph.
175 175  
176 176  2. Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary.
177 177  
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181 181  
182 182  For more information, visit our [[Guide to Software Curation in the EBRAINS Knowledge Graph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] or see our infographic below.
183 183  
184 -[[[[image:Thumb.png||alt="EBRAINS-Share-Software.pdf" height="155" style="float:left" width="106"]]>>attach:EBRAINS-Share-Software.pdf]]
224 +(% style="text-align: right;" %)
225 +==== //Software curation at a glance          //[[[[image:Thumb2.png||alt="EBRAINS-Share-Software.pdf" height="287" width="197"]]>>attach:EBRAINS-Share-Software-4.pdf]] ====
185 185  
186 -
187 -
188 -==== //Software curation at a glance// ====
189 -
190 -
191 -
192 -
193 193  ----
194 194  
195 195  == **The openMINDS metadata framework** ==
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220 220  
221 221  (% class="small" %)Curation Scientist
222 222  Neuroscience (PhD)(%%)
223 -(% class="small" style="color:#4a5568" %)**Behavioral neuroscience and microscopy**
257 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Behavioral neuroscience and microscopy**
224 224  )))|(% style="width:303px" %)(((
225 225  [[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]]
226 226  
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229 229  (% class="small" %)Curation Scientist,
230 230  Phd Student
231 231  Neuroscience (M. Sc.)(%%)
232 -(% class="small" style="color:#4a5568" %)**Neuroanatomy and data integration**
266 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and data integration**
233 233  )))|(% style="width:303px" %)(((
234 234  [[image:My project (1).jpg||height="209" width="167"]]
235 235  
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238 238  (% class="small" %)Curation Scientist,
239 239  Phd Student
240 240  Neuroscience (M. Sc.)(%%)
241 -(% class="small" style="color:#4a5568" %)**Neuroanatomy and structural connectivity**
275 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and structural connectivity**
242 242  )))|(% style="width:303px" %)(((
243 243  [[image:My project1.jpg||height="209" width="167"]]
244 244  
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246 246  
247 247  (% class="small" %)Curation Scientist
248 248  Neurocognitive Psychology (M. Sc.)(%%)
249 -(% class="small" style="color:#4a5568" %)**Neuroimaging **
283 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroimaging **
250 250  )))
251 251  
252 252  |(% style="width:303px" %)(((
... ... @@ -257,7 +257,7 @@
257 257  (% class="small" %)Curation Scientist,
258 258  Phd Student
259 259  Neuroscience (M. Sc.)(%%)
260 -(% class="small" style="color:#4a5568" %)**Neuroanatomy and brain atlases**
294 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and brain atlases**
261 261  )))| | |
262 262  
263 263  
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271 271  (% class="small" %)Curation Scientist,
272 272  Phd Student
273 273  Sensors and Cognitive Psychology (M. Sc.)(%%)
274 -(% class="small" style="color:#4a5568" %)**Human-Computer Interaction**
308 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Human-Computer Interaction**
275 275  )))|(% style="width:303px" %)(((
276 276  
277 277  
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289 289  
290 290  (% class="small" %)Knowledge Systems Engineer
291 291  Dr. rer. nat. (Systems Neuroscience)(%%)
292 -(% class="small" style="color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
326 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
293 293  )))|(% style="width:303px" %) |
294 294  
295 295  ----
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297 297  == **Add practical value to your shared data, model or software** ==
298 298  
299 299  
300 -==== **Add a tutorial or learning resource ** ====
301 -
302 -(% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %)
303 -(% style="color:#000000" %)//More information will follow//
304 -
305 -
306 -==== **Create a workflow** ====
307 -
308 -(% class="wikigeneratedid" id="H-Workflows5Binformation5D" %)
309 -(% style="color:#000000" %)//More information will follow//
310 -
311 311  ----
312 312  
313 313  === **Showcase shared data, models or software in other services** ===
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332 332  
333 333  ----
334 334  
358 +==== **Add a tutorial or learning resource ** ====
359 +
360 +(% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %)
361 +(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
362 +
363 +
364 +==== **Create a workflow** ====
365 +
366 +(% class="wikigeneratedid" id="H-Workflows5Binformation5D" %)
367 +(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
368 +
369 +----
370 +
335 335  === **The benefits of sharing data ** ===
336 336  
337 337  By sharing your data via EBRAINS, you gain access to the following benefits:
... ... @@ -340,7 +340,7 @@
340 340  
341 341  
342 342  
343 -We support you to better follow the FAIR^^ ^^guiding principles for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.  Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product.
379 +We support you to better follow the [[FAIR^^ ^^guiding principles>>https://www.nature.com/articles/sdata201618]] for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.  Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product.
344 344  
345 345  ----
346 346  
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347 347  === **Frequently asked questions ** ===
348 348  
349 349  (((
350 -==== ====
386 +==== ====
351 351  
352 352  (((
353 353  >The curation process is time consuming and difficult
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