Changes for page data-curation-copy

Last modified by eapapp on 2023/07/04 16:46
From version 167.1
edited by eapapp
on 2023/06/06 13:46
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To version 157.1
edited by ingrreit
on 2023/06/05 10:48
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18 -
19 -
20 20  == Publishing neuroscience data, models and software via EBRAINS ==
21 21  
22 22  
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27 27  {{toc depth="3" start="2"/}}
28 28  {{/box}}
29 29  
11 +
30 30  == **Information to get started** ==
31 31  
32 32  **[[REQUEST CURATION>>https://nettskjema.no/a/277393#/]] to share data, simulations, computational models, and software, - or to add a new version of an existing one. **
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48 48  
49 49  (% class="box successmessage" %)
50 50  (((
51 -**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases. Reach us at [[curation-support@ebrains.eu>>mailto:curation-support@ebrains.eu]]
33 +**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases
52 52  )))
53 53  
54 54  ----
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73 73  
74 74  [[image:image-20230326054341-1.png]]
75 75  
76 -(% class="box floatinginfobox" id="share-data-infographic" %)
77 -(((
78 -(% style="text-align:center" %)
79 -//Download our infographic//
80 -//with all you need to know//
81 -//to share data on EBRAINS: //
82 -// //
83 -[[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]//
84 -)))
58 +==== [[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]//All you need to know to share data on EBRAINS.// ====
85 85  
86 86  
87 87  ==== **1. Provide some general information about your dataset** ====
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96 96  
97 97  This form collects the necessary information needed for us to evaluate whether we can ethically and legally share the data via EBRAINS.
98 98  
99 -See below for information about the ethical and legal aspects concerning sharing of human subject data.
100 100  
101 -
102 102  ==== **2. Upload data ** ====
103 103  
104 104  
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118 118  If a data collection is already uploaded elsewhere, we may link to the already existing repository.
119 119  
120 120  
121 -==== **3. Submit metadata** ====
93 +(% style="color:#1a202c; font-family:inherit; font-size:23px" %)**3. Submit metadata**
122 122  
123 123  
124 124  [[image:https://lh5.googleusercontent.com/WS4T2LhF9znWWChn3Z550agLrrb-KTWdYVsJSv0lh4cGjKbjuN1WV68WER9xkYqi1UqN7KYZz7bImYz3_TpOuTuvma7T192QUiUZoyJVPk1fj5NSDSQh_kpIeBufAOdDtsDRpPKK_P5EDPqRCTAaOTNyCw=s2048||height="91px;" width="91px;"]]**Submit metadata using the **[[EBRAINS Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]** (opt. 1), or through direct interaction with the Knowledge Graph (opt. 2) **
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195 195  
196 196  === Step by Step - Software ===
197 197  
198 -[[[[image:Screenshot 2023-06-06 1122082.png||alt="swc-flow.png" height="136" width="637"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
170 +[[[[image:swc-flow-no-header.png||alt="swc-flow.png"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
199 199  
200 -~1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions, you will find the links to your software and software version entries in the Knowledge Graph.
172 +~1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions you will find the links to your software and software version entries in the Knowledge Graph.
201 201  
202 202  2. Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary.
203 203  
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207 207  
208 208  For more information, visit our [[Guide to Software Curation in the EBRAINS Knowledge Graph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] or see our infographic below.
