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... ... @@ -1,6 +1,25 @@ 1 -== Publishing neuroscience data, models and software via EBRAINS == 1 +{{html clean="false"}} 2 +<div style="float:right;margin-left:1em;margin-bottom:1em"> 3 + <form title="Search in this collab" target="_blank" action="https://wiki.ebrains.eu/bin/view/Main/Search"> 4 + <input type="hidden" name="sort" value="score"> 5 + <input type="hidden" name="sortOrder" value="desc"> 6 + <input type="hidden" name="highlight" value="true"> 7 + <input type="hidden" name="facet" value="true"> 8 + <input type="hidden" name="r" value="1"> 9 + <input type="hidden" name="f_locale" value="en"> 10 + <input type="hidden" name="f_space_facet" value="1/Collabs.test-ir2."> 11 + <input type="hidden" name="l_space_facet" value="100"> 12 + <input type="hidden" name="f_type" value="DOCUMENT"> 13 + <input type="text" name="text" placeholder="Search here..." size="25" id="searchbox" /> 14 + <input type="submit" value="🔎︎" id="submit"/> 15 + </form> 16 +</div> 17 +{{/html}} 2 2 3 3 20 +(% class="wikigeneratedid" id="HPublishingneurosciencedata2CmodelsandsoftwareviaEBRAINS" %) 21 +(% style="font-size:2em" %)**Publishing neuroscience data, models and software via EBRAINS** 22 + 4 4 (% class="wikigeneratedid" %) 5 5 The aim of this collab is to provide you with detailed information about publishing data, simulations, computational models, and software via EBRAINS. If you want a quick overview of the sharing process, see [[https:~~/~~/ebrains.eu/service/share-data>>https://ebrains.eu/service/share-data]]. 6 6 ... ... @@ -8,7 +8,6 @@ 8 8 {{toc depth="3" start="2"/}} 9 9 {{/box}} 10 10 11 - 12 12 == **Information to get started** == 13 13 14 14 **[[REQUEST CURATION>>https://nettskjema.no/a/277393#/]] to share data, simulations, computational models, and software, - or to add a new version of an existing one. ** ... ... @@ -16,8 +16,10 @@ 16 16 Have you already published your data somewhere else? You can increase the exposure and impact of your shared dataset by also listing it on EBRAINS. 17 17 18 18 19 -(% style="text-align: center;" %) 20 -Search existing data, models and software in [[the EBRAINS Knowledge Graph Search>>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]] 37 +(% class="box" style="text-align: center; font-size: 1.2em" %) 38 +((( 39 +Search existing data, models and software in the [[EBRAINS Knowledge Graph>>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]] 40 +))) 21 21 22 22 23 23 EBRAINS accepts data from all modalities and from all species, as well as models, software, web services and metadata models (collectively referred to as research products) for sharing. You'll find detailed information about how to share each research product below. ... ... @@ -55,18 +55,27 @@ 55 55 56 56 [[image:image-20230326054341-1.png]] 57 57 58 -==== [[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]//All you need to know to share data on EBRAINS.// ==== 78 +(% class="box floatinginfobox" id="share-data-infographic" %) 79 +((( 80 +(% style="text-align:center" %) 81 +//Download our infographic// 82 +//with all you need to know// 83 +//to share data on EBRAINS: // 84 +// // 85 +[[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]] 86 +))) 59 59 60 60 61 61 ==== **1. Provide some general information about your dataset** ==== 62 62 63 63 64 -[[image:https://lh3.googleusercontent.com/zh7TvO6w04YGW9jIhfhmdT6CexdGs-AWOLfJXKRq7-tdHOu6ar1rOQx8o4rZevrjXqgPZ7-Ejv4b6X9XpgXuHpdUXi-mBTHIUnv5Vz-DktHt0sP-PZ3gE8XgZid3TV3swV1uTCBhHx11ge0pjP7RVxswGQ=s2048||height="85px;" width="91px;"]]** Fill in the [[Curation request form>>https://nettskjema.no/a/277393#/]]. ** 65 65 93 +(% style="margin-right:10px" %)[[image:https://lh3.googleusercontent.com/zh7TvO6w04YGW9jIhfhmdT6CexdGs-AWOLfJXKRq7-tdHOu6ar1rOQx8o4rZevrjXqgPZ7-Ejv4b6X9XpgXuHpdUXi-mBTHIUnv5Vz-DktHt0sP-PZ3gE8XgZid3TV3swV1uTCBhHx11ge0pjP7RVxswGQ=s2048||height="85px;" width="91px;"]](%%)** Fill in the [[Curation request form>>https://nettskjema.no/a/277393#/]]. ** 94 + 66 66 This form collects preliminary information about your data, allowing us to assess whether the dataset fits within the scope of EBRAINS. The submission generates a curation ID allowing us to track the case. 67 67 68 68 69 -[[image:https://lh6.googleusercontent.com/yw442oS6BwZOlY-_0BoVxyCW3DrdcJ5ogCes92iOD16_rgNEVk56aNMDaVWXFfBLYv24bHzmGgBF9wg0szjH70xzuRTqxoQAeuy3knNO7axCHoyZDXwtyTcMgFnYwbOYxOT29LK-zchrUKLW6Mle93kOkQ=s2048||height="94px;" width="94px;"]]**Fill in the [[Ethics and Regulatory compliance form>>https://nettskjema.no/a/224765]]**. 98 +(% style="margin-right:10px" %)[[image:https://lh6.googleusercontent.com/yw442oS6BwZOlY-_0BoVxyCW3DrdcJ5ogCes92iOD16_rgNEVk56aNMDaVWXFfBLYv24bHzmGgBF9wg0szjH70xzuRTqxoQAeuy3knNO7axCHoyZDXwtyTcMgFnYwbOYxOT29LK-zchrUKLW6Mle93kOkQ=s2048||height="94px;" width="94px;"]](%%)**Fill in the [[Ethics and Regulatory compliance form>>https://nettskjema.no/a/224765]]**. 70 70 71 71 This form collects the necessary information needed for us to evaluate whether we can ethically and legally share the data via EBRAINS. 