Changes for page data-curation-copy
Last modified by eapapp on 2023/07/04 16:46
From version 206.1
edited by ingrreit
on 2023/07/04 15:46
on 2023/07/04 15:46
Change comment:
There is no comment for this version
To version 54.1
edited by spieschnik
on 2023/04/25 15:36
on 2023/04/25 15:36
Change comment:
There is no comment for this version
Summary
-
Page properties (2 modified, 0 added, 0 removed)
-
Attachments (0 modified, 0 added, 24 removed)
- 3Datlas_screenshot.PNG
- 69399800_399857187337623_8446982631391756288_n.jpg
- Camilla.jpg
- EBRAINS-Share-Software-4.pdf
- EBRAINS-Share-Software.pdf
- Image-1.jpg
- LZ_screenshot.PNG
- LivePaper_screenshot.PNG
- Lyuba.jpg
- MIO_screenshot.PNG
- My project (1).jpg
- My project (2).jpg
- My project.jpg
- My project1.jpg
- My project2.jpg
- Screenshot 2023-06-06 112208.png
- Screenshot 2023-06-06 1122082.png
- Thumb.png
- Thumb2.png
- ansattfoto2.jpg
- csm_Jan_Gruendling_3_bf9567ebb1.jpg
- image-20230621121014-1.png
- swc-flow-no-header.png
- swc-flow.png
-
Objects (0 modified, 0 added, 1 removed)
Details
- Page properties
-
- Author
-
... ... @@ -1,1 +1,1 @@ 1 -XWiki.i ngrreit1 +XWiki.spieschnik - Content
-
... ... @@ -1,58 +1,22 @@ 1 -{{html clean="false"}} 2 -<div style="float:right;margin-left:1em;margin-bottom:1em"> 3 - <form title="Search in this collab" target="_blank" action="https://wiki.ebrains.eu/bin/view/Main/Search"> 4 - <input type="hidden" name="sort" value="score"> 5 - <input type="hidden" name="sortOrder" value="desc"> 6 - <input type="hidden" name="highlight" value="true"> 7 - <input type="hidden" name="facet" value="true"> 8 - <input type="hidden" name="r" value="1"> 9 - <input type="hidden" name="f_locale" value="en"> 10 - <input type="hidden" name="f_space_facet" value="1/Collabs.test-ir2."> 11 - <input type="hidden" name="l_space_facet" value="100"> 12 - <input type="hidden" name="f_type" value="DOCUMENT"> 13 - <input type="text" name="text" placeholder="Search here..." size="25" id="searchbox" /> 14 - <input type="submit" value="🔎︎" id="submit"/> 15 - </form> 16 -</div> 17 -{{/html}} 1 +== Publishing neuroscience data, models and software via EBRAINS == 18 18 3 +The aim of this collab is to provide you with all the information you need to publish your experimental data, simulations, computational models, and software via EBRAINS. Have you already published your data somewhere else? You can increase the exposure and impact of your shared dataset by also listing it on EBRAINS. 19 19 20 -(% class="wikigeneratedid" id="HPublishingneurosciencedata2CmodelsandsoftwareviaEBRAINS" %) 21 -(% style="font-size:2em" %)**Publishing neuroscience data, models and software via EBRAINS** 22 - 23 -(% class="wikigeneratedid" %) 24 -The aim of this collab is to provide you with detailed information about publishing data, simulations, computational models, and software via EBRAINS. If you want a quick overview of the sharing process, see [[https:~~/~~/ebrains.eu/service/share-data>>https://ebrains.eu/service/share-data]]. 25 - 26 26 {{box title="**Contents**"}} 27 27 {{toc depth="3" start="2"/}} 28 28 {{/box}} 29 29 30 -== **Information to get started** == 31 31 32 -**[[REQUEST CURATION>>https://nettskjema.no/a/277393#/]] to share data, simulations, computational models, and software, - or to add a new version of an existing one. ** 10 +(% style="text-align: center;" %) 11 +**Get started! ** 33 33 34 -Have you already published your data somewhere else? You can increase the exposure and impact of your shared dataset by also listing it on EBRAINS. 13 +(% style="text-align: center;" %) 14 +**[[REQUEST CURATION>>https://nettskjema.no/a/277393#/]] ** 35 35 16 +(% style="text-align: center;" %) 17 + Search existing data, models and software in [[the EBRAINS Knowledge Graph Search>>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]] 36 36 37 -(% class="box" style="text-align: center; font-size: 1.2em" %) 38 -((( 39 -Search existing data, models and software in the [[EBRAINS Knowledge Graph>>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]] 40 -))) 41 41 42 - 43 -EBRAINS accepts data from all modalities and from all species, as well as models, software, web services and metadata models (collectively referred to as research products) for sharing. You'll find detailed information about how to share each research product below. 44 - 45 - 46 -(% class="box infomessage" %) 47 -((( 48 -We strongly recommend to **start preparing for data sharing as early as possible**. With a structured data repository and adequate notes on how the data was acquired, you greatly minimize the effort required to publish your data. The time it takes to share data on EBRAINS heavily depends on on the engagement from the researcher and how well the data and metadata is prepared before-hand. Contact us for personalised guidance on how to prepare for sharing. 49 -))) 50 - 51 -(% class="box successmessage" %) 52 -((( 53 -**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases. Reach us at [[curation-support@ebrains.eu>>mailto:curation-support@ebrains.eu]] 54 -))) 55 - 56 56 ---- 57 57 58 58 == **The EBRAINS curation process** == ... ... @@ -63,123 +63,106 @@ 63 63 64 64 Behind this process is the EBRAINS Curation team. Our mandate is to support you in sharing your data in line with the [[**FAIR principles**>>https://www.go-fair.org/fair-principles/]], whether you choose to describe only the key aspects of your data, or can invest in adding more detailed metadata. 65 65 66 - Curateddata, models and software are made available in [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] andthe[[KnowledgeGraph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and softwareare integratedin the EBRAINS Knowledge Graph by interoperablemetadata schemas defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]].Dataand models are linked to and discoverable via the species-specific [[EBRAINS siibra atlas viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]].30 +=== About the curation team === 67 67 68 - The curation of data,modelsand softwareisdifferent. Thus,below we explain theprocess for sharingfor eachresearch productseparately.32 +[[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]] 69 69 34 +**Sophia Pieschnik** 35 +(% class="small" %)Biology (B.Sc.) 36 +Neurocognitive Psychology (M.Sc.) 70 70 71 ----- 72 72 73 -=== Step by step - Data === 39 +(% class="box successmessage" %) 40 +((( 41 +**Particular needs? Contact us! **The process of sharing data can be modified to fit the needs of researchers and large-scale projects. Contact us if you have such requests and we'll be happy to work with you to find a solution that suits us both. 42 +))) 74 74 75 - 76 -[[image:image-20230326054341-1.png]] 77 - 78 -(% class="box floatinginfobox" id="share-data-infographic" %) 44 +(% class="box floatinginfobox" %) 79 79 ((( 80 -(% style="text-align:center" %) 81 -//Download our infographic// 82 -//with all you need to know// 83 -//to share data on EBRAINS: // 84 -// // 85 -[[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]] 46 +**We strongly recommend to start preparing for data sharing as early as possible.