Summary

• Page properties (2 modified, 0 added, 0 removed)
• Attachments (0 modified, 4 added, 0 removed)
  • 3Datlas_screenshot.PNG
  • LZ_screenshot.PNG
  • LivePaper_screenshot.PNG
  • MIO_screenshot.PNG

Details

Page properties

Author

...	...	@@ -1,1 +1,1 @@
1		-XWiki.spieschnik
	1	+XWiki.eapapp

Content

...	...	@@ -348,24 +348,14 @@
348	348
349	349	=== **Showcase shared data, models or software in other services** ===
350	350
351		-Below is a list of additional services that data, models or software shared via EBRAINS can benefit from. EBRAINS is continuously looking to increase the number of interoperable services.
	351	+Below is a list of additional services that data, models or software shared via EBRAINS can benefit from. EBRAINS is continuously looking to increase the number of interoperable services.
352	352
353		-**Viewer for 2D images **
	353	+(% cellpadding="15" style="margin-right:auto" %)
	354	+|(% colspan="2" %)**Viewer for 2D images**|(% colspan="2" rowspan="1" style="white-space:nowrap; width:265px" %)**Viewer for sequential atlas-registered 2D images with annotation options**
	355	+|(% style="white-space:nowrap; width:320px" %)[[image:MIO_screenshot.PNG||alt="MIO viewer" height="202" style="float:left" width="250"]]|(% style="width:450px" %)Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].|(% style="white-space:nowrap; width:283px" %)**[[image:LZ_screenshot.PNG||alt="LocaliZoom viewer" height="208" style="float:left" width="250"]]**|(% style="width:435px" %)Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].
	356	+|(% colspan="2" rowspan="1" %)**Use your research product in an interactive publication**|(% colspan="2" rowspan="1" style="white-space:nowrap; width:265px" %)**Interactive 3D atlas viewer with options for data visualization**
	357	+|[[image:LivePaper_screenshot.PNG||alt="LivePaper" height="284" style="float:left" width="250"]]|Add your data, models or software to a// Live paper. //Read more about [[Live papers on ebrains.eu>>https://www.ebrains.eu/data/live-papers/live-papers]].|(% style="width:283px" %)[[image:3Datlas_screenshot.PNG||alt="Siibra explorer" height="170" style="float:left" width="250"]]|(% style="width:435px" %)Upload your data to the //Siibra-explorer//: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to register your data to atlases, read about the [[Atlas services on ebrains.eu>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]].
354	354
355		-* Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].
356		-
357		-**Viewer for sequential atlas-registered 2D images with annotation options**
358		-
359		-* Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].
360		-
361		-**Use your research product in an interactive publication **
362		-
363		-* Add your data, models or software to a// Live paper. //Read more about [[Live papers on ebrains.eu>>https://www.ebrains.eu/data/live-papers/live-papers]].
364		-
365		-**Interactive 3D atlas viewer with options for data visualization**
366		-
367		-* Upload your data to //the Siibra//-explorer: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to register your data to atlases, read about the [[Atlas services on ebrains.eu>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]].
368		-
369	369	----
370	370
371	371	==== **Add a tutorial or learning resource ** ====
...	...	@@ -409,22 +409,18 @@
409	409
410	410	When you publish your data via EBRAINS, we provide comprehensive data management support and safe long term storage - all free of charge. Additionally, your data can be cited, just like a scientific journal article. Sharing your data may even lead to new funding opportunities. Many funders specifically support projects that are part of the “Open Science” initiative.
411	411
412		-
413	413	>Can my data be too insignificant to share?
414	414
415	415	No, there is no such thing as insignificant data. Data that is considered insignificant for a given topic, may have great significance for another. By making “insignificant” data publicly available, other researchers may find something interesting that was off-topic for your own purposes.
416	416
417		-
418	418	>Can my data be easily misused if I share it?
419	419
420	420	No, your data will be covered by a Creative Commons license of your choice. There are a variety of licenses available, enabling you to prevent use for specific purposes, e.g. commercial use.
421	421
422		-
423	423	>Can I share my data before my paper is published?
424	424
425	425	Yes, if you do not want to share your data before publishing the results in an article, you can publish your dataset with an embargo status. This will make it possible to find information about the data without making the data itself available, and give you a citeable DOI.
426	426
427		-
428	428	>Can I lose my competitive edge if I share my data before I publish the associated paper?
429	429
430	430	No, publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data.

3Datlas_screenshot.PNG

Author

...	...	@@ -1,0 +1,1 @@
	1	+XWiki.eapapp

Size

...	...	@@ -1,0 +1,1 @@
	1	+410.7 KB

Content

LZ_screenshot.PNG

Author

...	...	@@ -1,0 +1,1 @@
	1	+XWiki.eapapp

Size

...	...	@@ -1,0 +1,1 @@
	1	+1.8 MB

Content

LivePaper_screenshot.PNG

Author

...	...	@@ -1,0 +1,1 @@
	1	+XWiki.eapapp

Size

...	...	@@ -1,0 +1,1 @@
	1	+120.9 KB

Content

MIO_screenshot.PNG

Author

...	...	@@ -1,0 +1,1 @@
	1	+XWiki.eapapp

Size

...	...	@@ -1,0 +1,1 @@
	1	+607.0 KB

Content