72 72 ... ... @@ -75,31 +75,41 @@ 75 75 76 76 ==== **2. Upload data ** ==== 77 77 107 +(% class="box floatinginfobox" id="share-data-infographic" %) 108 +((( 109 +(% style="text-align:center" %) 110 +//Download our infographic// 111 +//with guidelines 112 +on data organization: // 78 78 79 -[[image:https://lh5.googleusercontent.com/sieKO-kW8O18iPaUyonwyo4UfHBmtc2E9BDnjbx52j6J_uGmm-OzGAo7sloMk3sYwKa6QW3hYQsOA9N4H7uGQpca088Wrk0Nurpt_J3B0-NSbcaPNdZIh21otQcG6jnAxLGiKoEvkTyaDGTMk3fu7me8mQ=s2048||height="94px;" width="94px;"]]**Ensure data is structured consistently prior to upload. ** 114 +(% style="text-align:center" %) 115 +[[[[image:image-20230621121014-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/lib/f5cf4964-f095-49bd-8c34-e4ffda05a497/file/ebrains-infographic-data-organisation.pdf/]] 116 +))) 80 80 81 - Welook fororganizeddata, notrganized accordingto our standard.Thiss tosupportthebroadest degreeofsharingpossible. Wedohowever require that the data isorganizedin aconsistentandprecise manner. Please seeour////[[collectionof guidelineson data organization>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] forfurther guidance.118 +(% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/sieKO-kW8O18iPaUyonwyo4UfHBmtc2E9BDnjbx52j6J_uGmm-OzGAo7sloMk3sYwKa6QW3hYQsOA9N4H7uGQpca088Wrk0Nurpt_J3B0-NSbcaPNdZIh21otQcG6jnAxLGiKoEvkTyaDGTMk3fu7me8mQ=s2048||height="94px;" width="94px;"]](%%)**Ensure data is structured consistently prior to upload. ** 82 82 83 - [[image:https://lh5.googleusercontent.com/EWtYwfVlbeC-jqPasgmzidqc50GrkKIEgwXeUeql8aaMHIukmFdWEy0nufVWWATbxDDK3XwwZEDmASrbpCsBk1u0HpAd8x4ZgAMsMPRcWyrb9etlV6FgKE_QN2e6SqKxHE0rzkR8uI1rRW_5z21TFGYVnw=s2048||height="91px;"width="91px;"]]**UploaddatatoEBRAINS Storage,eitherusingag-and-dropsolution(opt.1)orctivepythonscript(opt.2).**120 +We look for organized data, not organized according to our standard. This is to support the broadest degree of sharing possible. We do however require that the data is organized in a consistent and precise manner. Please see our// //[[guidelines on data organization>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] for further guidance. 84 84 85 - //Opt.1. //Forsmallerdatasets witha reasonableamountfiles,werecommendng the Collab-Bucketsolution(drag-and-drop).A Collab Bucketmustfirstbeassignedtoadataset, which happenswhena datasets is acceptedforsharing.122 +(% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/EWtYwfVlbeC-jqPasgmzidqc50GrkKIEgwXeUeql8aaMHIukmFdWEy0nufVWWATbxDDK3XwwZEDmASrbpCsBk1u0HpAd8x4ZgAMsMPRcWyrb9etlV6FgKE_QN2e6SqKxHE0rzkR8uI1rRW_5z21TFGYVnw=s2048||height="91px;" width="91px;"]](%%)**Upload data to EBRAINS Storage, either using a drag-and-drop solution (opt. 1) or an interactive python script (opt. 2).** 86 86 87 - //Opt.2.//Forlarger datasetsor datasetswith alarge amount of files, we recommend usinga programmaticapproach. The[[pythonscript>>https://github.com/eapapp/ebrains-data-storage/tree/main/data-proxy]] isinteractive anddoesnotrequireanyadditionalprogramming.124 +**Opt. 1. **For smaller datasets with a reasonable amount of files, we recommend using the Collab-Bucket solution (drag-and-drop). A Collab Bucket must first be assigned to a dataset, which happens when a datasets is accepted for sharing. 88 88 126 +**Opt. 2. **For larger datasets or datasets with a large amount of files, we recommend using a programmatic approach. The [[python script>>https://github.com/eapapp/ebrains-data-storage/tree/main/data-proxy]] is interactive and does not require any additional programming. 89 89 128 + 90 90 EBRAINS offers secure, long-term storage at [[CSCS Swiss National Supercomputing Centre>>url:https://www.cscs.ch/]], with currently no upper limit of storage capacity. 91 91 92 92 If a data collection is already uploaded elsewhere, we may link to the already existing repository. 93 93 94 94 95 - (% style="color:#1a202c;font-family:inherit; font-size:23px" %)**3. Submit metadata**134 +==== **3. Submit metadata** ==== 96 96 97 97 98 -[[image:https://lh5.googleusercontent.com/WS4T2LhF9znWWChn3Z550agLrrb-KTWdYVsJSv0lh4cGjKbjuN1WV68WER9xkYqi1UqN7KYZz7bImYz3_TpOuTuvma7T192QUiUZoyJVPk1fj5NSDSQh_kpIeBufAOdDtsDRpPKK_P5EDPqRCTAaOTNyCw=s2048||height="91px;" width="91px;"]]**Submit metadata using the **[[EBRAINS Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]** (opt. 1), or throughdirect interactionwiththe Knowledge Graph (opt. 2) **137 +(% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/WS4T2LhF9znWWChn3Z550agLrrb-KTWdYVsJSv0lh4cGjKbjuN1WV68WER9xkYqi1UqN7KYZz7bImYz3_TpOuTuvma7T192QUiUZoyJVPk1fj5NSDSQh_kpIeBufAOdDtsDRpPKK_P5EDPqRCTAaOTNyCw=s2048||height="91px;" width="91px;"]](%%)**Submit metadata using the **[[EBRAINS Metadata Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]** (opt. 1), or directly via the Knowledge Graph (opt. 2) ** 99 99 100 - //Opt. 1.//Manually submit the minimal required metadata via the [[EBRAINS Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. The minimal required metadata covers extended bibliographic information necessary to publish your dataset on EBRAINS. The submitted information, including uploaded files, will be sent to the Curation team automatically139 +**Opt. 1.** Manually submit the minimal required metadata via the [[EBRAINS Metadata Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. The minimal required metadata covers extended bibliographic information necessary to publish your dataset on EBRAINS. The submitted information, including uploaded files, will be sent to the Curation team automatically 101 101 102 - //Opt. 2.//To go beyond the minimal required metadata, you can directly interact with the Knowledge Graph (KG) in your private space. Within the private space, you can upload metadata and interact with them, moreover you can connect your metadata to existing publicly accessible entries. Access to your private space is granted upon the initiation of the curation process. You can access your private space via:141 +**Opt. 2.** To go beyond the minimal required metadata, you can directly interact with the Knowledge Graph (KG) in your private space. Within the private space, you can upload metadata and interact with them, moreover you can connect your metadata to existing publicly accessible entries. Access to your private space is granted upon the initiation of the curation process. You can access your private space via: 103 103 104 104 * Knowledge Graph Editor: This User Interface allows you to manually enter metadata into your KG space and validate metadata that are programmatically uploaded. The Editor contains a basic set of openMINDS metadata templates, but can be extended to the full openMINDS metadata model on request. Access is granted once the request is accepted. 