** With a structured data repository and adequate notes on how the data was acquired, you greatly minimize the effort required to publish your data. The time it takes to share data on EBRAINS heavily depends on on the engagement from the researcher and how well the data and metadata is prepared before-hand. **[[Contact us for personalised guidance on how to prepare for sharing>>mailto:curation-support@ebrains.eu]]. ** 86 86 ))) 87 87 88 88 89 -==== **1. Provide some general information about your dataset** ==== 90 90 91 91 92 92 93 - (%style="margin-right:10px"%)[[image:https://lh3.googleusercontent.com/zh7TvO6w04YGW9jIhfhmdT6CexdGs-AWOLfJXKRq7-tdHOu6ar1rOQx8o4rZevrjXqgPZ7-Ejv4b6X9XpgXuHpdUXi-mBTHIUnv5Vz-DktHt0sP-PZ3gE8XgZid3TV3swV1uTCBhHx11ge0pjP7RVxswGQ=s2048||height="85px;"width="91px;"]](%%)**Fill in the[[Curation requestform>>https://nettskjema.no/a/277393#/]].**53 +We promote sharing of experimental data, models, software, web services, metadata models, 94 94 95 -This form collects preliminary information about your data, allowing us to assess whether the dataset fits within the scope of EBRAINS. The submission generates a curation ID allowing us to track the case. 96 96 56 +---- 97 97 98 - (%style="margin-right:10px"%)[[image:https://lh6.googleusercontent.com/yw442oS6BwZOlY-_0BoVxyCW3DrdcJ5ogCes92iOD16_rgNEVk56aNMDaVWXFfBLYv24bHzmGgBF9wg0szjH70xzuRTqxoQAeuy3knNO7axCHoyZDXwtyTcMgFnYwbOYxOT29LK-zchrUKLW6Mle93kOkQ=s2048||height="94px;"width="94px;"]](%%)**Fill in the [[Ethicsand Regulatory complianceform>>https://nettskjema.no/a/224765]]**.58 +=== Step by step - Experimental data === 99 99 100 -This form collects the necessary information needed for us to evaluate whether we can ethically and legally share the data via EBRAINS. 101 101 102 - See below forinformation about the ethical and legal aspects concerning sharing of human subject data.61 +[[image:image-20230326054341-1.png]] 103 103 63 +==== ==== 104 104 105 -==== ** 2.Uploaddata65 +==== **1. Provide some general information about your dataset** ==== 106 106 107 -(% class="box floatinginfobox" id="share-data-infographic" %) 108 -((( 109 -(% style="text-align:center" %) 110 -//Download our infographic// 111 -//with guidelines 112 -on data organization: // 67 +The [[Curation request form>>https://nettskjema.no/a/277393#/]] collects preliminary information about your data, allowing us to assess whether the dataset fits within the scope of EBRAINS. The submission generates a curation ID allowing us to track the case. 113 113 114 -(% style="text-align:center" %) 115 -[[[[image:image-20230621121014-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/lib/f5cf4964-f095-49bd-8c34-e4ffda05a497/file/ebrains-infographic-data-organisation.pdf/]] 116 -))) 69 +The [[Ethics and Regulatory compliance form>>https://nettskjema.no/a/224765]] collects the necessary information needed for us to evaluate whether we can safely and legally share the data on the EBRAINS platforms. 117 117 118 -(% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/sieKO-kW8O18iPaUyonwyo4UfHBmtc2E9BDnjbx52j6J_uGmm-OzGAo7sloMk3sYwKa6QW3hYQsOA9N4H7uGQpca088Wrk0Nurpt_J3B0-NSbcaPNdZIh21otQcG6jnAxLGiKoEvkTyaDGTMk3fu7me8mQ=s2048||height="94px;" width="94px;"]](%%)**Ensure data is structured consistently prior to upload. ** 119 119 120 - Welook for organized data, not organized according to our standard.This is to support the broadest degree of sharing possible. We dohowever require that thedatais organizedinaconsistentandprecisemanner. Please see our// //[[guidelines on data organization>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] for further guidance.72 +==== **2. Upload data ** ==== 121 121 122 - (%style="margin-right:10px"%)[[image:https://lh5.googleusercontent.com/EWtYwfVlbeC-jqPasgmzidqc50GrkKIEgwXeUeql8aaMHIukmFdWEy0nufVWWATbxDDK3XwwZEDmASrbpCsBk1u0HpAd8x4ZgAMsMPRcWyrb9etlV6FgKE_QN2e6SqKxHE0rzkR8uI1rRW_5z21TFGYVnw=s2048||height="91px;"width="91px;"]](%%)**Uploaddata toEBRAINS Storage,eitherusing adrag-and-dropsolution(opt.1)or annteractive python script(opt.2).**74 +EBRAINS offers secure, long-term storage at [[CSCS Swiss National Supercomputing Centre>>url:https://www.cscs.ch/]], with currently no upper limit of storage capacity. The data must be consistently structured prior to upload. 123 123 124 - **Opt. 1. **For smaller datasets with a reasonable amount of files, we recommend using the Collab-Bucket solution (drag-and-drop). A Collab Bucket must first be assigned to a dataset, which happens when a datasets is accepted for sharing.76 +For smaller datasets with a reasonable amount of files, we recommend using the Collab-Bucket solution (drag-and-drop). A Collab Bucket must first be assigned to a dataset, which happens when a datasets is accepted for sharing. 125 125 126 - **Opt. 2. **For larger datasets or datasets with a large amount of files, we recommend using a programmatic approach. The [[python script>>https://github.com/eapapp/ebrains-data-storage/tree/main/data-proxy]] is interactive and does not require any additional programming.78 +For larger datasets or datasets with a large amount of files, we recommend using a programmatic approach. The [[python script>>https://github.com/eapapp/ebrains-data-storage/tree/main/data-proxy]] is interactive and does not require any additional programming. 127 127 128 128 129 -EBRAINS offers secure, long-term storage at [[CSCS Swiss National Supercomputing Centre>>url:https://www.cscs.ch/]], with currently no upper limit of storage capacity. 130 - 131 131 If a data collection is already uploaded elsewhere, we may link to the already existing repository. 