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edited by ingrreit
on 2023/06/05 10:34
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18 -
19 -
20 20  == Publishing neuroscience data, models and software via EBRAINS ==
21 21  
22 22  
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27 27  {{toc depth="3" start="2"/}}
28 28  {{/box}}
29 29  
11 +
30 30  == **Information to get started** ==
31 31  
32 32  **[[REQUEST CURATION>>https://nettskjema.no/a/277393#/]] to share data, simulations, computational models, and software, - or to add a new version of an existing one. **
... ... @@ -34,10 +34,8 @@
34 34  Have you already published your data somewhere else? You can increase the exposure and impact of your shared dataset by also listing it on EBRAINS.
35 35  
36 36  
37 -(% class="box" style="text-align: center; font-size: 1.2em" %)
38 -(((
39 -Search existing data, models and software in the [[EBRAINS Knowledge Graph >>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]]
40 -)))
19 +(% style="text-align: center;" %)
20 +Search existing data, models and software in [[the EBRAINS Knowledge Graph Search>>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]]
41 41  
42 42  
43 43  EBRAINS accepts data from all modalities and from all species, as well as models, software, web services and metadata models (collectively referred to as research products) for sharing. You'll find detailed information about how to share each research product below. 
... ... @@ -50,7 +50,7 @@
50 50  
51 51  (% class="box successmessage" %)
52 52  (((
53 -**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases. Reach us at [[curation-support@ebrains.eu>>mailto:curation-support@ebrains.eu]]
33 +**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases
54 54  )))
55 55  
56 56  ----
... ... @@ -75,41 +75,27 @@
75 75  
76 76  [[image:image-20230326054341-1.png]]
77 77  
78 -(% class="box floatinginfobox" id="share-data-infographic" %)
79 -(((
80 -(% style="text-align:center" %)
81 -//Download our infographic//
82 -//with all you need to know//
83 -//to share data on EBRAINS: //
84 -// //
85 -[[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
58 +==== ====
86 86  
87 -
88 -)))
60 +(% style="width:1841.22px" %)
61 +|(% style="width:344px" %)(((
62 +[[[[image:image-20230324171114-2.png||height="354" width="250"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
63 +)))|(% style="width:1493px" %)//Collection of useful information for researchers looking to share experimental data on EBRAINS.//
89 89  
90 -
91 91  ==== **1. Provide some general information about your dataset** ====
92 92  
93 93  
94 -[[image:https://lh3.googleusercontent.com/zh7TvO6w04YGW9jIhfhmdT6CexdGs-AWOLfJXKRq7-tdHOu6ar1rOQx8o4rZevrjXqgPZ7-Ejv4b6X9XpgXuHpdUXi-mBTHIUnv5Vz-DktHt0sP-PZ3gE8XgZid3TV3swV1uTCBhHx11ge0pjP7RVxswGQ=s2048||height="85px;" width="91px;"]]** Fill in the [[Curation request form>>https://nettskjema.no/a/277393#/]]. **
68 +[[image:https://lh3.googleusercontent.com/zh7TvO6w04YGW9jIhfhmdT6CexdGs-AWOLfJXKRq7-tdHOu6ar1rOQx8o4rZevrjXqgPZ7-Ejv4b6X9XpgXuHpdUXi-mBTHIUnv5Vz-DktHt0sP-PZ3gE8XgZid3TV3swV1uTCBhHx11ge0pjP7RVxswGQ=s2048||height="85px;" width="91px;"]]** Fill in the [[Curation request form>>https://nettskjema.no/a/277393#/]]. **This form collects preliminary information about your data, allowing us to assess whether the dataset fits within the scope of EBRAINS. The submission generates a curation ID allowing us to track the case.
95 95  
96 -This form collects preliminary information about your data, allowing us to assess whether the dataset fits within the scope of EBRAINS. The submission generates a curation ID allowing us to track the case.