105 105 * [[Fairgraph>>https://fairgraph.readthedocs.io/en/stable/]]: This is the recommended software tool for programmatic interaction with the KG. It allows you to programmatically upload openMINDS compliant metadata into your KG space and interact with existing metadata. ... ... @@ -108,10 +108,12 @@ 108 108 Datasets published through the EBRAINS Knowledge Graph have to be registered using **openMINDS compliant metadata** delivered as JSON-LD files. See this summary table for an overview of [[the minimally required openMINDS properties for publishing>>https://drive.ebrains.eu/lib/47995dbc-f576-4008-a76c-eefbfd818529/file/ebrains-minimum-required-metadata.xlsx]] on EBRAINS. 109 109 110 110 111 -==== **4. Write a Data Descriptor 150 +==== **4. Write a Data Descriptor** ==== 112 112 113 -[[image:https://lh4.googleusercontent.com/lMYEKOXzejbBydOdotWWteXQo7j363xRyntBGjcPZVEdtIU1CJYX7q1STpdr2JPZK4hpWWXk20UlkUOqDGL5kX6vnQVBSdrfUo6EGfXOwpuGq1Uygv0tTZJ0lRO6voJvg56QC2mufvjAcRXGfAKFOjtc6w=s2048||height="94px;" width="94px;"]]**Write a data descriptor by filling in **[[this template>>https://drive.ebrains.eu/f/a2e07c95b1a54090bbbc/?dl=1]]** . ** 114 114 153 + 154 +(% style="margin-right:10px" %)[[image:https://lh4.googleusercontent.com/lMYEKOXzejbBydOdotWWteXQo7j363xRyntBGjcPZVEdtIU1CJYX7q1STpdr2JPZK4hpWWXk20UlkUOqDGL5kX6vnQVBSdrfUo6EGfXOwpuGq1Uygv0tTZJ0lRO6voJvg56QC2mufvjAcRXGfAKFOjtc6w=s2048||height="94px;" width="94px;"]](%%)**Write a data descriptor by filling in **[[this template>>https://drive.ebrains.eu/f/a2e07c95b1a54090bbbc/?dl=1]]**.** 155 + 115 115 The Data Descriptor is a document helping others interpret and reuse (and prevent misuse) of your data, and is critical to achieve a basic level of FAIR. The document will be uploaded in the repository of the data, shared as a PDF. 116 116 117 117 See our infographic about the data descriptor for inspiration or guidance. ... ... @@ -120,274 +120,343 @@ 120 120 121 121 Journal publications sufficiently describing the shared data, such as made available through [[Nature Scientific Data>>http://www.nature.com/sdata/about]], [[Elsevier Data in Brief>>http://www.journals.elsevier.com/data-in-brief/]], [[BMC Data note>>https://bmcresnotes.biomedcentral.com/submission-guidelines/preparing-your-manuscript/data-note]] and more, can replace the EBRAINS Data Descriptor. 122 122 123 -==== [[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]//The EBRAINS Data descriptor at-a-glance// ==== 124 124 165 +(% class="box floatinginfobox" id="data-descriptor-infographic" %) 166 +((( 167 +(% style="text-align:center" %) 168 +//Download our infographic 169 +about the EBRAINS Data// 170 +//Descriptor// 171 +// // 172 +[[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]] 173 +))) 125 125 126 -==== **5. Preview and publish 175 +==== **5. Preview and publish** ==== 127 127 128 128 129 -[[image:https://lh4.googleusercontent.com/XqT26Q4yWJK26cjtjhI4ToXoZZMxhT9LimG4Hk9mePxy0-KPKgpVIzcuiP5mOQowBgf2JjkrWUq2VbCmafWWZPJplEZALnFOlCZHLlQgzOx7fFwoBteyi_IlMLkPBS9vtOcdNIZ59HyLnQz4RsTQ0lUrSw=s2048||height="91px;" width="91px;"]]**Preview and approve the release of your dataset. ** Once a Curator has assembled the dataset in the EBRAINS Knowledge Graph, combining the data, metadata and data descriptor, the data provider will receive a private URL for previewing the dataset prior to release. We need an official approval from the data custodian{{footnote}}The Data Custodian is responsible for the content and quality of the Data and metadata, and is the person to be contacted by EBRAINS CS in case of any misconduct related to the Data. It is the obligation of a Data Custodian to keep EBRAINS informed about changes in the contact information of the authors of the Datasets provided by them ([[EBRAINS Data Provision Protocol - version 1.1>>https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]]).{{/footnote}} to release the dataset. Once released, a [[DataCite DOI>>https://datacite.org/]] will be generated for the dataset. If the identical data collection has received a DOI elsewhere, we recommend re-using the already issued DOI.178 +(% style="margin-right:10px" %)[[image:https://lh4.googleusercontent.com/XqT26Q4yWJK26cjtjhI4ToXoZZMxhT9LimG4Hk9mePxy0-KPKgpVIzcuiP5mOQowBgf2JjkrWUq2VbCmafWWZPJplEZALnFOlCZHLlQgzOx7fFwoBteyi_IlMLkPBS9vtOcdNIZ59HyLnQz4RsTQ0lUrSw=s2048||height="91px;" width="91px;"]](%%)**Preview and approve the release of your dataset. ** 130 130 180 +Once a Curator has assembled the dataset in the EBRAINS Knowledge Graph, combining the data, metadata and data descriptor, the data provider will receive a private URL for previewing the dataset prior to release. We need an official approval from the data custodian{{footnote}}The Data Custodian is responsible for the content and quality of the Data and metadata, and is the person to be contacted by EBRAINS CS in case of any misconduct related to the Data. It is the obligation of a Data Custodian to keep EBRAINS informed about changes in the contact information of the authors of the Datasets provided by them ([[EBRAINS Data Provision Protocol - version 1.1>>https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]]).{{/footnote}} to release the dataset. Once released, a [[DataCite DOI>>https://datacite.org/]] will be generated for the dataset. If the identical data collection has received a DOI elsewhere, we recommend re-using the already issued DOI. 131 131 132 ----- 133 133 134 -==== **Sharing human subject data ** ==== 135 135 136 -(% class="box floatinginfobox" %) 137 -((( 138 -**Human subject data that can be shared on EBRAINS:** 139 139 140 -- Post-mortem data 141 -- Aggregated data 142 -- Strongly pseudonymized or de-identified subject data with a legal basis for sharing (e.g. Informed Consent) 185 +---- 143 143 144 -(% class="small" %)//If you have human data that does not classify as any of the above, please get in touch and we will clarify the available options. // 145 -))) 187 +=== Step by Step - Models === 146 146 147 -Human subject data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]]. 