Changes for page data-curation-copy

Last modified by eapapp on 2023/07/04 16:46
From version 169.1
edited by spieschnik
on 2023/06/06 14:47
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To version 159.1
edited by ingrreit
on 2023/06/06 11:08
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18 -
19 -
20 20  == Publishing neuroscience data, models and software via EBRAINS ==
21 21  
22 22  
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27 27  {{toc depth="3" start="2"/}}
28 28  {{/box}}
29 29  
11 +
30 30  == **Information to get started** ==
31 31  
32 32  **[[REQUEST CURATION>>https://nettskjema.no/a/277393#/]] to share data, simulations, computational models, and software, - or to add a new version of an existing one. **
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73 73  
74 74  [[image:image-20230326054341-1.png]]
75 75  
76 -(% class="box floatinginfobox" id="share-data-infographic" %)
77 -(((
78 -(% style="text-align:center" %)
79 -//Download our infographic//
80 -//with all you need to know//
81 -//to share data on EBRAINS: //
82 -// //
83 -[[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
58 +==== [[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]//All you need to know to share data on EBRAINS.// ====
84 84  
85 -
86 -)))
87 87  
88 -
89 89  ==== **1. Provide some general information about your dataset** ====
90 90  
91 91  
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120 120  If a data collection is already uploaded elsewhere, we may link to the already existing repository.
121 121  
122 122  
123 -==== **3. Submit metadata** ====
95 +(% style="color:#1a202c; font-family:inherit; font-size:23px" %)**3. Submit metadata**
124 124  
125 125  
126 126  [[image:https://lh5.googleusercontent.com/WS4T2LhF9znWWChn3Z550agLrrb-KTWdYVsJSv0lh4cGjKbjuN1WV68WER9xkYqi1UqN7KYZz7bImYz3_TpOuTuvma7T192QUiUZoyJVPk1fj5NSDSQh_kpIeBufAOdDtsDRpPKK_P5EDPqRCTAaOTNyCw=s2048||height="91px;" width="91px;"]]**Submit metadata using the **[[EBRAINS Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]** (opt. 1), or through direct interaction with the Knowledge Graph (opt. 2) **
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148 148  
149 149  Journal publications sufficiently describing the shared data, such as made available through [[Nature Scientific Data>>http://www.nature.com/sdata/about]], [[Elsevier Data in Brief>>http://www.journals.elsevier.com/data-in-brief/]], [[BMC Data note>>https://bmcresnotes.biomedcentral.com/submission-guidelines/preparing-your-manuscript/data-note]] and more, can replace the EBRAINS Data Descriptor.
150 150  
151 -(% class="box floatinginfobox" id="data-descriptor-infographic" %)
152 -(((
153 -(% style="text-align:center" %)
154 -//Download our infographic: //
155 -//The EBRAINS Data//
156 -//Descriptor at a glance//
157 -// //
158 -[[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
159 -
160 -)))
123 +==== [[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]//The EBRAINS Data descriptor at-a-glance// ====
161 161  
125 +
162 162  ==== **5. Preview and publish ** ====
163 163  
164 164  
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172 172  (% class="box floatinginfobox" %)
173 173  (((
174 174  **Human subject data that can be shared on EBRAINS:**
175 -// //
176 -// - Post-mortem data//
177 -// - Aggregated data//
178 -// - Strongly pseudonymized or de-identified subject data//
179 -// with a legal basis for sharing (e.g. Informed Consent)//
180 -// //
181 181  
182 -(% class="small" %)
183 -//If you have human data that does not qualify as any of the above,//
184 -//please [[get in touch>>https://www.ebrains.eu/contact/]] and we will clarify the available options.//
140 +- Post-mortem data
141 +- Aggregated data
142 +- Strongly pseudonymized or de-identified subject data with a legal basis for sharing (e.g. Informed Consent)
143 +
144 +(% class="small" %)//If you have human data that does not classify as any of the above, please get in touch and we will clarify the available options. //
185 185  )))
186 186  
187 187  Human subject data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
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209 209  
210 210  === Step by Step - Software ===
211 211  
212 -[[[[image:Screenshot 2023-06-06 1122082.png||alt="swc-flow.png" height="136" width="637"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
172 +[[[[image:swc-flow-no-header.png||alt="swc-flow.png"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
213 213  
214 -~1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions, you will find the links to your software and software version entries in the Knowledge Graph.
