Changes for page data-curation-copy

Last modified by eapapp on 2023/07/04 16:46
From version 171.1
edited by eapapp
on 2023/06/06 16:30
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To version 163.1
edited by jan
on 2023/06/06 11:24
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1 -XWiki.eapapp
1 +XWiki.jan
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18 -
19 -
20 20  == Publishing neuroscience data, models and software via EBRAINS ==
21 21  
22 22  
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27 27  {{toc depth="3" start="2"/}}
28 28  {{/box}}
29 29  
11 +
30 30  == **Information to get started** ==
31 31  
32 32  **[[REQUEST CURATION>>https://nettskjema.no/a/277393#/]] to share data, simulations, computational models, and software, - or to add a new version of an existing one. **
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34 34  Have you already published your data somewhere else? You can increase the exposure and impact of your shared dataset by also listing it on EBRAINS.
35 35  
36 36  
37 -(% class="box" style="text-align: center; font-size: 1.2em" %)
38 -(((
39 -Search existing data, models and software in the [[EBRAINS Knowledge Graph >>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]]
40 -)))
19 +(% style="text-align: center;" %)
20 +Search existing data, models and software in [[the EBRAINS Knowledge Graph Search>>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]]
41 41  
42 42  
43 43  EBRAINS accepts data from all modalities and from all species, as well as models, software, web services and metadata models (collectively referred to as research products) for sharing. You'll find detailed information about how to share each research product below. 
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75 75  
76 76  [[image:image-20230326054341-1.png]]
77 77  
78 -(% class="box floatinginfobox" id="share-data-infographic" %)
79 -(((
80 -(% style="text-align:center" %)
81 -//Download our infographic//
82 -//with all you need to know//
83 -//to share data on EBRAINS: //
84 -// //
85 -[[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
58 +==== [[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]//All you need to know to share data on EBRAINS.// ====
86 86  
87 -
88 -)))
89 89  
90 -
91 91  ==== **1. Provide some general information about your dataset** ====
92 92  
93 93  
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150 150  
151 151  Journal publications sufficiently describing the shared data, such as made available through [[Nature Scientific Data>>http://www.nature.com/sdata/about]], [[Elsevier Data in Brief>>http://www.journals.elsevier.com/data-in-brief/]], [[BMC Data note>>https://bmcresnotes.biomedcentral.com/submission-guidelines/preparing-your-manuscript/data-note]] and more, can replace the EBRAINS Data Descriptor.
152 152  
153 -(% class="box floatinginfobox" id="data-descriptor-infographic" %)
154 -(((
155 -(% style="text-align:center" %)
156 -//Download our infographic: //
157 -//The EBRAINS Data//
158 -//Descriptor at a glance//
159 -// //
160 -[[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
161 -
162 -)))
123 +==== [[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]//The EBRAINS Data descriptor at-a-glance// ====
163 163  
125 +
164 164  ==== **5. Preview and publish ** ====
165 165  
166 166  
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174 174  (% class="box floatinginfobox" %)
175 175  (((
176 176  **Human subject data that can be shared on EBRAINS:**
177 -// //
178 -// - Post-mortem data//
179 -// - Aggregated data//
180 -// - Strongly pseudonymized or de-identified subject data//
181 -// with a legal basis for sharing (e.g. Informed Consent)//
182 -// //
183 183  
184 -(% class="small" %)
185 -//If you have human data that does not qualify as any of the above,//
186 -//please [[get in touch>>https://www.ebrains.eu/contact/]] and we will clarify the available options.//
140 +- Post-mortem data
141 +- Aggregated data
142 +- Strongly pseudonymized or de-identified subject data with a legal basis for sharing (e.g. Informed Consent)
143 +
144 +(% class="small" %)//If you have human data that does not classify as any of the above, please get in touch and we will clarify the available options. //
187 187  )))
188 188  
189 189  Human subject data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
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211 211  
212 212  === Step by Step - Software ===
213 213  
172 +[[[[image:swc-flow-no-header.png||alt="swc-flow.png"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
214 214  
215 -(% class="box floatinginfobox" id="software-curation-infographic" %)
216 -(((
217 -(% style="text-align:center" %)
218 -//Software curation at a glance//
219 -// //
220 -[[[[image:Thumb2.png||alt="EBRAINS-Share-Software.pdf" height="287" width="197"]]>>attach:EBRAINS-Share-Software-4.pdf]]
221 -)))
174 +~1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions you will find the links to your software and software version entries in the Knowledge Graph.