148 148 149 - Post-mortemandaggregated human data can be shared openly, given directidentifiers in the metadata are removed. Stronglypseudonymized and de-identified data can be shared via the Human Data Gateway (HDG).190 +==== 1. Start early ==== 150 150 151 - The Human DataGateway (HDG) wasintroducedinFebruary2021 as a responseto theneeds of multipledata providerswhoarebringing human subject datatoEBRAINS. HDG coversthesharing of stronglypseudonymized orde-identified data, a limitedrangehuman subject data without directidentifiersandwithvery few indirect identifiers.192 +It is not necessary to wait until you are ready to publish to register your model with EBRAINS. 152 152 153 -The HDG adds an an authentication layer on top of the data. This means that **data users **must request access to the data (via their EBRAINS account) and will receive access provided they actively accept the [[EBRAINS Access Policy>>https://ebrains.eu/terms#access-policy]], the [[EBRAINS General Terms of Use>>https://ebrains.eu/terms#general-terms-of-use]], and the [[EBRAINS Data Use Agreement>>https://ebrains.eu/terms#data-use-agreement]]. The account holder also have to accept that information about their request and access to specific data under HDG is being tracked and stored. **Data owners** must be aware that sharing under the HDG affects the legal responsibilities for the data. They must agree to joint control of the data (see the [[Data Provision Protocol v1>>url:https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]], section 1.4 - 1.5) and the Data Protection Officers of the responsible institutions must have accepted that the data can be shared under HDG. 194 +By registering a model early in your project, you can take advantage of EBRAINS tools 195 +to keep track of simulations and to share them with your collaborators. 154 154 155 - TheHDGis an extension of the existing servicesand does notreplace the future EBRAINS Service forsensitivedata(plannedfor2024) which isoutside the domain of thecurrentEBRAINS Data and Knowledge services.197 +==== 2. Create/choose a Collab workspace ==== 156 156 199 +We use EBRAINS Collaboratory "collab" workspaces to help manage the model curation process. 157 157 158 - ----201 +In particular, we use collab membership (the "Team") to control who can view or edit your model metadata prior to publication. 159 159 160 -=== Step by Step - Models === 203 +It is up to you whether you create a new collab for each model, or reuse an existing collab 204 +(it is no problem to have multiple models associated with a single collab). 161 161 206 +Collabs are also useful for storing simulation results, adding documentation for your model, 207 +and/or providing tutorials in Jupyter notebooks. 162 162 163 - ~1.Request curation using the [[Curation request form>>https://nettskjema.no/a/277393#/]].You will be contactedby acurator with moreinformation.209 +==== 3. Upload code ==== 164 164 211 +We recommend storing model code and/or configuration files in an online Git repository, for example on GitHub. 212 +This repository should be public when you publish the model, but a private repository can be used for model development. 165 165 166 - //Additionalinformationwilladdedsoon.//214 +Alternatively, you can upload code to the Collab Drive or Bucket storage. 167 167 168 - ----216 +==== 4.Submit metadata ==== 169 169 170 - ===StepbyStep-Software===218 +We recommend submitting metadata using the Model Catalog app, installed in your collab. 171 171 172 - [[[[image:swc-flow-no-header.png||alt="swc-flow.png"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopenernoreferrer"target="_blank"]]220 +To install it: 173 173 174 -~1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions you will find the links to your software and software version entries in the Knowledge Graph. 222 +1. click the "+ Create" button 223 +1. in the "Create Page" form, add a title, such as "Model Catalog", and select "Community App", then click "Create" 224 +1. scroll down until you find the "Model Catalog" app, click "Select", then "Save & View" 175 175 176 -2. Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary. 226 +You will then see a table of all the models and validation tests associated with this collab. 227 +If this is your first time using the app, the table will probably be empty. 228 +To add your model, click "+", fill in the form, then click "Add model". 177 177 178 -3. After a quality check, we integrate and publish the information to the Knowledge Graph. Your software is then searchable and usable for the neuroscience community. 230 +As development of your model proceeds, you can easily register new versions of the code, 231 +and new parameterizations, by clicking "Add new version". 179 179 180 -If you want to add a new version to an already curated software, please request this via the [[curation request form>>https://nettskjema.no/a/277393]]. 233 +If you prefer not to use the app, you can instead fill in the [[Curation request form>>https://nettskjema.no/a/277393#/]]., 234 +and you will be contacted by e-mail with further instructions. 181 181 182 - Formoreinformation,visit our [[Guideto SoftwareCuration in theEBRAINS KnowledgeGraph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] orsee our infographic below.236 +==== 5. Provide a reference dataset ==== 183 183 184 -[[[[image:Thumb.png||alt="EBRAINS-Share-Software.pdf" height="155" style="float:left" width="106"]]>>attach:EBRAINS-Share-Software.pdf]] 238 +Once you're ready to publish your model entry in the EBRAINS Knowledge Graph, 239 +we encourage you to provide a dataset containing the simulation results produced by your model, 240 +following the process under "Step by step - Data" above. 185 185 242 +These reference data will be linked to the model, and will be helpful to anyone trying to 243 +reuse your model. 