132 132 133 133 134 134 ==== **3. Submit metadata** ==== 135 135 86 +Easily submit openMINDS-compatible metadata via our [[metadata wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. This form covers all the required metadata for sharing data via EBRAINS. When you're ready to 'Submit', the metadata and all uploaded files will be sent to the Curation team. 136 136 137 - (%style="margin-right:10px"%)[[image:https://lh5.googleusercontent.com/WS4T2LhF9znWWChn3Z550agLrrb-KTWdYVsJSv0lh4cGjKbjuN1WV68WER9xkYqi1UqN7KYZz7bImYz3_TpOuTuvma7T192QUiUZoyJVPk1fj5NSDSQh_kpIeBufAOdDtsDRpPKK_P5EDPqRCTAaOTNyCw=s2048||height="91px;"width="91px;"]](%%)**Submit metadatausingthe**[[EBRAINSMetadataWizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]**(opt.1),ordirectlyviatheKnowledge Graph(opt.2) **88 +For power-users interested in exploring the full span of the openMINDS framework, please check out the [[openMINDS GitHub>>https://github.com/HumanBrainProject/openMINDS]] to learn more about how to programmatically gather your metadata. A stable version of the openMINDS package can be found on [[PyPi>>https://pypi.org/project/openMINDS/]]. We accept openMINDS metadata as JSON-LD (share these with us via curation-support@ebrains.eu). Additional documentation of openMINDS metadata submodules and schemas can be found on [[the openMINDS GitHub Wiki>>https://humanbrainproject.github.io/openMINDS/]]. 138 138 139 -**Opt. 1.** Manually submit the minimal required metadata via the [[EBRAINS Metadata Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. The minimal required metadata covers extended bibliographic information necessary to publish your dataset on EBRAINS. The submitted information, including uploaded files, will be sent to the Curation team automatically 140 140 141 - **Opt.2.**To go beyond the minimal required metadata, you can directly interact with the Knowledge Graph (KG) in your private space. Within the privatespace,you can upload metadataand interact with them, moreover you can connect your metadata to existing publicly accessible entries. Access to yourprivate space is granted upon the initiation of the curationprocess.You can access your private space via:91 +==== **4. Write a Data Descriptor ** ==== 142 142 143 -* Knowledge Graph Editor: This User Interface allows you to manually enter metadata into your KG space and validate metadata that are programmatically uploaded. The Editor contains a basic set of openMINDS metadata templates, but can be extended to the full openMINDS metadata model on request. Access is granted once the request is accepted. 144 -* [[Fairgraph>>https://fairgraph.readthedocs.io/en/stable/]]: This is the recommended software tool for programmatic interaction with the KG. It allows you to programmatically upload openMINDS compliant metadata into your KG space and interact with existing metadata. 145 -* [[KG Core Python SDK>>https://github.com/HumanBrainProject/kg-core-sdks]]: This python package gives you full freedom in interacting with he KG. It allows you to upload any JSON-LD with metadata into your private space. Note, for dataset publications in EBRAINS, the JSON-LD metadata files have to comply to openMINDS. 93 +The Data Descriptor is a document helping others interpret and reuse (and prevent misuse) of your data, and is critical to achieve a basic level of FAIR. The document will be uploaded in the repository of the data, shared as a PDF. 146 146 147 - Datasetspublished through theEBRAINS KnowledgeGraphhavetoberegisteredusing**openMINDS compliantmetadata** deliveredasJSON-LDfiles.Seethissummarytable for an overviewof[[theminimallyrequired openMINDSpropertiesforpublishing>>https://drive.ebrains.eu/lib/47995dbc-f576-4008-a76c-eefbfd818529/file/ebrains-minimum-required-metadata.xlsx]]on EBRAINS.95 +[[The template >>https://drive.ebrains.eu/f/a2e07c95b1a54090bbbc/?dl=1]]safely guides you through the process of making one. Check out previous examples in the KG Search, e.g. the Data Descriptor for a dataset containing histology images of the rat brain stained for an anterograde tracer (see [[an example>>https://doi.org/10.25493/2MX9-3XF]]). 148 148 149 149 150 - ====**4.Write a Data Descriptor**====98 +Journal publications sufficiently describing the shared data, such as made available through [[Nature Scientific Data>>http://www.nature.com/sdata/about]], [[Elsevier Data in Brief>>http://www.journals.elsevier.com/data-in-brief/]], [[BMC Data note>>https://bmcresnotes.biomedcentral.com/submission-guidelines/preparing-your-manuscript/data-note]] and more, can replace the EBRAINS Data Descriptor. 151 151 152 152 101 +==== **5. Preview and publish ** ==== 153 153 154 - (%style="margin-right:10px"%)[[image:https://lh4.googleusercontent.com/lMYEKOXzejbBydOdotWWteXQo7j363xRyntBGjcPZVEdtIU1CJYX7q1STpdr2JPZK4hpWWXk20UlkUOqDGL5kX6vnQVBSdrfUo6EGfXOwpuGq1Uygv0tTZJ0lRO6voJvg56QC2mufvjAcRXGfAKFOjtc6w=s2048||height="94px;"width="94px;"]](%%)**Write adatadescriptor byfillingin**[[thismplate>>https://drive.ebrains.eu/f/a2e07c95b1a54090bbbc/?dl=1]]**.**103 +A Curator will assemble a dataset in the EBRAINS Knowledge Graph that combines the data, metadata and data descriptor. Once ready, the data provider will receive a private URL for previewing the dataset prior to release. We need an official approval from the data custodian{{footnote}}The Data Custodian is responsible for the content and quality of the Data and metadata, and is the person to be contacted by EBRAINS CS in case of any misconduct related to the Data. It is the obligation of a Data Custodian to keep EBRAINS informed about changes in the contact information of the authors of the Datasets provided by them ([[EBRAINS Data Provision Protocol - version 1.1>>https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]]).