222 222  
223 -(% style="margin-left:15px" %)[[[[image:Screenshot 2023-06-06 1122082.png||alt="swc-flow.png" height="136" width="637"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
176 +2. Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary.
224 224  
225 -1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions, you will find the links to your software and software version entries in the Knowledge Graph.
226 -1. Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary.
227 -1. After a quality check, we integrate and publish the information to the Knowledge Graph. Your software is then searchable and usable for the neuroscience community.
178 +3. After a quality check, we integrate and publish the information to the Knowledge Graph. Your software is then searchable and usable for the neuroscience community.
228 228  
229 229  If you want to add a new version to an already curated software, please request this via the [[curation request form>>https://nettskjema.no/a/277393]].
230 230  
231 -For more information, visit our [[Guide to Software Curation in the EBRAINS Knowledge Graph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] or see our infographic on the right.
182 +For more information, visit our [[Guide to Software Curation in the EBRAINS Knowledge Graph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] or see our infographic below.
232 232  
184 +[[[[image:Thumb.png||alt="EBRAINS-Share-Software.pdf" height="155" style="float:left" width="106"]]>>attach:EBRAINS-Share-Software.pdf]]
233 233  
186 +
187 +
188 +==== //Software curation at a glance// ====
189 +
190 +
191 +
192 +
234 234  ----
235 235  
236 236  == **The openMINDS metadata framework** ==
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261 261  
262 262  (% class="small" %)Curation Scientist
263 263  Neuroscience (PhD)(%%)
264 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Behavioral neuroscience and microscopy**
223 +(% class="small" style="color:#4a5568" %)**Behavioral neuroscience and microscopy**
265 265  )))|(% style="width:303px" %)(((
266 266  [[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]]
267 267  
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270 270  (% class="small" %)Curation Scientist,
271 271  Phd Student
272 272  Neuroscience (M. Sc.)(%%)
273 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and data integration**
232 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and data integration**
274 274  )))|(% style="width:303px" %)(((
275 275  [[image:My project (1).jpg||height="209" width="167"]]
276 276  
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279 279  (% class="small" %)Curation Scientist,
280 280  Phd Student
281 281  Neuroscience (M. Sc.)(%%)
282 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and structural connectivity**
241 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and structural connectivity**
283 283  )))|(% style="width:303px" %)(((
284 284  [[image:My project1.jpg||height="209" width="167"]]
285 285  
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287 287  
288 288  (% class="small" %)Curation Scientist
289 289  Neurocognitive Psychology (M. Sc.)(%%)
290 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroimaging **
249 +(% class="small" style="color:#4a5568" %)**Neuroimaging **
291 291  )))
292 292  
293 293  |(% style="width:303px" %)(((
... ... @@ -298,7 +298,7 @@
298 298  (% class="small" %)Curation Scientist,
299 299  Phd Student
300 300  Neuroscience (M. Sc.)(%%)
301 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and brain atlases**
260 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and brain atlases**
302 302  )))| | |
303 303  
304 304  
... ... @@ -312,8 +312,8 @@
312 312  (% class="small" %)Curation Scientist,
313 313  Phd Student
314 314  Sensors and Cognitive Psychology (M. Sc.)(%%)
315 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Human-Computer Interaction**
316 -)))|(% style="width:328px" %)(((
274 +(% class="small" style="color:#4a5568" %)**Human-Computer Interaction**
275 +)))|(% style="width:303px" %)(((
317 317  
318 318  
319 319  
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321 321  
322 322  
323 323  
283 +
284 +
285 +
286 +
287 +
324 324  **Lyuba Zehl**
325 325  
326 326  (% class="small" %)Knowledge Systems Engineer
327 327  Dr. rer. nat. (Systems Neuroscience)(%%)
328 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
329 -)))|(% style="width:321px" %) |(% style="width:324px" %)
292 +(% class="small" style="color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
293 +)))|(% style="width:303px" %) |
330 330  
331 331  ----
332 332  
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360 360  ==== **Add a tutorial or learning resource ** ====
361 361  
362 362  (% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %)
363 -(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
327 +(% style="color:#000000" %)//More information will follow//
364 364  
365 365  
366 366  ==== **Create a workflow** ====
367 367  
368 368  (% class="wikigeneratedid" id="H-Workflows5Binformation5D" %)
369 -(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
333 +(% style="color:#000000" %)//More information will follow//
370 370  
371 371  ----
372 372  
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385 385  === **Frequently asked questions ** ===
386 386  
387 387  (((
388 -==== ====
352 +==== ====
389 389  
390 390  (((
391 ->Is the curation process time consuming and difficult?