186 186 245 +We will soon introduce a "Reproducible" badge for all models that include a reference dataset, 246 +and whose simulation results can be reproduced by an EBRAINS curator. 187 187 188 -==== //Softwarecurationataglance//====248 +==== 6. Request publication, preview and publish ==== 189 189 250 +Until you request your model entry to be published in the EBRAINS Knowledge Graph, 251 +only members of the collab will be able to view the model entry, in the Model Catalog app 252 +or using the Model Validation Python client. 190 190 254 +After publication, the model will appear in the [[EBRAINS public search results>>https://search.kg.ebrains.eu/?category=Model||rel="noopener noreferrer" target="_blank"]], and will receive a DOI. 191 191 256 +To request publication, [[contact EBRAINS support>>https://ebrains.eu/support||rel="noopener noreferrer" target="_blank"]], providing the collab name and the model name or ID. 192 192 193 ----- 194 194 195 - ==**TheopenMINDS metadataframework**==259 +Curators will then perform a number of checks: 196 196 197 -openMINDS (open Metadata Initiative for Neuroscience Data Structures) is a community-driven, open-source metadata framework for graph database systems, such as the EBRAINS Knowledge Graph. It is composed of linked metadata models, libraries of serviceable metadata instances, and supportive tooling ([[openMINDS Python>>url:https://pypi.org/project/openMINDS/]], openMINDS Matlab). For exploring the openMINDS schemas, go to the [[HTML documentation>>url:https://humanbrainproject.github.io/openMINDS/]]. For a full overview of the framework, go to [[the openMINDS collab>>url:https://wiki.ebrains.eu/bin/view/Collabs/openminds/]] or the [[GitHub repository>>https://github.com/HumanBrainProject/openMINDS]]. 261 +1. Does the model description provide sufficient context to understand the purpose and use of the model? 262 +1. Does the code repository contain a licence file, explaining the conditions for reusing the code? 263 +1. Does the model have a clearly defined version identifier (e.g. v1.0)? For models in a Git repository, the version identifier should match the name of a tag or release. 198 198 199 - For feedback,requests, orcontributions,pleasegetintouchwiththeopenMINDSdevelopment team via265 +The curators will also take a snapshot of your model code. 200 200 201 -* the support-email: [[openminds@ebrains.eu>>path:mailto:openminds@ebrains.eu]] 202 -* the [[GitHub issue tracker>>url:https://github.com/HumanBrainProject/openMINDS/issues]] 203 -* the INCF NeuroStars [[openMINDS Community Forum>>url:https://neurostars.org/t/openminds-community-forum-virtual/20156]] 267 +* For models in public Git repositories, we archive a copy of the repository in [[Software Heritage>>https://www.softwareheritage.org/||rel="noopener noreferrer" target="_blank"]]. 268 +* For models in a collab Bucket or Drive, we make a read-only copy of the code in a public container in the EBRAINS repository. 204 204 270 +Once this is done, you will be invited to review a preview of how the model entry will appear in the KG Search, 271 +and will have the opportunity to request modifications prior to approval and publication. 272 + 205 205 ---- 206 206 207 -== **Thecurationteam:meetthe curators**==275 +=== Step by Step - Software === 208 208 209 -The EBRAINS curators help researchers publish their research using the EBRAINS Research Infrastructure. A curator’s job is similar to the job of an editor of a scientific journal, checking the data is organized, understandable, accessible and sufficiently described. 210 210 211 -The curators in EBRAINS are located in Oslo, Jülich, Trier and Paris. 212 - 278 +(% class="box floatinginfobox" id="software-curation-infographic" %) 279 +((( 280 +(% style="text-align:center" %) 281 +//Software curation at a glance// 282 +// // 283 +[[[[image:Thumb2.png||alt="EBRAINS-Share-Software.pdf" height="287" width="197"]]>>attach:EBRAINS-Share-Software-4.pdf]] 284 +))) 213 213 214 - **LocatedinNorway:**286 +(% style="margin-left:15px" %)[[[[image:Screenshot 2023-06-06 1122082.png||alt="swc-flow.png" height="136" width="637"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]] 215 215 216 -|(% style="width:303px" %)((( 217 -[[image:My project2.jpg||height="209" width="167"]] 288 +1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions, you will find the links to your software and software version entries in the Knowledge Graph. 289 +1. Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary. 290 +1. After a quality check, we integrate and publish the information to the Knowledge Graph. Your software is then searchable and usable for the neuroscience community. 218 218 219 - **ArchanaGolla**292 +If you want to add a new version to an already curated software, please request this via the [[curation request form>>https://nettskjema.no/a/277393]]. 220 220 221 -(% class="small" %)Curation Scientist 222 -Neuroscience (PhD)(%%) 223 -(% class="small" style="color:#4a5568" %)**Behavioral neuroscience and microscopy** 224 -)))|(% style="width:303px" %)((( 225 -[[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]] 294 +For more information, visit our [[Guide to Software Curation in the EBRAINS Knowledge Graph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] or see our infographic on the right. 226 226 227 -**Camilla H. Blixhavn** 228 228 229 -(% class="small" %)Curation Scientist, 230 -Phd Student 231 -Neuroscience (M. Sc.)(%%) 232 -(% class="small" style="color:#4a5568" %)**Neuroanatomy and data integration** 233 -)))|(% style="width:303px" %)((( 234 -[[image:My project (1).jpg||height="209" width="167"]] 297 +---- 235 235 236 - **IngridReiten**299 +=== Sharing human subject data === 237 237 238 -(% class="small" %)Curation Scientist, 239 -Phd Student 240 -Neuroscience (M. Sc.)