97 97  
71 +[[image:https://lh6.googleusercontent.com/yw442oS6BwZOlY-_0BoVxyCW3DrdcJ5ogCes92iOD16_rgNEVk56aNMDaVWXFfBLYv24bHzmGgBF9wg0szjH70xzuRTqxoQAeuy3knNO7axCHoyZDXwtyTcMgFnYwbOYxOT29LK-zchrUKLW6Mle93kOkQ=s2048||height="94px;" width="94px;"]]**Fill in the [[Ethics and Regulatory compliance form>>https://nettskjema.no/a/224765]]**. This form collects the necessary information needed for us to evaluate whether we can ethically and legally share the data via EBRAINS.
98 98  
99 -[[image:https://lh6.googleusercontent.com/yw442oS6BwZOlY-_0BoVxyCW3DrdcJ5ogCes92iOD16_rgNEVk56aNMDaVWXFfBLYv24bHzmGgBF9wg0szjH70xzuRTqxoQAeuy3knNO7axCHoyZDXwtyTcMgFnYwbOYxOT29LK-zchrUKLW6Mle93kOkQ=s2048||height="94px;" width="94px;"]]**Fill in the [[Ethics and Regulatory compliance form>>https://nettskjema.no/a/224765]]**.
100 100  
101 -This form collects the necessary information needed for us to evaluate whether we can ethically and legally share the data via EBRAINS.
102 -
103 -See below for information about the ethical and legal aspects concerning sharing of human subject data.
104 -
105 -
106 106  ==== **2. Upload data ** ====
107 107  
108 108  
109 -[[image:https://lh5.googleusercontent.com/sieKO-kW8O18iPaUyonwyo4UfHBmtc2E9BDnjbx52j6J_uGmm-OzGAo7sloMk3sYwKa6QW3hYQsOA9N4H7uGQpca088Wrk0Nurpt_J3B0-NSbcaPNdZIh21otQcG6jnAxLGiKoEvkTyaDGTMk3fu7me8mQ=s2048||height="94px;" width="94px;"]]**Ensure data is structured consistently prior to upload. **
77 +[[image:https://lh5.googleusercontent.com/sieKO-kW8O18iPaUyonwyo4UfHBmtc2E9BDnjbx52j6J_uGmm-OzGAo7sloMk3sYwKa6QW3hYQsOA9N4H7uGQpca088Wrk0Nurpt_J3B0-NSbcaPNdZIh21otQcG6jnAxLGiKoEvkTyaDGTMk3fu7me8mQ=s2048||height="94px;" width="94px;"]]**Ensure data is structured consistently prior to upload. **We look for organized data, not organized according to our standard. This is to support the broadest degree of sharing possible. We do however require that the data is organized in a consistent and precise manner. Please see our// //[[collection of guidelines on data organization>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] for further guidance.
110 110  
111 -We look for organized data, not organized according to our standard. This is to support the broadest degree of sharing possible. We do however require that the data is organized in a consistent and precise manner. Please see our// //[[collection of guidelines on data organization>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] for further guidance.
112 -
113 113  [[image:https://lh5.googleusercontent.com/EWtYwfVlbeC-jqPasgmzidqc50GrkKIEgwXeUeql8aaMHIukmFdWEy0nufVWWATbxDDK3XwwZEDmASrbpCsBk1u0HpAd8x4ZgAMsMPRcWyrb9etlV6FgKE_QN2e6SqKxHE0rzkR8uI1rRW_5z21TFGYVnw=s2048||height="91px;" width="91px;"]]**Upload data to EBRAINS Storage, either using a drag-and-drop solution (opt. 1) or an interactive python script (opt. 2).**
114 114  
115 115  //Opt. 1. //For smaller datasets with a reasonable amount of files, we recommend using the Collab-Bucket solution (drag-and-drop). A Collab Bucket must first be assigned to a dataset, which happens when a datasets is accepted for sharing.
... ... @@ -122,12 +122,15 @@
122 122  If a data collection is already uploaded elsewhere, we may link to the already existing repository.