209 209  
210 -(% style="text-align: right;" %)
211 -==== //Software curation at a glance          //[[[[image:Thumb2.png||alt="EBRAINS-Share-Software.pdf" height="287" width="197"]]>>attach:EBRAINS-Share-Software-4.pdf]] ====
182 +[[[[image:Thumb.png||alt="EBRAINS-Share-Software.pdf" height="155" style="float:left" width="106"]]>>attach:EBRAINS-Share-Software.pdf]]
212 212  
184 +
185 +
186 +==== //Software curation at a glance// ====
187 +
188 +
189 +
190 +
213 213  ----
214 214  
215 215  == **The openMINDS metadata framework** ==
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240 240  
241 241  (% class="small" %)Curation Scientist
242 242  Neuroscience (PhD)(%%)
243 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Behavioral neuroscience and microscopy**
221 +(% class="small" style="color:#4a5568" %)**Behavioral neuroscience and microscopy**
244 244  )))|(% style="width:303px" %)(((
245 245  [[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]]
246 246  
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249 249  (% class="small" %)Curation Scientist,
250 250  Phd Student
251 251  Neuroscience (M. Sc.)(%%)
252 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and data integration**
230 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and data integration**
253 253  )))|(% style="width:303px" %)(((
254 254  [[image:My project (1).jpg||height="209" width="167"]]
255 255  
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258 258  (% class="small" %)Curation Scientist,
259 259  Phd Student
260 260  Neuroscience (M. Sc.)(%%)
261 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and structural connectivity**
239 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and structural connectivity**
262 262  )))|(% style="width:303px" %)(((
263 263  [[image:My project1.jpg||height="209" width="167"]]
264 264  
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266 266  
267 267  (% class="small" %)Curation Scientist
268 268  Neurocognitive Psychology (M. Sc.)(%%)
269 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroimaging **
247 +(% class="small" style="color:#4a5568" %)**Neuroimaging **
270 270  )))
271 271  
272 272  |(% style="width:303px" %)(((
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277 277  (% class="small" %)Curation Scientist,
278 278  Phd Student
279 279  Neuroscience (M. Sc.)(%%)
280 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and brain atlases**
258 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and brain atlases**
281 281  )))| | |
282 282  
283 283  
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291 291  (% class="small" %)Curation Scientist,
292 292  Phd Student
293 293  Sensors and Cognitive Psychology (M. Sc.)(%%)
294 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Human-Computer Interaction**
272 +(% class="small" style="color:#4a5568" %)**Human-Computer Interaction**
295 295  )))|(% style="width:303px" %)(((
296 296  
297 297  
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309 309  
310 310  (% class="small" %)Knowledge Systems Engineer
311 311  Dr. rer. nat. (Systems Neuroscience)(%%)
312 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
290 +(% class="small" style="color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
313 313  )))|(% style="width:303px" %) |
314 314  
315 315  ----
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317 317  == **Add practical value to your shared data, model or software** ==
318 318  
319 319  
298 +==== **Add a tutorial or learning resource ** ====
299 +
300 +(% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %)
301 +(% style="color:#000000" %)//More information will follow//
302 +
303 +
304 +==== **Create a workflow** ====
305 +
306 +(% class="wikigeneratedid" id="H-Workflows5Binformation5D" %)
307 +(% style="color:#000000" %)//More information will follow//
308 +
320 320  ----
321 321  
322 322  === **Showcase shared data, models or software in other services** ===
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341 341  
342 342  ----
343 343  
344 -==== **Add a tutorial or learning resource ** ====
345 -
346 -(% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %)
347 -(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
348 -
349 -
350 -==== **Create a workflow** ====
351 -
352 -(% class="wikigeneratedid" id="H-Workflows5Binformation5D" %)
353 -(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
354 -
355 -----
356 -
357 357  === **The benefits of sharing data ** ===
358 358  
359 359  By sharing your data via EBRAINS, you gain access to the following benefits:
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362 362  
363 363  
364 364  
365 -We support you to better follow the [[FAIR^^ ^^guiding principles>>https://www.nature.com/articles/sdata201618]] for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.  Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product.
341 +We support you to better follow the FAIR^^ ^^guiding principles for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.  Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product.
366 366  
367 367  ----
368 368  
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369 369  === **Frequently asked questions ** ===
370 370  
371 371  (((
372 -==== ====
348 +==== ====
373 373  
374 374  (((
375 375  >The curation process is time consuming and difficult
EBRAINS-Share-Software-4.pdf
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