(%%) 241 -(% class="small" style="color:#4a5568" %)**Neuroanatomy and structural connectivity** 242 -)))|(% style="width:303px" %)((( 243 -[[image:My project1.jpg||height="209" width="167"]] 301 +(% class="box floatinginfobox" %) 302 +((( 303 +**Human subject data that can be shared on EBRAINS:** 304 +// // 305 +// - Post-mortem data// 306 +// - Aggregated data// 307 +// - Strongly pseudonymized or de-identified subject data// 308 +// with a legal basis for sharing (e.g. Informed Consent)// 309 +// // 244 244 245 -**Sophia Pieschnik** 246 - 247 -(% class="small" %)Curation Scientist 248 -Neurocognitive Psychology (M. Sc.)(%%) 249 -(% class="small" style="color:#4a5568" %)**Neuroimaging ** 311 +(% class="small" %) 312 +//If you have human data that does not qualify as any of the above,// 313 +//please [[get in touch>>https://www.ebrains.eu/contact/]] and we will clarify the available options.// 250 250 ))) 251 251 252 -|(% style="width:303px" %)((( 253 -[[image:My project.jpg||height="209" width="167"]] 254 254 255 - **HeidiKleven**317 +Human subject data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]]. 256 256 257 -(% class="small" %)Curation Scientist, 258 -Phd Student 259 -Neuroscience (M. Sc.)(%%) 260 -(% class="small" style="color:#4a5568" %)**Neuroanatomy and brain atlases** 261 -)))| | | 319 +Post-mortem and aggregated human data can be shared openly, given direct identifiers in the metadata are removed. Strongly pseudonymized and de-identified data can be shared via the Human Data Gateway (HDG). 262 262 263 - 264 -\\**Located in Germany:** 321 +The Human Data Gateway (HDG) was introduced in February 2021 as a response to the needs of multiple data providers who are bringing human subject data to EBRAINS. HDG covers the sharing of strongly pseudonymized or de-identified data, a limited range human subject data without direct identifiers and with very few indirect identifiers. 265 265 266 -|(% style="width:303px" %)((( 267 -[[image:My project (2).jpg||height="209" width="167"]] 323 +The HDG adds an an authentication layer on top of the data. This means that **data users **must request access to the data (via their EBRAINS account) and will receive access provided they actively accept the [[EBRAINS Access Policy>>https://ebrains.eu/terms#access-policy]], the [[EBRAINS General Terms of Use>>https://ebrains.eu/terms#general-terms-of-use]], and the [[EBRAINS Data Use Agreement>>https://ebrains.eu/terms#data-use-agreement]]. The account holder also have to accept that information about their request and access to specific data under HDG is being tracked and stored. **Data owners** must be aware that sharing under the HDG affects the legal responsibilities for the data. They must agree to joint control of the data (see the [[Data Provision Protocol v1>>url:https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]], section 1.4 - 1.5) and the Data Protection Officers of the responsible institutions must have accepted that the data can be shared under HDG. 268 268 269 - **JanGündling**325 +The HDG is an extension of the existing services and does not replace the future EBRAINS Service for sensitive data (planned for 2024) which is outside the domain of the current EBRAINS Data and Knowledge services. 270 270 271 -(% class="small" %)Curation Scientist, 272 -Phd Student 273 -Sensors and Cognitive Psychology (M. Sc.)(%%) 274 -(% class="small" style="color:#4a5568" %)**Human-Computer Interaction** 275 -)))|(% style="width:303px" %)((( 276 - 327 +---- 277 277 329 +== **The openMINDS metadata framework** == 278 278 331 +(% class="box floatinginfobox" %) 332 +((( 333 +[[[[image:https://github.com/HumanBrainProject/openMINDS/raw/main/img/light_openMINDS-logo.png||alt="openMINDS logo" height="87" width="164"]]>>https://github.com/HumanBrainProject/openMINDS]] 334 +))) 279 279 336 +openMINDS (open Metadata Initiative for Neuroscience Data Structures) is a community-driven, open-source metadata framework for graph database systems, such as the EBRAINS Knowledge Graph. It is composed of linked metadata models, libraries of serviceable metadata instances, and supportive tooling ([[openMINDS Python>>url:https://pypi.org/project/openMINDS/]], openMINDS Matlab). For exploring the openMINDS schemas, go to the [[HTML documentation>>url:https://humanbrainproject.github.io/openMINDS/]]. For a full overview of the framework, go to [[the openMINDS collab>>url:https://wiki.ebrains.eu/bin/view/Collabs/openminds/]] or the [[GitHub repository>>https://github.com/HumanBrainProject/openMINDS]]. 280 280 338 +For feedback, requests, or contributions, please get in touch with the openMINDS development team via 281 281 340 +* the support-email: [[openminds@ebrains.eu>>path:mailto:openminds@ebrains.eu]] 341 +* the [[GitHub issue tracker>>url:https://github.com/HumanBrainProject/openMINDS/issues]] 342 +* the INCF NeuroStars [[openMINDS Community Forum>>url:https://neurostars.org/t/openminds-community-forum-virtual/20156]] 282 282 344 +---- 283 283 346 +== **Add practical value to your shared data, model or software** == 284 284 285 285 349 +=== **Showcase shared data, models or software in other services** === 286 286 351 +Below is a list of additional services that data, models or software shared via EBRAINS can benefit from. EBRAINS is continuously looking to increase the number of interoperable services. 287 287 288 -**Lyuba Zehl** 289 289 290 -(% class="small" %)Knowledge Systems Engineer 291 -Dr. rer. nat. (Systems Neuroscience)(%%) 292 -(% class="small" style="color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis** 293 -)))|(% style="width:303px" %) | 354 +|(% colspan="2" %)**Viewer for 2D images** 355 +|[[image:MIO_screenshot.PNG]]|Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]]. 356 +|(% colspan="2" %)**Viewer for sequential atlas-registered 2D images with annotation options** 357 +|[[image:LZ_screenshot.PNG]]|Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]]. 