123 123  
124 124  
91 +
92 +|(% style="width:369px" %) |(% style="width:1467px" %)
93 +
125 125  ==== **3. Submit metadata** ====
126 126  
127 127  
128 -[[image:https://lh5.googleusercontent.com/WS4T2LhF9znWWChn3Z550agLrrb-KTWdYVsJSv0lh4cGjKbjuN1WV68WER9xkYqi1UqN7KYZz7bImYz3_TpOuTuvma7T192QUiUZoyJVPk1fj5NSDSQh_kpIeBufAOdDtsDRpPKK_P5EDPqRCTAaOTNyCw=s2048||height="91px;" width="91px;"]]**Submit metadata using the **[[EBRAINS Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]** (opt. 1), or through direct interaction with the Knowledge Graph (opt. 2) **
97 +[[image:https://lh5.googleusercontent.com/WS4T2LhF9znWWChn3Z550agLrrb-KTWdYVsJSv0lh4cGjKbjuN1WV68WER9xkYqi1UqN7KYZz7bImYz3_TpOuTuvma7T192QUiUZoyJVPk1fj5NSDSQh_kpIeBufAOdDtsDRpPKK_P5EDPqRCTAaOTNyCw=s2048||height="91px;" width="91px;"]]**Submit metadata using our **[[EBRAINS Metadata wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]** (opt. 1), or through direct interaction with the Knowledge Graph (opt. 2) **
129 129  
130 -//Opt. 1.// Manually submit the minimal required metadata via the [[EBRAINS Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. The minimal required metadata covers extended bibliographic information necessary to publish your dataset on EBRAINS. The submitted information, including uploaded files, will be sent to the Curation team automatically
99 +//Opt. 1.// Manually submit the minimal required metadata via the [[EBRAINS Metadata wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. The minimal required metadata covers extended bibliographic information necessary to publish your dataset on EBRAINS. The submitted information, including uploaded files, will be sent to the Curation team automatically
131 131  
132 132  //Opt. 2.// To go beyond the minimal required metadata, you can directly interact with the Knowledge Graph (KG) in your private space. Within the private space, you can upload metadata and interact with them, moreover you can connect your metadata to existing publicly accessible entries. Access to your private space is granted upon the initiation of the curation process. You can access your private space via:
133 133  
... ... @@ -138,29 +138,29 @@
138 138  Datasets published through the EBRAINS Knowledge Graph have to be registered using **openMINDS compliant metadata** delivered as JSON-LD files. See this summary table for an overview of [[the minimally required openMINDS properties for publishing>>https://drive.ebrains.eu/lib/47995dbc-f576-4008-a76c-eefbfd818529/file/ebrains-minimum-required-metadata.xlsx]] on EBRAINS.
139 139  
140 140  
110 +**The openMINDS metadata framework**
111 +
112 +openMINDS (open Metadata Initiative for Neuroscience Data Structures) is a community-driven, open-source metadata framework for graph database systems, such as the EBRAINS Knowledge Graph. It is composed of linked metadata models, libraries of serviceable metadata instances, and supportive tooling ([[openMINDS Python>>url:https://pypi.org/project/openMINDS/]], openMINDS Matlab). For exploring the openMINDS schemas, go to the [[HTML documentation>>url:https://humanbrainproject.github.io/openMINDS/]]. For a full overview of the framework, go to [[the openMINDS collab>>url:https://wiki.ebrains.eu/bin/view/Collabs/openminds/]] or the [[GitHub repository>>https://github.com/HumanBrainProject/openMINDS]].
