Changes for page data-curation-copy

Last modified by eapapp on 2023/07/04 16:46
From version 168.1
edited by eapapp
on 2023/06/06 13:58
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To version 156.1
edited by ingrreit
on 2023/06/05 10:47
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18 -
19 -
20 20  == Publishing neuroscience data, models and software via EBRAINS ==
21 21  
22 22  
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27 27  {{toc depth="3" start="2"/}}
28 28  {{/box}}
29 29  
11 +
30 30  == **Information to get started** ==
31 31  
32 32  **[[REQUEST CURATION>>https://nettskjema.no/a/277393#/]] to share data, simulations, computational models, and software, - or to add a new version of an existing one. **
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48 48  
49 49  (% class="box successmessage" %)
50 50  (((
51 -**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases. Reach us at [[curation-support@ebrains.eu>>mailto:curation-support@ebrains.eu]]
33 +**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases
52 52  )))
53 53  
54 54  ----
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73 73  
74 74  [[image:image-20230326054341-1.png]]
75 75  
76 -(% class="box floatinginfobox" id="share-data-infographic" %)
77 -(((
78 -(% style="text-align:center" %)
79 -//Download our infographic//
80 -//with all you need to know//
81 -//to share data on EBRAINS: //
82 -// //
83 -[[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
58 +==== [[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]//All you need to know to share data on EBRAINS.// ====
84 84  
85 -
86 -)))
87 87  
88 -
89 89  ==== **1. Provide some general information about your dataset** ====
90 90  
91 91  
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98 98  
99 99  This form collects the necessary information needed for us to evaluate whether we can ethically and legally share the data via EBRAINS.
100 100  
101 -See below for information about the ethical and legal aspects concerning sharing of human subject data.
102 102  
103 -
104 104  ==== **2. Upload data ** ====
105 105  
106 106  
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120 120  If a data collection is already uploaded elsewhere, we may link to the already existing repository.
121 121  
122 122  
123 -==== **3. Submit metadata** ====
93 +(% style="color:#1a202c; font-family:inherit; font-size:23px" %)**3. Submit metadata**
124 124  
125 125  
126 126  [[image:https://lh5.googleusercontent.com/WS4T2LhF9znWWChn3Z550agLrrb-KTWdYVsJSv0lh4cGjKbjuN1WV68WER9xkYqi1UqN7KYZz7bImYz3_TpOuTuvma7T192QUiUZoyJVPk1fj5NSDSQh_kpIeBufAOdDtsDRpPKK_P5EDPqRCTAaOTNyCw=s2048||height="91px;" width="91px;"]]**Submit metadata using the **[[EBRAINS Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]** (opt. 1), or through direct interaction with the Knowledge Graph (opt. 2) **
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148 148  
149 149  Journal publications sufficiently describing the shared data, such as made available through [[Nature Scientific Data>>http://www.nature.com/sdata/about]], [[Elsevier Data in Brief>>http://www.journals.elsevier.com/data-in-brief/]], [[BMC Data note>>https://bmcresnotes.biomedcentral.com/submission-guidelines/preparing-your-manuscript/data-note]] and more, can replace the EBRAINS Data Descriptor.
150 150  
151 -(% class="box floatinginfobox" id="data-descriptor-infographic" %)
152 -(((
153 -(% style="text-align:center" %)
154 -//Download our infographic: //
155 -//The EBRAINS Data//
156 -//Descriptor at a glance//
157 -// //
158 -[[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
159 -
160 -)))
121 +==== [[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]//The EBRAINS Data descriptor at-a-glance// ====
161 161  
123 +
162 162  ==== **5. Preview and publish ** ====
163 163  
164 164  
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167 167  
168 168  ----
169 169  
170 -==== **Sharing human subject data ** ====
132 +==== **Sharing human data ** ====
171 171  
172 172  (% class="box floatinginfobox" %)
173 173  (((
174 174  **Human subject data that can be shared on EBRAINS:**
175 -// //
176 -// - Post-mortem data//
177 -// - Aggregated data//
178 -// - Strongly pseudonymized or de-identified subject data//
179 -// with a legal basis for sharing (e.g. Informed Consent)//
180 -// //
181 181  
182 -(% class="small" %)
183 -//If you have human data that does not qualify as any of the above,//
184 -//please [[get in touch>>https://www.ebrains.eu/contact/]] and we will clarify the available options.//
138 +- Post-mortem data
139 +- Aggregated data
140 +- Strongly pseudonymized or de-identified subject data with a legal basis for sharing (e.g. Informed Consent)
141 +
142 +(% class="small" %)//If you have human data that does not classify as any of the above, please get in touch and we will clarify the available options. //
185 185  )))
186 186  
187 -Human subject data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
145 +Human data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
188 188  
189 189  Post-mortem and aggregated human data can be shared openly, given direct identifiers in the metadata are removed. Strongly pseudonymized and de-identified data can be shared via the Human Data Gateway (HDG).