{{/footnote}} to release the dataset. Once released, a [[DataCite DOI>>https://datacite.org/]] will be generated for the dataset. If the identical data collection has received a DOI elsewhere, we recommend re-using the already issued DOI. 155 155 156 -The Data Descriptor is a document helping others interpret and reuse (and prevent misuse) of your data, and is critical to achieve a basic level of FAIR. The document will be uploaded in the repository of the data, shared as a PDF. 157 157 158 - See our infographic about the data descriptor for inspiration or guidance.106 +---- 159 159 160 - Checkout previous examples in the KGSearch. See e.g., the data descriptorfor the dataset "[[Anterogradelylabeledxonal projections from the orbitofrontalcortexin rat>>https://doi.org/10.25493/2MX9-3XF]]".108 +==== **Sharing human data ** ==== 161 161 162 - Journalpublicationssufficientlydescribing theshareddata,suchs madeavailable through[[NatureScientificData>>http://www.nature.com/sdata/about]],[[ElsevierDatain Brief>>http://www.journals.elsevier.com/data-in-brief/]],[[BMC Data note>>https://bmcresnotes.biomedcentral.com/submission-guidelines/preparing-your-manuscript/data-note]]andmore,canreplacethe EBRAINSData Descriptor.110 +We must ensure data shared on EBRAINS comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]]. 163 163 164 - 165 -(% class="box floatinginfobox" id="data-descriptor-infographic" %) 112 +(% class="box floatinginfobox" %) 166 166 ((( 167 -(% style="text-align:center" %) 168 -//Download our infographic 169 -about the EBRAINS Data// 170 -//Descriptor// 171 -// // 172 -[[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]] 173 -))) 114 +For **Human subject data**, the data must be //either// 174 174 175 - ====**5.Previewandpublish** ====116 +- Post-mortem data 176 176 118 +- Aggregated data 177 177 178 - (% style="margin-right:10px"%)[[image:https://lh4.googleusercontent.com/XqT26Q4yWJK26cjtjhI4ToXoZZMxhT9LimG4Hk9mePxy0-KPKgpVIzcuiP5mOQowBgf2JjkrWUq2VbCmafWWZPJplEZALnFOlCZHLlQgzOx7fFwoBteyi_IlMLkPBS9vtOcdNIZ59HyLnQz4RsTQ0lUrSw=s2048||height="91px;"width="91px;"]](%%)**Previewandapprovethereleaseofyourataset. **120 +- Pseudonymized subject data with a legal basis for sharing (e.g. Informed Consent) 179 179 180 -Once a Curator has assembled the dataset in the EBRAINS Knowledge Graph, combining the data, metadata and data descriptor, the data provider will receive a private URL for previewing the dataset prior to release. We need an official approval from the data custodian{{footnote}}The Data Custodian is responsible for the content and quality of the Data and metadata, and is the person to be contacted by EBRAINS CS in case of any misconduct related to the Data. It is the obligation of a Data Custodian to keep EBRAINS informed about changes in the contact information of the authors of the Datasets provided by them ([[EBRAINS Data Provision Protocol - version 1.1>>https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]]).{{/footnote}} to release the dataset. Once released, a [[DataCite DOI>>https://datacite.org/]] will be generated for the dataset. If the identical data collection has received a DOI elsewhere, we recommend re-using the already issued DOI. 122 +(% class="small" %)//If you have human data that do not classify as any of the above, please get in touch and we will clarify the available options. // 123 +))) 181 181 125 +Pseudonymized data is shared via the Human Data Gateway (HDG) due to GDPR regulations. The HDG adds an authentication layer to the data. 182 182 127 +**Data users** must request access to the data (via their EBRAINS account) and will receive access provided they actively accept the [[EBRAINS Access Policy>>https://ebrains.eu/terms#access-policy]], the [[EBRAINS General Terms of Use>>https://ebrains.eu/terms#general-terms-of-use]], and the [[EBRAINS Data Use Agreement>>https://ebrains.eu/terms#data-use-agreement]]. The account holder also have to accept that information about their request and access to specific data under HDG is being tracked and stored. 128 +\\**Data owners** must be aware that sharing under the HDG affects the legal responsibilities for the data. They must agree to joint control of the data (see the [[Data Provision Protocol v1>>url:https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]], section 1.4 - 1.5) and the Data Protection Officers of the responsible institutions must have accepted that the data can be shared under HDG. 129 +\\The Human Data Gateway (HDG) was introduced in February 2021 and developed across multiple teams in the HBP. The initiative to create the service and the initial design originated from EBRAINS Curation in close collaboration with the Data compliance team and the HBP Data Governance Working Group. HDG is a response to the needs of multiple data providers who are bringing data of human origin to EBRAINS. HDG covers the sharing of a limited range of data of human origin, i.e., data without direct identifiers and with very few indirect identifiers (strongly pseudonymized, de-identified). It is an extension of the existing services and does not replace the future EBRAINS Service for sensitive data (planned for 2024) which is outside the domain of the current EBRAINS Data and Knowledge services. 183 183 184 184 185 185 ---- ... ... @@ -186,339 +186,144 @@ 186 186 187 187 === Step by Step - Models === 188 188 136 +[place-holder-process-diagram] 189 189 190 -==== 1. Startearly====138 +==== **1. model step 1 ** ==== 191 191 192 - It is not necessaryto wait until you are ready to publish to register your model with EBRAINS.140 +Text 193 193 194 -By registering a model early in your project, you can take advantage of EBRAINS tools 195 -to keep track of simulations and to share them with your collaborators. 196 196 197 -==== 2. Create/choosea Collabworkspace ====143 +==== **2. model step 2** ==== 198 198 199 - Weuse EBRAINS Collaboratory "collab" workspaces to help manage the model curation process.145 +Text 200 200 201 -In particular, we use collab membership (the "Team") to control who can view or edit your model metadata prior to publication. 202 202 203 -It is up to you whether you create a new collab for each model, or reuse an existing collab 204 -(it is no problem to have multiple models associated with a single collab). 205 - 206 -Collabs are also useful for storing simulation results, adding documentation for your model, 207 -and/or providing tutorials in Jupyter notebooks. 208 - 209 -==== 3. Upload code ==== 210 - 211 -We recommend storing model code and/or configuration files in an online Git repository, for example on GitHub. 212 -This repository should be public when you publish the model, but a private repository can be used for model development. 213 - 214 -Alternatively, you can upload code to the Collab Drive or Bucket storage. 