113 +
114 +For feedback, requests, or contributions, please get in touch with the openMINDS development team via
115 +
116 +* the support-email: [[openminds@ebrains.eu>>path:mailto:openminds@ebrains.eu]]
117 +* the [[GitHub issue tracker>>url:https://github.com/HumanBrainProject/openMINDS/issues]]
118 +* the INCF NeuroStars [[openMINDS Community Forum>>url:https://neurostars.org/t/openminds-community-forum-virtual/20156]]
119 +
141 141  ==== **4. Write a Data Descriptor ** ====
142 142  
143 -[[image:https://lh4.googleusercontent.com/lMYEKOXzejbBydOdotWWteXQo7j363xRyntBGjcPZVEdtIU1CJYX7q1STpdr2JPZK4hpWWXk20UlkUOqDGL5kX6vnQVBSdrfUo6EGfXOwpuGq1Uygv0tTZJ0lRO6voJvg56QC2mufvjAcRXGfAKFOjtc6w=s2048||height="94px;" width="94px;"]]**Write a data descriptor by filling in **[[this template>>https://drive.ebrains.eu/f/a2e07c95b1a54090bbbc/?dl=1]]** . **
144 144  
145 -The Data Descriptor is a document helping others interpret and reuse (and prevent misuse) of your data, and is critical to achieve a basic level of FAIR. The document will be uploaded in the repository of the data, shared as a PDF. 
123 +[[image:https://lh4.googleusercontent.com/lMYEKOXzejbBydOdotWWteXQo7j363xRyntBGjcPZVEdtIU1CJYX7q1STpdr2JPZK4hpWWXk20UlkUOqDGL5kX6vnQVBSdrfUo6EGfXOwpuGq1Uygv0tTZJ0lRO6voJvg56QC2mufvjAcRXGfAKFOjtc6w=s2048||height="94px;" width="94px;"]]**Write a data descriptor by filling in **[[this template>>https://drive.ebrains.eu/f/a2e07c95b1a54090bbbc/?dl=1]]** . **The Data Descriptor is a document helping others interpret and reuse (and prevent misuse) of your data, and is critical to achieve a basic level of FAIR. The document will be uploaded in the repository of the data, shared as a PDF. 
146 146  
147 -See our infographic about the data descriptor for inspiration or guidance.
148 148  
149 -Check out previous examples in the KG Search. See e.g., the data descriptor for the dataset "[[Anterogradely labeled axonal projections from the orbitofrontal cortex in rat>>https://doi.org/10.25493/2MX9-3XF]]".
126 +Check out previous examples in the KG Search! See e.g., the data descriptor for the dataset "[[Anterogradely labeled axonal projections from the orbitofrontal cortex in rat>>https://doi.org/10.25493/2MX9-3XF]]".
150 150  
151 151  Journal publications sufficiently describing the shared data, such as made available through [[Nature Scientific Data>>http://www.nature.com/sdata/about]], [[Elsevier Data in Brief>>http://www.journals.elsevier.com/data-in-brief/]], [[BMC Data note>>https://bmcresnotes.biomedcentral.com/submission-guidelines/preparing-your-manuscript/data-note]] and more, can replace the EBRAINS Data Descriptor.
152 152  
153 -(% class="box floatinginfobox" id="data-descriptor-infographic" %)
154 -(((
155 -(% style="text-align:center" %)
156 -//Download our infographic: //
157 -//The EBRAINS Data//
158 -//Descriptor at a glance//
159 -// //
160 -[[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
161 -
162 -)))
163 163  
131 +|(% style="width:175px" %)[[[[image:image-20230324171109-1.png||height="154" width="109"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]|(% style="width:1662px" %)The EBRAINS Data descriptor at-a-glance
132 +
164 164  ==== **5. Preview and publish ** ====
165 165  
166 166  
... ... @@ -169,24 +169,20 @@
169 169  
170 170  ----
171 171  
172 -==== **Sharing human subject data ** ====
141 +==== **Sharing human data ** ====
173 173  
174 174  (% class="box floatinginfobox" %)
175 175  (((
176 -**Human subject data that can be shared on EBRAINS:**
177 -// //
178 -// - Post-mortem data//
179 -// - Aggregated data//
180 -// - Strongly pseudonymized or de-identified subject data//
181 -// with a legal basis for sharing (e.g. Informed Consent)//
182 -// //
145 +**Human subject data that can be shared on EBRAINS consists of:**
183 183  
184 -(% class="small" %)
185 -//If you have human data that does not qualify as any of the above,//
186 -//please [[get in touch>>https://www.ebrains.eu/contact/]] and we will clarify the available options.//
147 +- Post-mortem data
148 +- Aggregated data
149 +- Strongly pseudonymized or de-identified subject data with a legal basis for sharing (e.g. Informed Consent)
150 +
151 +(% class="small" %)//If you have human data that does not classify as any of the above, please get in touch and we will clarify the available options. //
187 187  )))
188 188  
189 -Human subject data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
154 +Human data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
190 190  
191 191  Post-mortem and aggregated human data can be shared openly, given direct identifiers in the metadata are removed. Strongly pseudonymized and de-identified data can be shared via the Human Data Gateway (HDG).