174 +~1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions you will find the links to your software and software version entries in the Knowledge Graph.
215 215  
216 216  2. Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary.
217 217  
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221 221  
222 222  For more information, visit our [[Guide to Software Curation in the EBRAINS Knowledge Graph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] or see our infographic below.
223 223  
224 -(% style="text-align: right;" %)
225 -==== //Software curation at a glance          //[[[[image:Thumb2.png||alt="EBRAINS-Share-Software.pdf" height="287" width="197"]]>>attach:EBRAINS-Share-Software-4.pdf]] ====
184 +[[[[image:Thumb.png||alt="EBRAINS-Share-Software.pdf" height="155" style="float:left" width="106"]]>>attach:EBRAINS-Share-Software.pdf]]
226 226  
186 +
187 +
188 +==== //Software curation at a glance// ====
189 +
190 +
191 +
192 +
227 227  ----
228 228  
229 229  == **The openMINDS metadata framework** ==
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254 254  
255 255  (% class="small" %)Curation Scientist
256 256  Neuroscience (PhD)(%%)
257 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Behavioral neuroscience and microscopy**
223 +(% class="small" style="color:#4a5568" %)**Behavioral neuroscience and microscopy**
258 258  )))|(% style="width:303px" %)(((
259 259  [[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]]
260 260  
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263 263  (% class="small" %)Curation Scientist,
264 264  Phd Student
265 265  Neuroscience (M. Sc.)(%%)
266 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and data integration**
232 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and data integration**
267 267  )))|(% style="width:303px" %)(((
268 268  [[image:My project (1).jpg||height="209" width="167"]]
269 269  
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272 272  (% class="small" %)Curation Scientist,
273 273  Phd Student
274 274  Neuroscience (M. Sc.)(%%)
275 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and structural connectivity**
241 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and structural connectivity**
276 276  )))|(% style="width:303px" %)(((
277 277  [[image:My project1.jpg||height="209" width="167"]]
278 278  
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280 280  
281 281  (% class="small" %)Curation Scientist
282 282  Neurocognitive Psychology (M. Sc.)(%%)
283 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroimaging **
249 +(% class="small" style="color:#4a5568" %)**Neuroimaging **
284 284  )))
285 285  
286 286  |(% style="width:303px" %)(((
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291 291  (% class="small" %)Curation Scientist,
292 292  Phd Student
293 293  Neuroscience (M. Sc.)(%%)
294 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and brain atlases**
260 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and brain atlases**
295 295  )))| | |
296 296  
297 297  
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305 305  (% class="small" %)Curation Scientist,
306 306  Phd Student
307 307  Sensors and Cognitive Psychology (M. Sc.)(%%)
308 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Human-Computer Interaction**
309 -)))|(% style="width:328px" %)(((
274 +(% class="small" style="color:#4a5568" %)**Human-Computer Interaction**
275 +)))|(% style="width:303px" %)(((
310 310  
311 311  
312 312  
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314 314  
315 315  
316 316  
283 +
284 +
285 +
286 +
287 +
317 317  **Lyuba Zehl**
318 318  
319 319  (% class="small" %)Knowledge Systems Engineer
320 320  Dr. rer. nat. (Systems Neuroscience)(%%)
321 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
322 -)))|(% style="width:321px" %) |(% style="width:324px" %)
292 +(% class="small" style="color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
293 +)))|(% style="width:303px" %) |
323 323  
324 324  ----
325 325  
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326 326  == **Add practical value to your shared data, model or software** ==
327 327  
328 328  
300 +==== **Add a tutorial or learning resource ** ====
301 +
302 +(% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %)
303 +(% style="color:#000000" %)//More information will follow//
304 +
305 +
306 +==== **Create a workflow** ====
307 +
308 +(% class="wikigeneratedid" id="H-Workflows5Binformation5D" %)
309 +(% style="color:#000000" %)//More information will follow//
310 +
329 329  ----
330 330  
331 331  === **Showcase shared data, models or software in other services** ===
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350 350  
351 351  ----
352 352  
353 -==== **Add a tutorial or learning resource ** ====
354 -
355 -(% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %)
356 -(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
357 -
358 -
359 -==== **Create a workflow** ====
360 -
361 -(% class="wikigeneratedid" id="H-Workflows5Binformation5D" %)
362 -(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
363 -
364 -----
365 -
366 366  === **The benefits of sharing data ** ===
367 367  
368 368  By sharing your data via EBRAINS, you gain access to the following benefits:
... ... @@ -378,43 +378,47 @@
378 378  === **Frequently asked questions ** ===
379 379  
380 380  (((
381 -==== ====
350 +==== ====
382 382  
383 383  (((
384 ->Is the curation process time consuming and difficult?
