Changes for page data-curation-copy

Last modified by eapapp on 2023/07/04 16:46
From version 168.1
edited by eapapp
on 2023/06/06 13:58
Change comment: There is no comment for this version
To version 161.1
edited by jan
on 2023/06/06 11:22
Change comment: Uploaded new attachment "Screenshot 2023-06-06 112208.png", version {1}

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1 -XWiki.eapapp
1 +XWiki.jan
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18 -
19 -
20 20  == Publishing neuroscience data, models and software via EBRAINS ==
21 21  
22 22  
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27 27  {{toc depth="3" start="2"/}}
28 28  {{/box}}
29 29  
11 +
30 30  == **Information to get started** ==
31 31  
32 32  **[[REQUEST CURATION>>https://nettskjema.no/a/277393#/]] to share data, simulations, computational models, and software, - or to add a new version of an existing one. **
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73 73  
74 74  [[image:image-20230326054341-1.png]]
75 75  
76 -(% class="box floatinginfobox" id="share-data-infographic" %)
77 -(((
78 -(% style="text-align:center" %)
79 -//Download our infographic//
80 -//with all you need to know//
81 -//to share data on EBRAINS: //
82 -// //
83 -[[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
58 +==== [[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]//All you need to know to share data on EBRAINS.// ====
84 84  
85 -
86 -)))
87 87  
88 -
89 89  ==== **1. Provide some general information about your dataset** ====
90 90  
91 91  
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148 148  
149 149  Journal publications sufficiently describing the shared data, such as made available through [[Nature Scientific Data>>http://www.nature.com/sdata/about]], [[Elsevier Data in Brief>>http://www.journals.elsevier.com/data-in-brief/]], [[BMC Data note>>https://bmcresnotes.biomedcentral.com/submission-guidelines/preparing-your-manuscript/data-note]] and more, can replace the EBRAINS Data Descriptor.
150 150  
151 -(% class="box floatinginfobox" id="data-descriptor-infographic" %)
152 -(((
153 -(% style="text-align:center" %)
154 -//Download our infographic: //
155 -//The EBRAINS Data//
156 -//Descriptor at a glance//
157 -// //
158 -[[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
159 -
160 -)))
123 +==== [[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]//The EBRAINS Data descriptor at-a-glance// ====
161 161  
125 +
162 162  ==== **5. Preview and publish ** ====
163 163  
164 164  
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172 172  (% class="box floatinginfobox" %)
173 173  (((
174 174  **Human subject data that can be shared on EBRAINS:**
175 -// //
176 -// - Post-mortem data//
177 -// - Aggregated data//
178 -// - Strongly pseudonymized or de-identified subject data//
179 -// with a legal basis for sharing (e.g. Informed Consent)//
180 -// //
181 181  
182 -(% class="small" %)
183 -//If you have human data that does not qualify as any of the above,//
184 -//please [[get in touch>>https://www.ebrains.eu/contact/]] and we will clarify the available options.//
140 +- Post-mortem data
141 +- Aggregated data
142 +- Strongly pseudonymized or de-identified subject data with a legal basis for sharing (e.g. Informed Consent)
143 +
144 +(% class="small" %)//If you have human data that does not classify as any of the above, please get in touch and we will clarify the available options. //
185 185  )))
186 186  
187 187  Human subject data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
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209 209  
210 210  === Step by Step - Software ===
211 211  
212 -[[[[image:Screenshot 2023-06-06 1122082.png||alt="swc-flow.png" height="136" width="637"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
172 +[[[[image:swc-flow-no-header.png||alt="swc-flow.png"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
213 213  
214 -~1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions, you will find the links to your software and software version entries in the Knowledge Graph.
174 +~1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions you will find the links to your software and software version entries in the Knowledge Graph.
215 215  
216 216  2. Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary.
217 217  
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221 221  
222 222  For more information, visit our [[Guide to Software Curation in the EBRAINS Knowledge Graph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] or see our infographic below.
223 223  
224 -(% style="text-align: right;" %)
225 -==== //Software curation at a glance          //[[[[image:Thumb2.png||alt="EBRAINS-Share-Software.pdf" height="287" width="197"]]>>attach:EBRAINS-Share-Software-4.pdf]] ====
184 +[[[[image:Thumb.png||alt="EBRAINS-Share-Software.pdf" height="155" style="float:left" width="106"]]>>attach:EBRAINS-Share-Software.pdf]]
226 226  
186 +
187 +
188 +==== //Software curation at a glance// ====
189 +
190 +
191 +
192 +
227 227  ----
228 228  
229 229  == **The openMINDS metadata framework** ==
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254 254  
255 255  (% class="small" %)Curation Scientist
256 256  Neuroscience (PhD)(%%)
257 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Behavioral neuroscience and microscopy**
223 +(% class="small" style="color:#4a5568" %)**Behavioral neuroscience and microscopy**
258 258  )))|(% style="width:303px" %)(((
259 259  [[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]]
260 260  
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263 263  (% class="small" %)Curation Scientist,
264 264  Phd Student
265 265  Neuroscience (M. Sc.)(%%)
266 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and data integration**
232 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and data integration**
267 267  )))|(% style="width:303px" %)(((
268 268  [[image:My project (1).jpg||height="209" width="167"]]
269 269  
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272 272  (% class="small" %)Curation Scientist,
273 273  Phd Student
274 274  Neuroscience (M. Sc.)(%%)
275 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and structural connectivity**
241 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and structural connectivity**
276 276  )))|(% style="width:303px" %)(((
277 277  [[image:My project1.jpg||height="209" width="167"]]
278 278  
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280 280  
281 281  (% class="small" %)Curation Scientist
282 282  Neurocognitive Psychology (M. Sc.)(%%)
283 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroimaging **
249 +(% class="small" style="color:#4a5568" %)**Neuroimaging **
284 284  )))
285 285  
286 286  |(% style="width:303px" %)(((
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291 291  (% class="small" %)Curation Scientist,
292 292  Phd Student
293 293  Neuroscience (M. Sc.)(%%)
294 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and brain atlases**
260 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and brain atlases**
295 295  )))| | |
296 296  
297 297  
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305 305  (% class="small" %)Curation Scientist,
306 306  Phd Student
307 307  Sensors and Cognitive Psychology (M. Sc.)(%%)
308 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Human-Computer Interaction**
274 +(% class="small" style="color:#4a5568" %)**Human-Computer Interaction**
309 309  )))|(% style="width:303px" %)(((
310 310  
311 311  
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323 323  
324 324  (% class="small" %)Knowledge Systems Engineer
325 325  Dr. rer. nat. (Systems Neuroscience)(%%)
326 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
292 +(% class="small" style="color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
327 327  )))|(% style="width:303px" %) |
328 328  
329 329  ----
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358 358  ==== **Add a tutorial or learning resource ** ====
359 359  
360 360  (% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %)
361 -(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
327 +(% style="color:#000000" %)//More information will follow//
362 362  
363 363  
364 364  ==== **Create a workflow** ====
365 365  
366 366  (% class="wikigeneratedid" id="H-Workflows5Binformation5D" %)
367 -(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
333 +(% style="color:#000000" %)//More information will follow//
368 368  
369 369  ----
370 370  
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383 383  === **Frequently asked questions ** ===
384 384  
385 385  (((
386 -==== ====
352 +==== ====
387 387  
388 388  (((
389 389  >The curation process is time consuming and difficult
EBRAINS-Share-Software-4.pdf
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