192 192  
... ... @@ -211,38 +211,25 @@
211 211  
212 212  === Step by Step - Software ===
213 213  
179 +[[[[image:swc-flow-no-header.png||alt="swc-flow.png"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
214 214  
215 -(% class="box floatinginfobox" id="software-curation-infographic" %)
216 -(((
217 -(% style="text-align:center" %)
218 -//Software curation at a glance//
219 -// //
220 -[[[[image:Thumb2.png||alt="EBRAINS-Share-Software.pdf" height="287" width="197"]]>>attach:EBRAINS-Share-Software-4.pdf]]
221 -)))
181 +~1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions you will find the links to your software and software version entries in the Knowledge Graph.
222 222  
223 -(% style="margin-left:15px" %)[[[[image:Screenshot 2023-06-06 1122082.png||alt="swc-flow.png" height="136" width="637"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
183 +2. Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary.
224 224  
225 -1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions, you will find the links to your software and software version entries in the Knowledge Graph.
226 -1. Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary.
227 -1. After a quality check, we integrate and publish the information to the Knowledge Graph. Your software is then searchable and usable for the neuroscience community.
185 +3. After a quality check, we integrate and publish the information to the Knowledge Graph. Your software is then searchable and usable for the neuroscience community.[[[[image:Thumb.png||alt="EBRAINS-Share-Software.pdf" height="315" style="float:right" width="215"]]>>attach:EBRAINS-Share-Software.pdf]]
228 228  
229 229  If you want to add a new version to an already curated software, please request this via the [[curation request form>>https://nettskjema.no/a/277393]].
230 230  
231 -For more information, visit our [[Guide to Software Curation in the EBRAINS Knowledge Graph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] or see our infographic on the right.
189 +For more information, visit our [[Guide to Software Curation in the EBRAINS Knowledge Graph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] or see our infographic.
232 232  
233 233  
234 -----
235 235  
236 -== **The openMINDS metadata framework** ==
237 237  
238 -openMINDS (open Metadata Initiative for Neuroscience Data Structures) is a community-driven, open-source metadata framework for graph database systems, such as the EBRAINS Knowledge Graph. It is composed of linked metadata models, libraries of serviceable metadata instances, and supportive tooling ([[openMINDS Python>>url:https://pypi.org/project/openMINDS/]], openMINDS Matlab). For exploring the openMINDS schemas, go to the [[HTML documentation>>url:https://humanbrainproject.github.io/openMINDS/]]. For a full overview of the framework, go to [[the openMINDS collab>>url:https://wiki.ebrains.eu/bin/view/Collabs/openminds/]] or the [[GitHub repository>>https://github.com/HumanBrainProject/openMINDS]].