353 +>The curation process is time consuming and difficult
385 385  )))
386 386  )))
387 387  
388 -
389 389  (% class="wikigeneratedid" id="HHowcanIshareA0models3F" %)
390 -No, if communication is on a regular basis, we are able to finish curation within two weeks. Publishing your data naturally takes some effort but we will support you as much as possible.
358 +Publishing your data naturally takes some time and effort but we will support you as much as possible. If communication is on a regular basis, we are able to finish basic curation - from the initial contact to dataset release - within two weeks.
391 391  
392 ->Is sharing my data also beneficial for me or only for others?
360 +>Sharing my data is not beneficial for me - only for others
393 393  
394 394  
395 395  When you publish your data via EBRAINS, we provide comprehensive data management support and safe long term storage - all free of charge. Additionally, your data can be cited, just like a scientific journal article. Sharing your data may even lead to new funding opportunities. Many funders specifically support projects that are part of the “Open Science” initiative.
396 396  
397 ->Can my data be too insignificant to share?
365 +>My data is too insignificant to share
398 398  
399 399  
400 -No, there is no such thing as insignificant data. Data that is considered insignificant for a given topic, may have great significance for another. By making “insignificant” data publicly available, other researchers may find something interesting that was off-topic for your own purposes.
368 +There is no such thing as insignificant data. Data that is considered insignificant for a given topic, may have great significance for another. By making “insignificant” data publicly available, other researchers may find something interesting that was off-topic for your own purposes.
401 401  
402 ->Can my data be easily misused if I share it?
370 +>My data can easily be misused if I share it with the world
403 403  
404 404  
405 -No, your data will be covered by a Creative Commons license of your choice. There are a variety of licenses available, enabling you to prevent use for specific purposes, e.g. commercial use.
373 +Your data will be covered by a Creative Commons license of your choice. There are a variety of licenses available, enabling you to prevent use for specific purposes, e.g. commercial use.
406 406  
407 ->Can I share my data before my paper is published?
375 +>I don't think I'm allowed to share my data
408 408  
409 409  
410 -Yes, if you do not want to share your data before publishing the results in an article, you can publish your dataset with an embargo status. This will make it possible to find information about the data without making the data itself available, and give you a citeable DOI.
378 +Many institutions are still very careful about what can be shared and how, but the situation is constantly evolving. As a researcher providing data, you will be asked to fill out an ethics compliance survey which survey to ensure that data published through the EBRAINS platform has been collected according to EU regulations. We are working on solutions for sharing anonymised human data that complies with GDPR standards to protect the identity of research subjects.
411 411  
412 ->Can I lose my competitive edge if I share my data before I publish the associated paper?
380 +>I can't share my data before my paper is published
413 413  
414 414  
415 -No, publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data.
383 +If you do not want to share your data before publishing the results in an article, you can publish your dataset with an embargo status. This will make it possible to find information about the data without making the data itself available, and give you a citeable DOI.
416 416  
385 +>If I share my data before I publish the associated paper, I will lose my competitive edge
417 417  
387 +
388 +Publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data.
389 +
390 +
418 418  ----
419 419  
420 420  == Contact ==
EBRAINS-Share-Software-4.pdf
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