215 - 216 -==== 4.Submit metadata ==== 217 - 218 -We recommend submitting metadata using the Model Catalog app, installed in your collab. 219 - 220 -To install it: 221 - 222 -1. click the "+ Create" button 223 -1. in the "Create Page" form, add a title, such as "Model Catalog", and select "Community App", then click "Create" 224 -1. scroll down until you find the "Model Catalog" app, click "Select", then "Save & View" 225 - 226 -You will then see a table of all the models and validation tests associated with this collab. 227 -If this is your first time using the app, the table will probably be empty. 228 -To add your model, click "+", fill in the form, then click "Add model". 229 - 230 -As development of your model proceeds, you can easily register new versions of the code, 231 -and new parameterizations, by clicking "Add new version". 232 - 233 -If you prefer not to use the app, you can instead fill in the [[Curation request form>>https://nettskjema.no/a/277393#/]]., 234 -and you will be contacted by e-mail with further instructions. 235 - 236 -==== 5. Provide a reference dataset ==== 237 - 238 -Once you're ready to publish your model entry in the EBRAINS Knowledge Graph, 239 -we encourage you to provide a dataset containing the simulation results produced by your model, 240 -following the process under "Step by step - Data" above. 241 - 242 -These reference data will be linked to the model, and will be helpful to anyone trying to 243 -reuse your model. 244 - 245 -We will soon introduce a "Reproducible" badge for all models that include a reference dataset, 246 -and whose simulation results can be reproduced by an EBRAINS curator. 247 - 248 -==== 6. Request publication, preview and publish ==== 249 - 250 -Until you request your model entry to be published in the EBRAINS Knowledge Graph, 251 -only members of the collab will be able to view the model entry, in the Model Catalog app 252 -or using the Model Validation Python client. 253 - 254 -After publication, the model will appear in the [[EBRAINS public search results>>https://search.kg.ebrains.eu/?category=Model||rel="noopener noreferrer" target="_blank"]], and will receive a DOI. 255 - 256 -To request publication, [[contact EBRAINS support>>https://ebrains.eu/support||rel="noopener noreferrer" target="_blank"]], providing the collab name and the model name or ID. 257 - 258 - 259 -Curators will then perform a number of checks: 260 - 261 -1. Does the model description provide sufficient context to understand the purpose and use of the model? 262 -1. Does the code repository contain a licence file, explaining the conditions for reusing the code? 263 -1. Does the model have a clearly defined version identifier (e.g. v1.0)? For models in a Git repository, the version identifier should match the name of a tag or release. 264 - 265 -The curators will also take a snapshot of your model code. 266 - 267 -* For models in public Git repositories, we archive a copy of the repository in [[Software Heritage>>https://www.softwareheritage.org/||rel="noopener noreferrer" target="_blank"]]. 268 -* For models in a collab Bucket or Drive, we make a read-only copy of the code in a public container in the EBRAINS repository. 269 - 270 -Once this is done, you will be invited to review a preview of how the model entry will appear in the KG Search, 271 -and will have the opportunity to request modifications prior to approval and publication. 272 - 273 273 ---- 274 274 275 -=== Step by Step - Software ===150 +=== Step by Step - Code === 276 276 152 +[place-holder-process-diagram] 277 277 278 -(% class="box floatinginfobox" id="software-curation-infographic" %) 279 -((( 280 -(% style="text-align:center" %) 281 -//Software curation at a glance// 282 -// // 283 -[[[[image:Thumb2.png||alt="EBRAINS-Share-Software.pdf" height="287" width="197"]]>>attach:EBRAINS-Share-Software-4.pdf]] 284 -))) 154 +==== **1. code step 1 ** ==== 285 285 286 - (% style="margin-left:15px" %)[[[[image:Screenshot2023-06-06 1122082.png||alt="swc-flow.png" height="136" width="637"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]156 +Text 287 287 288 -1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions, you will find the links to your software and software version entries in the Knowledge Graph. 289 -1. Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary. 290 -1. After a quality check, we integrate and publish the information to the Knowledge Graph. Your software is then searchable and usable for the neuroscience community. 291 291 292 - Ifyouwant toadd a newversionto an already curated software,pleaserequest this via the [[curation request form>>https://nettskjema.no/a/277393]].159 +==== **2. code step 2** ==== 293 293 294 - For moreinformation, visit our [[Guide to Software Curation in the EBRAINS Knowledge Graph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] or see our infographic on the right.161 +Text 295 295 296 - 297 297 ---- 298 298 299 -=== Sharinghuman subjectata ===165 +=== When you've completed the curation process === 300 300 301 -(% class="box floatinginfobox" %) 302 -((( 303 -**Human subject data that can be shared on EBRAINS:** 304 -// // 305 -// - Post-mortem data// 306 -// - Aggregated data// 307 -// - Strongly pseudonymized or de-identified subject data// 308 -// with a legal basis for sharing (e.g. Informed Consent)// 309 -// // 167 +Curated data, models and software are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and programmatically via the [[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadata schemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]]. 310 310 311 -(% class="small" %) 312 -//If you have human data that does not qualify as any of the above,// 313 -//please [[get in touch>>https://www.ebrains.eu/contact/]] and we will clarify the available options.// 314 -))) 169 +Data and models are linked to and discoverable via the species-specific [[EBRAINS Interactive Atlas Viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]]. 315 315 316 - 317 -Human subject data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]]. 318 - 319 -Post-mortem and aggregated human data can be shared openly, given direct identifiers in the metadata are removed. Strongly pseudonymized and de-identified data can be shared via the Human Data Gateway (HDG). 