Changes for page data-curation-copy
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... ... @@ -330,8 +330,6 @@ 330 330 331 331 332 332 333 - 334 - 335 335 **Lyuba Zehl** 336 336 337 337 (% class="small" %)Knowledge Systems Engineer ... ... @@ -348,14 +348,24 @@ 348 348 349 349 === **Showcase shared data, models or software in other services** === 350 350 351 -Below is a list of additional services that data, models or software shared via EBRAINS can benefit from. EBRAINS is continuously looking to increase the number of interoperable services. 349 +Below is a list of additional services that data, models or software shared via EBRAINS can benefit from. EBRAINS is continuously looking to increase the number of interoperable services. 352 352 353 -(% cellpadding="15" style="margin-right:auto" %) 354 -|(% colspan="2" %)**Viewer for 2D images**|(% colspan="2" rowspan="1" %)**Viewer for sequential atlas-registered 2D images with annotation options** 355 -|(% style="white-space:nowrap; width:320px" %)[[image:MIO_screenshot.PNG||alt="MIO viewer" height="242" style="float:left" width="300"]]|Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].|(% style="white-space:nowrap; width:320px" %)**[[image:LZ_screenshot.PNG||alt="LocaliZoom viewer" height="250" style="float:left" width="300"]]**|Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]]. 356 -|(% colspan="2" rowspan="1" %)**Use your research product in an interactive publication**|(% colspan="2" rowspan="1" %)**Interactive 3D atlas viewer with options for data visualization** 357 -|[[image:LivePaper_screenshot.PNG||alt="LivePaper" height="341" style="float:left" width="300"]]|Add your data, models or software to a// Live paper. //Read more about [[Live papers on ebrains.eu>>https://www.ebrains.eu/data/live-papers/live-papers]].|[[image:3Datlas_screenshot.PNG||alt="Siibra explorer" height="204" style="float:left" width="300"]]|Upload your data to //the Siibra//-explorer: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to register your data to atlases, read about the [[Atlas services on ebrains.eu>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]]. 351 +**Viewer for 2D images ** 358 358 353 +* Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]]. 354 + 355 +**Viewer for sequential atlas-registered 2D images with annotation options** 356 + 357 +* Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]]. 358 + 359 +**Use your research product in an interactive publication ** 360 + 361 +* Add your data, models or software to a// Live paper. //Read more about [[Live papers on ebrains.eu>>https://www.ebrains.eu/data/live-papers/live-papers]]. 362 + 363 +**Interactive 3D atlas viewer with options for data visualization** 364 + 365 +* Upload your data to //the Siibra//-explorer: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to register your data to atlases, read about the [[Atlas services on ebrains.eu>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]]. 366 + 359 359 ---- 360 360 361 361 ==== **Add a tutorial or learning resource ** ==== ... ... @@ -393,26 +393,33 @@ 393 393 ))) 394 394 ))) 395 395 404 + 405 +(% class="wikigeneratedid" id="HHowcanIshareA0models3F" %) 396 396 No, if communication is on a regular basis, we are able to finish curation within two weeks. Publishing your data naturally takes some effort but we will support you as much as possible. 397 397 398 398 >Is sharing my data also beneficial for me or only for others? 399 399 410 + 400 400 When you publish your data via EBRAINS, we provide comprehensive data management support and safe long term storage - all free of charge. Additionally, your data can be cited, just like a scientific journal article. Sharing your data may even lead to new funding opportunities. Many funders specifically support projects that are part of the “Open Science” initiative. 401 401 402 402 >Can my data be too insignificant to share? 403 403 415 + 404 404 No, there is no such thing as insignificant data. Data that is considered insignificant for a given topic, may have great significance for another. By making “insignificant” data publicly available, other researchers may find something interesting that was off-topic for your own purposes. 405 405 406 406 >Can my data be easily misused if I share it? 407 407 420 + 408 408 No, your data will be covered by a Creative Commons license of your choice. There are a variety of licenses available, enabling you to prevent use for specific purposes, e.g. commercial use. 409 409 410 410 >Can I share my data before my paper is published? 411 411 425 + 412 412 Yes, if you do not want to share your data before publishing the results in an article, you can publish your dataset with an embargo status. This will make it possible to find information about the data without making the data itself available, and give you a citeable DOI. 413 413 414 414 >Can I lose my competitive edge if I share my data before I publish the associated paper? 415 415 430 + 416 416 No, publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data. 417 417 418 418
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