Changes for page data-curation-copy

Last modified by eapapp on 2023/07/04 16:46

From version 194.1
edited by ingrreit
on 2023/06/14 09:01
Change comment: There is no comment for this version
To version 195.1
edited by adavison
on 2023/06/14 15:35
Change comment: There is no comment for this version

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211 211  === Step by Step - Models ===
212 212  
213 213  
214 -~1. Request curation using the [[Curation request form>>https://nettskjema.no/a/277393#/]]. You will be contacted by a curator with more information.
215 215  
216 216  
217 -//Additional information will be added soon.//
216 +==== 1. Start early ====
218 218  
218 +It is not necessary to wait until you are ready to publish to register your model with EBRAINS.
219 +
220 +By registering a model early in your project, you can take advantage of EBRAINS tools
221 +to keep track of simulations and to share them with your collaborators.
222 +
223 +==== 2. Create/choose a Collab workspace ====
224 +
225 +We use EBRAINS Collaboratory "collab" workspaces to help manage the model curation process.
226 +
227 +In particular, we use collab membership (the "Team") to control who can view or edit your model metadata prior to publication.
228 +
229 +It is up to you whether you create a new collab for each model, or reuse an existing collab
230 +(it is no problem to have multiple models associated with a single collab).
231 +
232 +Collabs are also useful for storing simulation results, adding documentation for your model,
233 +and/or providing tutorials in Jupyter notebooks.
234 +
235 +==== 3. Upload code ====
236 +
237 +We recommend storing model code and/or configuration files in an online Git repository, for example on GitHub.
238 +This repository should be public when you publish the model, but a private repository can be used for model development.
239 +
240 +Alternatively, you can upload code to the Collab Drive or Bucket storage.
241 +
242 +==== 4.Submit metadata ====
243 +
244 +We recommend submitting metadata using the Model Catalog app, installed in your collab.
245 +
246 +To install it:
247 +
248 +1. click the "+ Create" button
249 +1. in the "Create Page" form, add a title, such as "Model Catalog", and select "Community App", then click "Create"
250 +1. scroll down until you find the "Model Catalog" app, click "Select", then "Save & View"
251 +
252 +You will then see a table of all the models and validation tests associated with this collab.
253 +If this is your first time using the app, the table will probably be empty.
254 +To add your model, click "+", fill in the form, then click "Add model".
255 +
256 +As development of your model proceeds, you can easily register new versions of the code,
257 +and new parameterizations by clicking "Add new version".
258 +
259 +If you prefer not to use the app, you can instead fill in the [[Curation request form>>https://nettskjema.no/a/277393#/]].,
260 +and you will be contacted by e-mail with further instructions.
261 +
262 +====
263 +5. Provide a reference dataset ====
264 +
265 +Once you're ready to publish your model entry in the EBRAINS Knowledge Graph,
266 +we encourage you to provide a dataset containing the simulation results produced by your model,
267 +following the process under "Step by step - Data" above.
268 +
269 +These reference data will be linked to the model, and will be helpful to anyone trying to
270 +reuse your model.
271 +
272 +We will soon introduce a "Reproducible" badge for all models that include a reference dataset,
273 +and whose simulation results can be reproduced by an EBRAINS curator.
274 +
275 +==== 6. Request publication, preview and publish ====
276 +
277 +Until you request your model entry to be published in the EBRAINS Knowledge Graph,
278 +only members of the collab will be able to view the model entry, in the Model Catalog app
279 +or using the Model Validation Python client.
280 +
281 +After publication, the model will appear in the [[EBRAINS public search results>>https://search.kg.ebrains.eu/?category=Model||rel=" noopener noreferrer" target="_blank"]], and will receive a DOI.
282 +
283 +To request publication, [[contact EBRAINS support>>https://ebrains.eu/support||rel=" noopener noreferrer" target="_blank"]], providing the collab name and the model name or ID.
284 +
285 +
286 +Curators will then perform a number of checks:
287 +
288 +1. Does the model description provide sufficient context to understand the purpose and use of the model?
289 +1. Does the code repository contain a licence file, explaining the conditions for reusing the code?
290 +1. Does the model have a clearly defined version identifier (e.g. v1.0). For models in a Git repository, the version identifier should match the name of a tag or release.
291 +
292 +The curators will also take a snapshot of your model code.
293 +
294 +* For models in public Git repositories, we archive a copy of the repository in Software Heritage.
295 +* For models in a collab Bucket or Drive, we make a read-only copy of the code in a public container in the EBRAINS repository.
296 +
297 +Once this is done, you will be invited to review a preview of how the model entry will appear in the KG Search,
298 +and will have the opportunity to request modifications prior to approval and publication.
299 +
219 219  ----
220 220  
221 221  === Step by Step - Software ===