320 - 321 -The Human Data Gateway (HDG) was introduced in February 2021 as a response to the needs of multiple data providers who are bringing human subject data to EBRAINS. HDG covers the sharing of strongly pseudonymized or de-identified data, a limited range human subject data without direct identifiers and with very few indirect identifiers. 322 - 323 -The HDG adds an an authentication layer on top of the data. This means that **data users **must request access to the data (via their EBRAINS account) and will receive access provided they actively accept the [[EBRAINS Access Policy>>https://ebrains.eu/terms#access-policy]], the [[EBRAINS General Terms of Use>>https://ebrains.eu/terms#general-terms-of-use]], and the [[EBRAINS Data Use Agreement>>https://ebrains.eu/terms#data-use-agreement]]. The account holder also have to accept that information about their request and access to specific data under HDG is being tracked and stored. **Data owners** must be aware that sharing under the HDG affects the legal responsibilities for the data. They must agree to joint control of the data (see the [[Data Provision Protocol v1>>url:https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]], section 1.4 - 1.5) and the Data Protection Officers of the responsible institutions must have accepted that the data can be shared under HDG. 324 - 325 -The HDG is an extension of the existing services and does not replace the future EBRAINS Service for sensitive data (planned for 2024) which is outside the domain of the current EBRAINS Data and Knowledge services. 326 - 327 327 ---- 328 328 329 -== ** The openMINDSmetadata framework** ==173 +== **Information and resources for researchers looking to share data** == 330 330 331 -(% class="box floatinginfobox" %) 332 -((( 333 -[[[[image:https://github.com/HumanBrainProject/openMINDS/raw/main/img/light_openMINDS-logo.png||alt="openMINDS logo" height="87" width="164"]]>>https://github.com/HumanBrainProject/openMINDS]] 334 -))) 175 +Below you can find some resources that can come in handy if you are looking to share data via EBRAINS, or in general. 335 335 336 -openMINDS (open Metadata Initiative for Neuroscience Data Structures) is a community-driven, open-source metadata framework for graph database systems, such as the EBRAINS Knowledge Graph. It is composed of linked metadata models, libraries of serviceable metadata instances, and supportive tooling ([[openMINDS Python>>url:https://pypi.org/project/openMINDS/]], openMINDS Matlab). For exploring the openMINDS schemas, go to the [[HTML documentation>>url:https://humanbrainproject.github.io/openMINDS/]]. For a full overview of the framework, go to [[the openMINDS collab>>url:https://wiki.ebrains.eu/bin/view/Collabs/openminds/]] or the [[GitHub repository>>https://github.com/HumanBrainProject/openMINDS]]. 337 - 338 -For feedback, requests, or contributions, please get in touch with the openMINDS development team via 339 - 340 -* the support-email: [[openminds@ebrains.eu>>path:mailto:openminds@ebrains.eu]] 341 -* the [[GitHub issue tracker>>url:https://github.com/HumanBrainProject/openMINDS/issues]] 342 -* the INCF NeuroStars [[openMINDS Community Forum>>url:https://neurostars.org/t/openminds-community-forum-virtual/20156]] 343 - 344 344 ---- 345 345 346 -== **The curationteam: meetthecurators** ==179 +=== **The benefits of sharing data ** === 347 347 348 - TheEBRAINScuratorshelpresearcherspublishtheir research usingthe EBRAINSResearchInfrastructure.A curator’sjobissimilartothejobof aneditorofa scientific journal, checkingtheis organized,understandable, accessible andsufficientlydescribed.181 +(% style="color:#000000" %)Sharing your data, models or code (research products) via EBRAINS makes it discoverable amongst other research products available in the (%%)[[(% style="color:#000000" %)EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]](%%). This is made possible by the highly flexible metadata framework describing neuroscience data in detail. 349 349 350 -The curators in EBRAINS are located in Oslo, Jülich, Trier and Paris. 351 - 183 +(% style="color:#000000" %)EBRAINS is gradually implementing interconnected tools and analysis workflows developed in the Human Brain Project (HBP) to further enhance the output from adding your dataset to the database. 352 352 353 -**Located in Norway** 354 354 355 -|(% style="width:303px" %)((( 356 -[[image:My project2.jpg||height="209" width="167"]] 186 +By sharing your data via EBRAINS, you gain access to the following benefits: 357 357 358 - **ArchanaGolla**188 +[[image:image-20230324170841-3.png]] 359 359 360 -(% class="small" %)Curation Scientist 361 -Neuroscience (PhD)(%%) 362 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Behavioral neuroscience and microscopy** 363 -)))|(% style="width:303px" %)((( 364 -[[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]] 365 365 366 -**Camilla H. Blixhavn** 367 367 368 -(% class="small" %)Curation Scientist, 369 -Phd Student 370 -Neuroscience (M. Sc.)(%%) 371 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and data integration** 372 -)))|(% style="width:303px" %)((( 373 -[[image:My project (1).jpg||height="209" width="167"]] 192 +We support you to better follow the FAIR^^ ^^guiding principles for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}. Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product. 374 374 375 -**Ingrid Reiten** 376 376 377 -(% class="small" %)Curation Scientist, 378 -Phd Student 379 -Neuroscience (M. Sc.)(%%) 380 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and structural connectivity** 381 -)))|(% style="width:303px" %)((( 382 -[[image:My project1.jpg||height="209" width="167"]] 383 - 384 -**Sophia Pieschnik** 385 - 386 -(% class="small" %)Curation Scientist 387 -Neurocognitive Psychology (M. Sc.)(%%) 388 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroimaging ** 389 -))) 390 - 391 -|(% style="width:303px" %)((( 392 -[[image:My project.jpg||height="209" width="167"]] 393 - 394 -**Heidi Kleven** 395 - 396 -(% class="small" %)Curation Scientist, 397 -Phd Student 398 -Neuroscience (M. Sc.)(%%) 399 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and brain atlases** 400 -)))| | | 401 - 402 - 403 -\\**Located in Germany** 404 - 405 -|(% style="width:303px" %)((( 406 -[[image:My project (2).jpg||height="209" width="167"]] 407 - 408 -**Jan Gündling** 409 - 410 -(% class="small" %)Curation Scientist, 411 -Phd Student 412 -Sensors and Cognitive Psychology (M. Sc.)