358 +|(% colspan="2" %)**Interactive 3D atlas viewer with options for data visualization** 359 +|[[image:3Datlas_screenshot.PNG]]|Upload your data to the //Siibra-explorer//: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to register your data to atlases, read about the [[Atlas services on ebrains.eu>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]]. 360 +|(% colspan="2" %)**Use your research product in an interactive publication** 361 +|[[image:LivePaper_screenshot.PNG]]|Add your data, models or software to a// Live paper. //Read more about [[Live papers on ebrains.eu>>https://www.ebrains.eu/data/live-papers/live-papers]]. 294 294 295 295 ---- 296 296 297 -== **Add practical value to your shared data, model or software** == 298 - 299 - 300 300 ==== **Add a tutorial or learning resource ** ==== 301 301 302 302 (% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %) 303 -(% style="color:#000000" %)//More information will follow// 368 +(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow// 304 304 305 305 306 306 ==== **Create a workflow** ==== 307 307 308 308 (% class="wikigeneratedid" id="H-Workflows5Binformation5D" %) 309 -(% style="color:#000000" %)//More information will follow// 374 +(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow// 310 310 311 311 ---- 312 312 313 -== =**Showcaseshared data,models orsoftwareinotherservices** ===378 +== **General benefits of sharing data ** == 314 314 315 -B elowislist of additionalservicesthatdata,models or software sharedvia EBRAINScanbenefitfrom.EBRAINS is continuouslylookingto increase thenumber ofnteroperableservices.380 +By sharing your data via EBRAINS, you gain access to the following benefits: 316 316 317 - **Viewer for 2Dimages **382 +[[image:image-20230324170841-3.png]] 318 318 319 -* Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]]. 320 320 321 -**Viewer for sequential atlas-registered 2D images with annotation options** 322 322 323 - * Integrateatlas-registered2Dimagedata with //theLocaliZoom viewer//:TheEBRAINSLocaliZoom serial sectionviewerdisplays seriesof registered 2D section imageswithatlasoverlay,allowingtheuserstozoom intohigh-resolution imagesandaveinformationaboutthebrainregions.Seethe[[LocaliZoomlinksavailable for thisdataset>>https://doi.org/10.25493/T686-7BX]]asanexample.LocaliZoom usermanual isfound[[here>>https://localizoom.readthedocs.io/en/latest/index.html]].386 +We support you to better follow the [[FAIR^^ ^^guiding principles>>https://www.nature.com/articles/sdata201618]] for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}. Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product. 324 324 325 - **Use your research product in an interactive publication **388 +---- 326 326 327 - *Add yourdata, models or softwareoa// Livepaper. //Readmore about [[Livepaperson ebrains.eu>>https://www.ebrains.eu/data/live-papers/live-papers]].390 +== **Frequently asked questions ** == 328 328 329 - **Interactive3D atlasviewerwithoptionsfor datavisualization**392 +>Is the curation process time consuming and difficult? 330 330 331 - * Uploadyour data to //the Siibra//-explorer: The siibra-explorer is usedforvisualizing volumetricbraindatain allthe brain atlases providedby EBRAINS (Human,Monkey,Rat and Mouse). The siibra-explorerviewer uses siibra-api to enablenavigationofbrain regionhierarchies, maps indifferentcoordinatespaces,andlinked regionaldatafeatures. Furthermore, it is connected with the siibraoolsuite providing severalanalytical workflows.Tolearnmoreabouthowto register yourdata to atlases,read about the[[Atlasserviceson ebrains.eu>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]].394 +No, if communication is on a regular basis, we are able to finish curation within two weeks. Publishing your data naturally takes some effort but we will support you as much as possible. 332 332 333 - ----396 +>Is sharing my data also beneficial for me or only for others? 334 334 335 - === **The benefits of sharing data**===398 +When you publish your data via EBRAINS, we provide comprehensive data management support and safe long term storage - all free of charge. Additionally, your data can be cited, just like a scientific journal article. Sharing your data may even lead to new funding opportunities. Many funders specifically support projects that are part of the “Open Science” initiative. 336 336 337 - By sharingyourdatavia EBRAINS, you gain accesstothe followingbenefits:400 +>Can my data be too insignificant to share? 338 338 339 - [[image:image-20230324170841-3.png]]402 +No, there is no such thing as insignificant data. Data that is considered insignificant for a given topic, may have great significance for another. By making “insignificant” data publicly available, other researchers may find something interesting that was off-topic for your own purposes. 340 340 404 +>Can my data be easily misused if I share it? 341 341 406 +No, your data will be covered by a Creative Commons license of your choice. There are a variety of licenses available, enabling you to prevent use for specific purposes, e.g. commercial use. 342 342 343 - Wesupport you to better follow the [[FAIR^^^^guiding principles>>https://www.nature.com/articles/sdata201618]]for datamanagementandstewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principlesforscientificdatamanagementand stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.Publishingdata, models or code via EBRAINS willprovide youwith a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product.408 +>Can I share my data before my paper is published? 344 344 410 +Yes, if you do not want to share your data before publishing the results in an article, you can publish your dataset with an embargo status. This will make it possible to find information about the data without making the data itself available, and give you a citeable DOI. 411 + 412 +>Can I lose my competitive edge if I share my data before I publish the associated paper? 