239 239  
240 -For feedback, requests, or contributions, please get in touch with the openMINDS development team via
241 241  
242 -* the support-email: [[openminds@ebrains.eu>>path:mailto:openminds@ebrains.eu]]
243 -* the [[GitHub issue tracker>>url:https://github.com/HumanBrainProject/openMINDS/issues]]
244 -* the INCF NeuroStars [[openMINDS Community Forum>>url:https://neurostars.org/t/openminds-community-forum-virtual/20156]]
245 245  
197 +
246 246  ----
247 247  
248 248  == **The curation team: meet the curators** ==
... ... @@ -261,7 +261,7 @@
261 261  
262 262  (% class="small" %)Curation Scientist
263 263  Neuroscience (PhD)(%%)
264 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Behavioral neuroscience and microscopy**
216 +(% class="small" style="color:#4a5568" %)**Behavioral neuroscience and microscopy**
265 265  )))|(% style="width:303px" %)(((
266 266  [[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]]
267 267  
... ... @@ -270,7 +270,7 @@
270 270  (% class="small" %)Curation Scientist,
271 271  Phd Student
272 272  Neuroscience (M. Sc.)(%%)
273 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and data integration**
225 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and data integration**
274 274  )))|(% style="width:303px" %)(((
275 275  [[image:My project (1).jpg||height="209" width="167"]]
276 276  
... ... @@ -279,7 +279,7 @@
279 279  (% class="small" %)Curation Scientist,
280 280  Phd Student
281 281  Neuroscience (M. Sc.)(%%)
282 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and structural connectivity**
234 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and structural connectivity**
283 283  )))|(% style="width:303px" %)(((
284 284  [[image:My project1.jpg||height="209" width="167"]]
285 285  
... ... @@ -287,7 +287,7 @@
287 287  
288 288  (% class="small" %)Curation Scientist
289 289  Neurocognitive Psychology (M. Sc.)(%%)
290 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroimaging **
242 +(% class="small" style="color:#4a5568" %)**Neuroimaging **
291 291  )))
292 292  
293 293  |(% style="width:303px" %)(((
... ... @@ -298,7 +298,7 @@
298 298  (% class="small" %)Curation Scientist,
299 299  Phd Student
300 300  Neuroscience (M. Sc.)(%%)
301 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and brain atlases**
253 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and brain atlases**
302 302  )))| | |
303 303  
304 304  
... ... @@ -312,8 +312,8 @@
312 312  (% class="small" %)Curation Scientist,
313 313  Phd Student
314 314  Sensors and Cognitive Psychology (M. Sc.)(%%)
315 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Human-Computer Interaction**
316 -)))|(% style="width:328px" %)(((
267 +(% class="small" style="color:#4a5568" %)**Human-Computer Interaction**
268 +)))|(% style="width:303px" %)(((
317 317  
318 318  
319 319  
... ... @@ -321,12 +321,17 @@
321 321  
322 322  
323 323  
276 +
277 +
278 +
279 +
280 +
324 324  **Lyuba Zehl**
325 325  
326 326  (% class="small" %)Knowledge Systems Engineer
327 327  Dr. rer. nat. (Systems Neuroscience)(%%)
328 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
329 -)))|(% style="width:321px" %) |(% style="width:324px" %)
285 +(% class="small" style="color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
286 +)))|(% style="width:303px" %) |
330 330  
331 331  ----
332 332  
... ... @@ -333,6 +333,17 @@
333 333  == **Add practical value to your shared data, model or software** ==
334 334  
335 335  
293 +==== **Add a tutorial or learning resource ** ====
294 +
295 +(% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %)
296 +(% style="color:#000000" %)//More information will follow//
297 +
298 +
299 +==== **Create a workflow** ====
300 +
301 +(% class="wikigeneratedid" id="H-Workflows5Binformation5D" %)
302 +(% style="color:#000000" %)//More information will follow//
303 +
336 336  ----
337 337  
338 338  === **Showcase shared data, models or software in other services** ===
... ... @@ -357,19 +357,6 @@
357 357  
358 358  ----
359 359  
360 -==== **Add a tutorial or learning resource ** ====
361 -
362 -(% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %)
363 -(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
364 -
365 -
366 -==== **Create a workflow** ====
367 -
368 -(% class="wikigeneratedid" id="H-Workflows5Binformation5D" %)
369 -(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
370 -
371 -----
372 -
373 373  === **The benefits of sharing data ** ===
374 374  
375 375  By sharing your data via EBRAINS, you gain access to the following benefits:
... ... @@ -378,50 +378,57 @@
378 378  
379 379  
380 380  
381 -We support you to better follow the [[FAIR^^ ^^guiding principles>>https://www.nature.com/articles/sdata201618]] for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.  Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product.