(%%) 413 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Human-Computer Interaction** 414 -)))|(% style="width:303px" %)((( 415 -[[image:Lyuba.jpg||height="209" width="167"]] 416 - 417 -**Lyuba Zehl** 418 - 419 -(% class="small" %)Knowledge Systems Engineer 420 -Dr. rer. nat. (Systems Neuroscience)(%%) 421 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis** 422 -)))|(% style="width:303px" %) |(% style="width:303px" %) 423 - 424 424 ---- 425 425 426 - ==**Add practicalvalueoyourshareddata,modelorsoftware**==197 +(% style="font-family:inherit" %) (% style="color:#1a202c; font-family:inherit; font-size:26px" %)**What can I share on EBRAINS? ** 427 427 199 +(% class="wikigeneratedid" id="H" %) 200 +[[image:image-20230324170829-2.png]] 428 428 429 ----- 430 430 431 -=== **Showcase shared data, models or software in other services** === 432 - 433 -Below is a list of additional services that data, models or software shared via EBRAINS can benefit from. EBRAINS is continuously looking to increase the number of interoperable services. 434 - 435 - 436 -|(% colspan="2" %)**Viewer for 2D images** 437 -|[[image:MIO_screenshot.PNG]]|Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]]. 438 -|(% colspan="2" %)**Viewer for sequential atlas-registered 2D images with annotation options** 439 -|[[image:LZ_screenshot.PNG]]|Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]]. 440 -|(% colspan="2" %)**Interactive 3D atlas viewer with options for data visualization** 441 -|[[image:3Datlas_screenshot.PNG]]|Upload your data to the //Siibra-explorer//: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to register your data to atlases, read about the [[Atlas services on ebrains.eu>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]]. 442 -|(% colspan="2" %)**Use your research product in an interactive publication** 443 -|[[image:LivePaper_screenshot.PNG]]|Add your data, models or software to a// Live paper. //Read more about [[Live papers on ebrains.eu>>https://www.ebrains.eu/data/live-papers/live-papers]]. 444 - 445 445 ---- 446 446 447 -=== =**Addatutorialor learningresource ** ====205 +=== **At a glance: "Sharing experimental data on EBRAINS" ** === 448 448 449 -(% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %) 450 -(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow// 451 451 208 +|(% style="width:439px" %)((( 209 +[[[[image:image-20230324171114-2.png||height="354" width="250"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]] 210 +)))|(% style="width:461px" %)((( 211 +[[[[image:image-20230324171109-1.png||height="352" width="250"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]] 212 +)))|(% style="width:416px" %)[[[[image:image-20230330120354-1.png||height="352" width="250"]]>>https://drive.ebrains.eu/f/707147a883b94fae8e69/]] 213 +|(% style="width:439px" %)//Collection of useful information for researchers looking to share experimental data on EBRAINS.//|(% style="width:461px" %)//The EBRAINS data descriptor: a general overview //|(% style="width:416px" %)//Introduction to data organization: A [[collection of guidelines>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] on how to organise files and folders to ensure consistency and reproducibility in the future. // 452 452 453 -==== **Create a workflow** ==== 454 - 455 -(% class="wikigeneratedid" id="H-Workflows5Binformation5D" %) 456 -(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow// 457 - 458 458 ---- 459 459 460 -=== ** The benefitsofsharingdata ** ===217 +=== **Integrate your data in the EBRAINS atlas services** === 461 461 462 -B ysharingyour datavia EBRAINS,yougain access to the followingbenefits:219 +EBRAINS supports viewers for a variety of data, and is continuously looking to improve the services for visualising data. For 2D histology image data that is registered to an EBRAINS supported brain atlas, the data and the overlying atlas plates can be uploaded to the LocaliZoom viewer. See for example the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. 463 463 464 - [[image:image-20230324170841-3.png]]221 +To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu. 465 465 466 - 467 - 468 -We support you to better follow the [[FAIR^^ ^^guiding principles>>https://www.nature.com/articles/sdata201618]] for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}. Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product. 469 - 470 470 ---- 471 471 472 -=== ** Frequentlyaskedquestions ** ===225 +=== **Common concerns - and answers ** === 473 473 474 474 ((( 475 -==== ==== 228 +==== ==== 476 476 477 477 ((( 478 -> Is the curation process time consuming and difficult?231 +>The curation process is time consuming and difficult 479 479 ))) 480 480 ))) 481 481 482 -No, if communication is on a regular basis, we are able to finish curation within two weeks. Publishing your data naturally takes some effort but we will support you as much as possible. 235 +(% class="wikigeneratedid" id="HHowcanIshareA0models3F" %) 236 +Publishing your data naturally takes some time and effort but we will support you as much as possible. If communication is on a regular basis, we are able to finish basic curation - from the initial contact to dataset release - within two weeks. 483 483 484 -> Is sharing my dataalso beneficial for meoronly for others?238 +>Sharing my data is not beneficial for me - only for others 485 485 240 + 486 486 When you publish your data via EBRAINS, we provide comprehensive data management support and safe long term storage - all free of charge. Additionally, your data can be cited, just like a scientific journal article. Sharing your data may even lead to new funding opportunities. Many funders specifically support projects that are part of the “Open Science” initiative. 487 487 488 -> Can my databetoo insignificant to share?243 +>My data is too insignificant to share 489 489 490 -No, there is no such thing as insignificant data. Data that is considered insignificant for a given topic, may have great significance for another. By making “insignificant” data publicly available, other researchers may find something interesting that was off-topic for your own purposes. 