413 + 414 +No, publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data. 415 + 416 + 345 345 ---- 346 346 347 -== =**Frequentlyaskedquestions** ===419 +== (% style="color:#1a202c; font-family:inherit; font-size:29px" %)**The curation team: meet the curators**(%%) == 348 348 349 -((( 350 -==== ==== 421 +The EBRAINS curators help researchers publish their research using the EBRAINS Research Infrastructure. A curator’s job is similar to the job of an editor of a scientific journal, checking the data is organized, understandable, accessible and sufficiently described. 351 351 352 -((( 353 ->The curation process is time consuming and difficult 354 -))) 355 -))) 423 +The curators in EBRAINS are located in Oslo, Jülich, Trier and Paris. 424 + 356 356 357 -(% class="wikigeneratedid" id="HHowcanIshareA0models3F" %) 358 -Publishing your data naturally takes some time and effort but we will support you as much as possible. If communication is on a regular basis, we are able to finish basic curation - from the initial contact to dataset release - within two weeks. 426 +**Located in Norway** 359 359 360 ->Sharing my data is not beneficial for me - only for others 428 +|(% style="width:303px" %)((( 429 +[[image:My project2.jpg||height="209" width="167"]] 361 361 431 +**Archana Golla** 362 362 363 -When you publish your data via EBRAINS, we provide comprehensive data management support and safe long term storage - all free of charge. Additionally, your data can be cited, just like a scientific journal article. Sharing your data may even lead to new funding opportunities. Many funders specifically support projects that are part of the “Open Science” initiative. 433 +(% class="small" %)Curation Scientist 434 +Neuroscience (PhD)(%%) 435 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Behavioral neuroscience and microscopy** 436 +)))|(% style="width:303px" %)((( 437 +[[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]] 364 364 365 - >My datais too insignificanttoshare439 +**Camilla H. Blixhavn** 366 366 441 +(% class="small" %)Curation Scientist, 442 +Phd Student 443 +Neuroscience (M. Sc.)(%%) 444 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and data integration** 445 +)))|(% style="width:303px" %)((( 446 +[[image:My project (1).jpg||height="209" width="167"]] 367 367 368 - There isno such thingas insignificant data. Data that is consideredinsignificant for a given topic, may have great significance for another. By making “insignificant”datapublicly available, other researchers may find something interestingthat was off-topic for your own purposes.448 +**Ingrid Reiten** 369 369 370 ->My data can easily be misused if I share it with the world 450 +(% class="small" %)Curation Scientist, 451 +Phd Student 452 +Neuroscience (M. Sc.)(%%) 453 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and structural connectivity** 454 +)))|(% style="width:303px" %)((( 455 +[[image:My project1.jpg||height="209" width="167"]] 371 371 457 +**Sophia Pieschnik** 372 372 373 -Your data will be covered by a Creative Commons license of your choice. There are a variety of licenses available, enabling you to prevent use for specific purposes, e.g. commercial use. 459 +(% class="small" %)Curation Scientist 460 +Neurocognitive Psychology (M. Sc.)(%%) 461 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroimaging ** 462 +))) 374 374 375 ->I don't think I'm allowed to share my data 464 +|(% style="width:303px" %)((( 465 +[[image:My project.jpg||height="209" width="167"]] 376 376 467 +**Heidi Kleven** 377 377 378 -Many institutions are still very careful about what can be shared and how, but the situation is constantly evolving. As a researcher providing data, you will be asked to fill out an ethics compliance survey which survey to ensure that data published through the EBRAINS platform has been collected according to EU regulations. We are working on solutions for sharing anonymised human data that complies with GDPR standards to protect the identity of research subjects. 469 +(% class="small" %)Curation Scientist, 470 +Phd Student 471 +Neuroscience (M. Sc.)(%%) 472 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and brain atlases** 473 +)))| | | 379 379 380 ->I can't share my data before my paper is published 475 + 476 +\\**Located in Germany** 381 381 478 +|(% style="width:303px" %)((( 479 +[[image:My project (2).jpg||height="209" width="167"]] 382 382 383 - If you do not wantto share your data before publishing the results in an article, you can publish yourdataset with an embargo status. This will makeit possible to find information about the data without makingthe data itself available, and give you a citeable DOI.481 +**Jan Gündling** 384 384 385 ->If I share my data before I publish the associated paper, I will lose my competitive edge 483 +(% class="small" %)Curation Scientist, 484 +Phd Student 485 +Sensors and Cognitive Psychology (M. Sc.)(%%) 486 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Human-Computer Interaction** 487 +)))|(% style="width:303px" %)((( 488 +[[image:Lyuba.jpg||height="209" width="167"]] 386 386 490 +**Lyuba Zehl** 387 387 388 -Publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data. 492 +(% class="small" %)Knowledge Systems Engineer 493 +Dr. rer. nat. (Systems Neuroscience)(%%) 494 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis** 495 +)))|(% style="width:303px" %) |(% style="width:303px" %) 389 389 497 +---- 390 390 499 + 500 + 391 391 ---- 392 392 393 393 == Contact == ... ... @@ -394,9 +394,16 @@ 394 394 395 395 [[curation-support@ebrains.eu>>mailto:curation-support@ebrains.eu]] 396 396 507 +---- 397 397 509 +== Affiliated laboratories == 510 + 511 +//Institute of Basic Medical Sciences,** **University of Oslo, Norway (PI: Jan G. Bjaalie, Trygve B. Leergaard)// 512 + 513 +//Institute of Neuroscience and Medicine (INM-1), Research Centre Jülich, Germany (PI: Timo Dicksheid)// 514 + 515 +---- 516 + 517 +== References == 518 + 398 398 {{putFootnotes/}} 399 -~)~)~)~)~)~) 400 -~)~)~) 401 -~)~)~)~)~)~)~)~)~) 402 -~)~)~)~)~)~)
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