336 +We support you to better follow the FAIR^^ ^^guiding principles for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.  Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product.
382 382  
338 +
383 383  ----
384 384  
341 +=== ===
342 +
385 385  === **Frequently asked questions ** ===
386 386  
387 387  (((
388 -==== ====
346 +==== ====
389 389  
390 390  (((
391 ->Is the curation process time consuming and difficult?
349 +>The curation process is time consuming and difficult
392 392  )))
393 393  )))
394 394  
395 -
396 396  (% class="wikigeneratedid" id="HHowcanIshareA0models3F" %)
397 -No, if communication is on a regular basis, we are able to finish curation within two weeks. Publishing your data naturally takes some effort but we will support you as much as possible.
354 +Publishing your data naturally takes some time and effort but we will support you as much as possible. If communication is on a regular basis, we are able to finish basic curation - from the initial contact to dataset release - within two weeks.
398 398  
399 ->Is sharing my data also beneficial for me or only for others?
356 +>Sharing my data is not beneficial for me - only for others
400 400  
401 401  
402 402  When you publish your data via EBRAINS, we provide comprehensive data management support and safe long term storage - all free of charge. Additionally, your data can be cited, just like a scientific journal article. Sharing your data may even lead to new funding opportunities. Many funders specifically support projects that are part of the “Open Science” initiative.
403 403  
404 ->Can my data be too insignificant to share?
361 +>My data is too insignificant to share
405 405  
406 406  
407 -No, there is no such thing as insignificant data. Data that is considered insignificant for a given topic, may have great significance for another. By making “insignificant” data publicly available, other researchers may find something interesting that was off-topic for your own purposes.
364 +There is no such thing as insignificant data. Data that is considered insignificant for a given topic, may have great significance for another. By making “insignificant” data publicly available, other researchers may find something interesting that was off-topic for your own purposes.
408 408  
409 ->Can my data be easily misused if I share it?
366 +>My data can easily be misused if I share it with the world
410 410  
411 411  
412 -No, your data will be covered by a Creative Commons license of your choice. There are a variety of licenses available, enabling you to prevent use for specific purposes, e.g. commercial use.
369 +Your data will be covered by a Creative Commons license of your choice. There are a variety of licenses available, enabling you to prevent use for specific purposes, e.g. commercial use.
413 413  
414 ->Can I share my data before my paper is published?
371 +>I don't think I'm allowed to share my data
415 415  
416 416  
417 -Yes, if you do not want to share your data before publishing the results in an article, you can publish your dataset with an embargo status. This will make it possible to find information about the data without making the data itself available, and give you a citeable DOI.
374 +Many institutions are still very careful about what can be shared and how, but the situation is constantly evolving. As a researcher providing data, you will be asked to fill out an ethics compliance survey which survey to ensure that data published through the EBRAINS platform has been collected according to EU regulations. We are working on solutions for sharing anonymised human data that complies with GDPR standards to protect the identity of research subjects.
418 418  
419 ->Can I lose my competitive edge if I share my data before I publish the associated paper?
376 +>I can't share my data before my paper is published
420 420  
421 421  
422 -No, publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data.
379 +If you do not want to share your data before publishing the results in an article, you can publish your dataset with an embargo status. This will make it possible to find information about the data without making the data itself available, and give you a citeable DOI.
423 423  
381 +>If I share my data before I publish the associated paper, I will lose my competitive edge
424 424  
383 +
384 +Publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data.
385 +
386 +
425 425  ----
426 426  
427 427  == Contact ==
EBRAINS-Share-Software-4.pdf
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