491 491 492 - >Canmydatabe easily misused ifIshare it?246 +There is no such thing as insignificant data. Data that is considered insignificant for a given topic, may have great significance for another. By making “insignificant” data publicly available, other researchers may find something interesting that was off-topic for your own purposes. 493 493 494 - No,yourdatawill becovered byaCreativeCommons licenseofyourchoice. Therearea varietyof licenses available, enabling youtopreventuseforspecific purposes, e.g. commercialuse.248 +>My data can easily be misused if I share it with the world 495 495 496 ->Can I share my data before my paper is published? 497 497 498 -Y es, if youdo not want to shareyourdata beforepublishingtheresults inan article,you canpublishyourdataset withan embargostatus. Thiswill make itpossibleto find informationaboutthe data withoutmakingthedataitselfavailable,and giveyou aciteableDOI.251 +Your data will be covered by a Creative Commons license of your choice. There are a variety of licenses available, enabling you to prevent use for specific purposes, e.g. commercial use. 499 499 500 -> CanIlosemycompetitive edgeifIshare my databefore I publish the associated paper?253 +>I don't think I'm allowed to share my data 501 501 502 -No, publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data. 503 503 256 +Many institutions are still very careful about what can be shared and how, but the situation is constantly evolving. As a researcher providing data, you will be asked to fill out an ethics compliance survey which survey to ensure that data published through the EBRAINS platform has been collected according to EU regulations. We are working on solutions for sharing anonymised human data that complies with GDPR standards to protect the identity of research subjects. 504 504 505 - ----258 +>I can't share my data before my paper is published 506 506 507 -== Contact == 508 508 509 - [[curation-support@ebrains.eu>>mailto:curation-support@ebrains.eu]]261 +If you do not want to share your data before publishing the results in an article, you can publish your dataset with an embargo status. This will make it possible to find information about the data without making the data itself available, and give you a citeable DOI. 510 510 263 +>If I share my data before I publish the associated paper, I will lose my competitive edge 511 511 512 -== Affiliated laboratories == 513 513 266 +Publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data. 514 514 515 -//Institute of Basic Medical Sciences,** **University of Oslo, Norway (PI: Jan G. Bjaalie, Trygve B. Leergaard)// 516 516 517 - //Human-Computer Interaction, University of Trier, Germany //269 +---- 518 518 519 - //Instituteof Neuroscienceand Medicine (INM-1), Research CentreJülich, Germany (PI: Timo Dicksheid)//271 +== Contact == 520 520 273 +[[curation-support@ebrains.eu>>mailto:curation-support@ebrains.eu]] 521 521 522 -== References == 523 523 524 524 {{putFootnotes/}}
- 3Datlas_screenshot.PNG
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.eapapp - Size
-
... ... @@ -1,1 +1,0 @@ 1 -410.7 KB - Content
- 69399800_399857187337623_8446982631391756288_n.jpg
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.spieschnik - Size
-
... ... @@ -1,1 +1,0 @@ 1 -198.8 KB - Content
- Camilla.jpg
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.spieschnik - Size
-
... ... @@ -1,1 +1,0 @@ 1 -607.5 KB - Content
- EBRAINS-Share-Software-4.pdf
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.jan - Size
-
... ... @@ -1,1 +1,0 @@ 1 -1.2 MB - Content
- EBRAINS-Share-Software.pdf
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.jan - Size
-
... ... @@ -1,1 +1,0 @@ 1 -483.2 KB - Content
- Image-1.jpg
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.spieschnik - Size
-
... ... @@ -1,1 +1,0 @@ 1 -154.3 KB - Content
- LZ_screenshot.PNG
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.eapapp - Size
-
... ... @@ -1,1 +1,0 @@ 1 -1.8 MB - Content
- LivePaper_screenshot.PNG
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.eapapp - Size
-
... ... @@ -1,1 +1,0 @@ 1 -120.9 KB - Content
- Lyuba.jpg
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.spieschnik - Size
-
... ... @@ -1,1 +1,0 @@ 1 -568.2 KB - Content
- MIO_screenshot.PNG
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.eapapp - Size
-
... ... @@ -1,1 +1,0 @@ 1 -607.0 KB - Content
- My project (1).jpg
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.spieschnik - Size
-
... ... @@ -1,1 +1,0 @@ 1 -772.0 KB - Content
- My project (2).jpg
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.spieschnik - Size
-
... ... @@ -1,1 +1,0 @@ 1 -564.9 KB - Content
- My project.jpg
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.spieschnik - Size
-
... ... @@ -1,1 +1,0 @@ 1 -1007.8 KB - Content
- My project1.jpg
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.spieschnik - Size
-
... ... @@ -1,1 +1,0 @@ 1 -718.0 KB - Content
- My project2.jpg
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.spieschnik - Size
-
... ... @@ -1,1 +1,0 @@ 1 -701.2 KB - Content
- Screenshot 2023-06-06 112208.png
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.jan - Size
-
... ... @@ -1,1 +1,0 @@ 1 -138.1 KB - Content
- Screenshot 2023-06-06 1122082.png
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.jan - Size
-
... ... @@ -1,1 +1,0 @@ 1 -123.6 KB - Content
- Thumb.png
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.jan - Size
-
... ... @@ -1,1 +1,0 @@ 1 -204.9 KB - Content
- Thumb2.png
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.jan - Size
-
... ... @@ -1,1 +1,0 @@ 1 -165.5 KB - Content
- ansattfoto2.jpg
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.spieschnik - Size
-
... ... @@ -1,1 +1,0 @@ 1 -1.8 MB - Content
- csm_Jan_Gruendling_3_bf9567ebb1.jpg
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.spieschnik - Size
-
... ... @@ -1,1 +1,0 @@ 1 -108.6 KB - Content
- image-20230621121014-1.png
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.ingrreit - Size
-
... ... @@ -1,1 +1,0 @@ 1 -106.5 KB - Content
- swc-flow-no-header.png
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.jan - Size
-
... ... @@ -1,1 +1,0 @@ 1 -39.4 KB - Content
- swc-flow.png
-
- Author
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.jan - Size
-
... ... @@ -1,1 +1,0 @@ 1 -44.1 KB - Content
- XWiki.XWikiRights[3]
-
- Allow/Deny
-
... ... @@ -1,1 +1,0 @@ 1 -Allow - Levels
-
... ... @@ -1,1 +1,0 @@ 1 -view - Users
-
... ... @@ -1,1 +1,0 @@ 1 -XWiki.XWikiGuest