190 190  
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209 209  
210 210  === Step by Step - Software ===
211 211  
212 -[[[[image:Screenshot 2023-06-06 1122082.png||alt="swc-flow.png" height="136" width="637"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
170 +[[[[image:swc-flow-no-header.png||alt="swc-flow.png"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
213 213  
214 -~1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions, you will find the links to your software and software version entries in the Knowledge Graph.
172 +~1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions you will find the links to your software and software version entries in the Knowledge Graph.
215 215  
216 216  2. Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary.
217 217  
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221 221  
222 222  For more information, visit our [[Guide to Software Curation in the EBRAINS Knowledge Graph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] or see our infographic below.
223 223  
224 -(% style="text-align: right;" %)
225 -==== //Software curation at a glance          //[[[[image:Thumb2.png||alt="EBRAINS-Share-Software.pdf" height="287" width="197"]]>>attach:EBRAINS-Share-Software-4.pdf]] ====
182 +[[[[image:Thumb.png||alt="EBRAINS-Share-Software.pdf" height="155" style="float:left" width="106"]]>>attach:EBRAINS-Share-Software.pdf]]
226 226  
184 +
185 +
186 +==== //Software curation at a glance// ====
187 +
188 +
189 +
190 +
227 227  ----
228 228  
229 229  == **The openMINDS metadata framework** ==
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254 254  
255 255  (% class="small" %)Curation Scientist
256 256  Neuroscience (PhD)(%%)
257 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Behavioral neuroscience and microscopy**
221 +(% class="small" style="color:#4a5568" %)**Behavioral neuroscience and microscopy**
258 258  )))|(% style="width:303px" %)(((
259 259  [[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]]
260 260  
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263 263  (% class="small" %)Curation Scientist,
264 264  Phd Student
265 265  Neuroscience (M. Sc.)(%%)
266 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and data integration**
230 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and data integration**
267 267  )))|(% style="width:303px" %)(((
268 268  [[image:My project (1).jpg||height="209" width="167"]]
269 269  
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272 272  (% class="small" %)Curation Scientist,
273 273  Phd Student
274 274  Neuroscience (M. Sc.)(%%)
275 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and structural connectivity**
239 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and structural connectivity**
276 276  )))|(% style="width:303px" %)(((
277 277  [[image:My project1.jpg||height="209" width="167"]]
278 278  
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280 280  
281 281  (% class="small" %)Curation Scientist
282 282  Neurocognitive Psychology (M. Sc.)(%%)
283 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroimaging **
247 +(% class="small" style="color:#4a5568" %)**Neuroimaging **
284 284  )))
285 285  
286 286  |(% style="width:303px" %)(((
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291 291  (% class="small" %)Curation Scientist,
292 292  Phd Student
293 293  Neuroscience (M. Sc.)(%%)
294 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and brain atlases**
258 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and brain atlases**
295 295  )))| | |
296 296  
297 297  
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305 305  (% class="small" %)Curation Scientist,
306 306  Phd Student
307 307  Sensors and Cognitive Psychology (M. Sc.)(%%)
308 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Human-Computer Interaction**
272 +(% class="small" style="color:#4a5568" %)**Human-Computer Interaction**
309 309  )))|(% style="width:303px" %)(((
310 310  
311 311  
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323 323  
324 324  (% class="small" %)Knowledge Systems Engineer
325 325  Dr. rer. nat. (Systems Neuroscience)(%%)
326 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
290 +(% class="small" style="color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
327 327  )))|(% style="width:303px" %) |
328 328  
329 329  ----
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331 331  == **Add practical value to your shared data, model or software** ==
332 332  
333 333  
298 +==== **Add a tutorial or learning resource ** ====
299 +
300 +(% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %)
301 +(% style="color:#000000" %)//More information will follow//
302 +
303 +
304 +==== **Create a workflow** ====
305 +
306 +(% class="wikigeneratedid" id="H-Workflows5Binformation5D" %)
307 +(% style="color:#000000" %)//More information will follow//
308 +
334 334  ----
335 335  
336 336  === **Showcase shared data, models or software in other services** ===
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355 355  
356 356  ----
357 357  
358 -==== **Add a tutorial or learning resource ** ====
359 -
360 -(% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %)
361 -(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
362 -
363 -
364 -==== **Create a workflow** ====
365 -
366 -(% class="wikigeneratedid" id="H-Workflows5Binformation5D" %)
367 -(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
368 -
369 -----
370 -
371 371  === **The benefits of sharing data ** ===
372 372  
373 373  By sharing your data via EBRAINS, you gain access to the following benefits:
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376 376  
377 377  
378 378  
379 -We support you to better follow the [[FAIR^^ ^^guiding principles>>https://www.nature.com/articles/sdata201618]] for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.  Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product.
341 +We support you to better follow the FAIR^^ ^^guiding principles for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.  Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product.
380 380  
381 381  ----
382 382  
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383 383  === **Frequently asked questions ** ===
384 384  
385 385  (((
386 -==== ====
348 +==== ====
387 387  
388 388  (((
389 389  >The curation process is time consuming and difficult
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