355 +>The curation process is time consuming and difficult
392 392  )))
393 393  )))
394 394  
395 -
396 396  (% class="wikigeneratedid" id="HHowcanIshareA0models3F" %)
397 -No, if communication is on a regular basis, we are able to finish curation within two weeks. Publishing your data naturally takes some effort but we will support you as much as possible.
360 +Publishing your data naturally takes some time and effort but we will support you as much as possible. If communication is on a regular basis, we are able to finish basic curation - from the initial contact to dataset release - within two weeks.
398 398  
399 ->Is sharing my data also beneficial for me or only for others?
362 +>Sharing my data is not beneficial for me - only for others
400 400  
401 401  
402 402  When you publish your data via EBRAINS, we provide comprehensive data management support and safe long term storage - all free of charge. Additionally, your data can be cited, just like a scientific journal article. Sharing your data may even lead to new funding opportunities. Many funders specifically support projects that are part of the “Open Science” initiative.
403 403  
404 ->Can my data be too insignificant to share?
367 +>My data is too insignificant to share
405 405  
406 406  
407 -No, there is no such thing as insignificant data. Data that is considered insignificant for a given topic, may have great significance for another. By making “insignificant” data publicly available, other researchers may find something interesting that was off-topic for your own purposes.
370 +There is no such thing as insignificant data. Data that is considered insignificant for a given topic, may have great significance for another. By making “insignificant” data publicly available, other researchers may find something interesting that was off-topic for your own purposes.
408 408  
409 ->Can my data be easily misused if I share it?
372 +>My data can easily be misused if I share it with the world
410 410  
411 411  
412 -No, your data will be covered by a Creative Commons license of your choice. There are a variety of licenses available, enabling you to prevent use for specific purposes, e.g. commercial use.
375 +Your data will be covered by a Creative Commons license of your choice. There are a variety of licenses available, enabling you to prevent use for specific purposes, e.g. commercial use.
413 413  
414 ->Can I share my data before my paper is published?
377 +>I don't think I'm allowed to share my data
415 415  
416 416  
417 -Yes, if you do not want to share your data before publishing the results in an article, you can publish your dataset with an embargo status. This will make it possible to find information about the data without making the data itself available, and give you a citeable DOI.
380 +Many institutions are still very careful about what can be shared and how, but the situation is constantly evolving. As a researcher providing data, you will be asked to fill out an ethics compliance survey which survey to ensure that data published through the EBRAINS platform has been collected according to EU regulations. We are working on solutions for sharing anonymised human data that complies with GDPR standards to protect the identity of research subjects.
418 418  
419 ->Can I lose my competitive edge if I share my data before I publish the associated paper?
382 +>I can't share my data before my paper is published
420 420  
421 421  
422 -No, publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data.
385 +If you do not want to share your data before publishing the results in an article, you can publish your dataset with an embargo status. This will make it possible to find information about the data without making the data itself available, and give you a citeable DOI.
423 423  
387 +>If I share my data before I publish the associated paper, I will lose my competitive edge
424 424  
389 +
390 +Publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data.
391 +
392 +
425 425  ----
426 426  
427 427  == Contact ==
EBRAINS-Share-Software-4.pdf
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1 -XWiki.jan
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