Attention: The EBRAINS drive will be unavailable for most of the weekend starting the 25th October. Although the Lab is availble while the Drive is down, files that are stored in the Drive will not be loaded and you will be unable to save documents directly on the Lab.


Changes for page data-curation-copy

Last modified by eapapp on 2023/07/04 16:46
From version 195.2
edited by adavison
on 2023/06/14 15:36
Change comment: There is no comment for this version
To version 201.1
edited by ingrreit
on 2023/06/26 13:34
Change comment: There is no comment for this version

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1 -XWiki.adavison
1 +XWiki.ingrreit
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17 17  {{/html}}
18 18  
19 19  
20 -== Publishing neuroscience data, models and software via EBRAINS ==
20 +(% class="wikigeneratedid" id="HPublishingneurosciencedata2CmodelsandsoftwareviaEBRAINS" %)
21 +(% style="font-size:2em" %)**Publishing neuroscience data, models and software via EBRAINS**
21 21  
22 -
23 23  (% class="wikigeneratedid" %)
24 24  The aim of this collab is to provide you with detailed information about publishing data, simulations, computational models, and software via EBRAINS. If you want a quick overview of the sharing process, see [[https:~~/~~/ebrains.eu/service/share-data>>https://ebrains.eu/service/share-data]].
25 25  
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83 83  //to share data on EBRAINS: //
84 84  // //
85 85  [[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
86 -
87 -
88 88  )))
89 89  
90 90  
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106 106  
107 107  ==== **2. Upload data ** ====
108 108  
107 +(% class="box floatinginfobox" id="share-data-infographic" %)
108 +(((
109 +(% style="text-align:center" %)
110 +//Download our infographic//
111 +//with guidelines
112 +on data organization: //
109 109  
114 +(% style="text-align:center" %)
115 +[[[[image:image-20230621121014-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/lib/f5cf4964-f095-49bd-8c34-e4ffda05a497/file/ebrains-infographic-data-organisation.pdf/]]
116 +)))
117 +
110 110  (% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/sieKO-kW8O18iPaUyonwyo4UfHBmtc2E9BDnjbx52j6J_uGmm-OzGAo7sloMk3sYwKa6QW3hYQsOA9N4H7uGQpca088Wrk0Nurpt_J3B0-NSbcaPNdZIh21otQcG6jnAxLGiKoEvkTyaDGTMk3fu7me8mQ=s2048||height="94px;" width="94px;"]](%%)**Ensure data is structured consistently prior to upload. **
111 111  
112 -We look for organized data, not organized according to our standard. This is to support the broadest degree of sharing possible. We do however require that the data is organized in a consistent and precise manner. Please see our// //[[collection of guidelines on data organization>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] for further guidance.
120 +We look for organized data, not organized according to our standard. This is to support the broadest degree of sharing possible. We do however require that the data is organized in a consistent and precise manner. Please see our// //[[guidelines on data organization>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] for further guidance.
113 113  
114 114  (% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/EWtYwfVlbeC-jqPasgmzidqc50GrkKIEgwXeUeql8aaMHIukmFdWEy0nufVWWATbxDDK3XwwZEDmASrbpCsBk1u0HpAd8x4ZgAMsMPRcWyrb9etlV6FgKE_QN2e6SqKxHE0rzkR8uI1rRW_5z21TFGYVnw=s2048||height="91px;" width="91px;"]](%%)**Upload data to EBRAINS Storage, either using a drag-and-drop solution (opt. 1) or an interactive python script (opt. 2).**
115 115  
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157 157  (% class="box floatinginfobox" id="data-descriptor-infographic" %)
158 158  (((
159 159  (% style="text-align:center" %)
160 -//Download our infographic: //
161 -//The EBRAINS Data//
162 -//Descriptor at a glance//
168 +//Download our infographic
169 +about the EBRAINS Data//
170 +//Descriptor//
163 163  // //
164 164  [[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
165 -
166 166  )))
167 167  
168 168  ==== **5. Preview and publish** ====
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252 252  To add your model, click "+", fill in the form, then click "Add model".
253 253  
254 254  As development of your model proceeds, you can easily register new versions of the code,
255 -and new parameterizations by clicking "Add new version".
262 +and new parameterizations, by clicking "Add new version".
256 256  
257 257  If you prefer not to use the app, you can instead fill in the [[Curation request form>>https://nettskjema.no/a/277393#/]].,
258 258  and you will be contacted by e-mail with further instructions.
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284 284  
285 285  1. Does the model description provide sufficient context to understand the purpose and use of the model?
286 286  1. Does the code repository contain a licence file, explaining the conditions for reusing the code?
287 -1. Does the model have a clearly defined version identifier (e.g. v1.0). For models in a Git repository, the version identifier should match the name of a tag or release.
294 +1. Does the model have a clearly defined version identifier (e.g. v1.0)? For models in a Git repository, the version identifier should match the name of a tag or release.
288 288  
289 289  The curators will also take a snapshot of your model code.
290 290  
291 -* For models in public Git repositories, we archive a copy of the repository in Software Heritage.
298 +* For models in public Git repositories, we archive a copy of the repository in [[Software Heritage>>https://www.softwareheritage.org/||rel="noopener noreferrer" target="_blank"]].
292 292  * For models in a collab Bucket or Drive, we make a read-only copy of the code in a public container in the EBRAINS repository.
293 293  
294 294  Once this is done, you will be invited to review a preview of how the model entry will appear in the KG Search,
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405 405  Phd Student
406 406  Sensors and Cognitive Psychology (M. Sc.)(%%)
407 407  (% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Human-Computer Interaction**
408 -)))|(% style="width:328px" %)(((
409 -
415 +)))|(% style="width:303px" %)(((
416 +[[image:Lyuba.jpg||height="209" width="167"]]
410 410  
411 -
412 -
413 -
414 -
415 -
416 -
417 -
418 418  **Lyuba Zehl**
419 419  
420 420  (% class="small" %)Knowledge Systems Engineer
421 421  Dr. rer. nat. (Systems Neuroscience)(%%)
422 422  (% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
423 -)))|(% style="width:321px" %) |(% style="width:324px" %)
423 +)))|(% style="width:303px" %) |(% style="width:303px" %)
424 424  
425 425  ----
426 426  
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