Changes for page data-curation-copy

Last modified by eapapp on 2023/07/04 16:46
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edited by eapapp
on 2023/07/04 16:46
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1 -data-curation-copy
1 +test-ir2
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1 -Collabs.WebHome
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1 -XWiki.eapapp
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1 +== Publishing neuroscience data, models and software via EBRAINS ==
18 18  
19 19  
20 -(% class="wikigeneratedid" id="HPublishingneurosciencedata2CmodelsandsoftwareviaEBRAINS" %)
21 -(% style="font-size:2em" %)**Publishing neuroscience data, models and software via EBRAINS**
22 -
23 23  (% class="wikigeneratedid" %)
24 24  The aim of this collab is to provide you with detailed information about publishing data, simulations, computational models, and software via EBRAINS. If you want a quick overview of the sharing process, see [[https:~~/~~/ebrains.eu/service/share-data>>https://ebrains.eu/service/share-data]].
25 25  
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27 27  {{toc depth="3" start="2"/}}
28 28  {{/box}}
29 29  
11 +
30 30  == **Information to get started** ==
31 31  
32 32  **[[REQUEST CURATION>>https://nettskjema.no/a/277393#/]] to share data, simulations, computational models, and software, - or to add a new version of an existing one. **
... ... @@ -34,10 +34,8 @@
34 34  Have you already published your data somewhere else? You can increase the exposure and impact of your shared dataset by also listing it on EBRAINS.
35 35  
36 36  
37 -(% class="box" style="text-align: center; font-size: 1.2em" %)
38 -(((
39 -Search existing data, models and software in the [[EBRAINS Knowledge Graph>>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]]
40 -)))
19 +(% style="text-align: center;" %)
20 +Search existing data, models and software in [[the EBRAINS Knowledge Graph Search>>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]]
41 41  
42 42  
43 43  EBRAINS accepts data from all modalities and from all species, as well as models, software, web services and metadata models (collectively referred to as research products) for sharing. You'll find detailed information about how to share each research product below. 
... ... @@ -75,27 +75,18 @@
75 75  
76 76  [[image:image-20230326054341-1.png]]
77 77  
78 -(% class="box floatinginfobox" id="share-data-infographic" %)
79 -(((
80 -(% style="text-align:center" %)
81 -//Download our infographic//
82 -//with all you need to know//
83 -//to share data on EBRAINS: //
84 -// //
85 -[[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
86 -)))
58 +==== [[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]//All you need to know to share data on EBRAINS.// ====
87 87  
88 88  
89 89  ==== **1. Provide some general information about your dataset** ====
90 90  
91 91  
64 +[[image:https://lh3.googleusercontent.com/zh7TvO6w04YGW9jIhfhmdT6CexdGs-AWOLfJXKRq7-tdHOu6ar1rOQx8o4rZevrjXqgPZ7-Ejv4b6X9XpgXuHpdUXi-mBTHIUnv5Vz-DktHt0sP-PZ3gE8XgZid3TV3swV1uTCBhHx11ge0pjP7RVxswGQ=s2048||height="85px;" width="91px;"]]** Fill in the [[Curation request form>>https://nettskjema.no/a/277393#/]]. **
92 92  
93 -(% style="margin-right:10px" %)[[image:https://lh3.googleusercontent.com/zh7TvO6w04YGW9jIhfhmdT6CexdGs-AWOLfJXKRq7-tdHOu6ar1rOQx8o4rZevrjXqgPZ7-Ejv4b6X9XpgXuHpdUXi-mBTHIUnv5Vz-DktHt0sP-PZ3gE8XgZid3TV3swV1uTCBhHx11ge0pjP7RVxswGQ=s2048||height="85px;" width="91px;"]](%%)** Fill in the [[Curation request form>>https://nettskjema.no/a/277393#/]]. **
94 -
95 95  This form collects preliminary information about your data, allowing us to assess whether the dataset fits within the scope of EBRAINS. The submission generates a curation ID allowing us to track the case.
96 96  
97 97  
98 -(% style="margin-right:10px" %)[[image:https://lh6.googleusercontent.com/yw442oS6BwZOlY-_0BoVxyCW3DrdcJ5ogCes92iOD16_rgNEVk56aNMDaVWXFfBLYv24bHzmGgBF9wg0szjH70xzuRTqxoQAeuy3knNO7axCHoyZDXwtyTcMgFnYwbOYxOT29LK-zchrUKLW6Mle93kOkQ=s2048||height="94px;" width="94px;"]](%%)**Fill in the [[Ethics and Regulatory compliance form>>https://nettskjema.no/a/224765]]**.
69 +[[image:https://lh6.googleusercontent.com/yw442oS6BwZOlY-_0BoVxyCW3DrdcJ5ogCes92iOD16_rgNEVk56aNMDaVWXFfBLYv24bHzmGgBF9wg0szjH70xzuRTqxoQAeuy3knNO7axCHoyZDXwtyTcMgFnYwbOYxOT29LK-zchrUKLW6Mle93kOkQ=s2048||height="94px;" width="94px;"]]**Fill in the [[Ethics and Regulatory compliance form>>https://nettskjema.no/a/224765]]**.
99 99  
100 100  This form collects the necessary information needed for us to evaluate whether we can ethically and legally share the data via EBRAINS.
101 101  
... ... @@ -104,41 +104,31 @@
104 104  
105 105  ==== **2. Upload data ** ====
106 106  
107 -(% class="box floatinginfobox" id="share-data-infographic" %)
108 -(((
109 -(% style="text-align:center" %)
110 -//Download our infographic//
111 -//with guidelines
112 -on data organization: //
113 113  
114 -(% style="text-align:center" %)
115 -[[[[image:image-20230621121014-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/lib/f5cf4964-f095-49bd-8c34-e4ffda05a497/file/ebrains-infographic-data-organisation.pdf/]]
116 -)))
79 +[[image:https://lh5.googleusercontent.com/sieKO-kW8O18iPaUyonwyo4UfHBmtc2E9BDnjbx52j6J_uGmm-OzGAo7sloMk3sYwKa6QW3hYQsOA9N4H7uGQpca088Wrk0Nurpt_J3B0-NSbcaPNdZIh21otQcG6jnAxLGiKoEvkTyaDGTMk3fu7me8mQ=s2048||height="94px;" width="94px;"]]**Ensure data is structured consistently prior to upload. **
117 117  
118 -(% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/sieKO-kW8O18iPaUyonwyo4UfHBmtc2E9BDnjbx52j6J_uGmm-OzGAo7sloMk3sYwKa6QW3hYQsOA9N4H7uGQpca088Wrk0Nurpt_J3B0-NSbcaPNdZIh21otQcG6jnAxLGiKoEvkTyaDGTMk3fu7me8mQ=s2048||height="94px;" width="94px;"]](%%)**Ensure data is structured consistently prior to upload. **
81 +We look for organized data, not organized according to our standard. This is to support the broadest degree of sharing possible. We do however require that the data is organized in a consistent and precise manner. Please see our// //[[collection of guidelines on data organization>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] for further guidance.
119 119  
120 -We look for organized data, not organized according to our standard. This is to support the broadest degree of sharing possible. We do however require that the data is organized in a consistent and precise manner. Please see our// //[[guidelines on data organization>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] for further guidance.
83 +[[image:https://lh5.googleusercontent.com/EWtYwfVlbeC-jqPasgmzidqc50GrkKIEgwXeUeql8aaMHIukmFdWEy0nufVWWATbxDDK3XwwZEDmASrbpCsBk1u0HpAd8x4ZgAMsMPRcWyrb9etlV6FgKE_QN2e6SqKxHE0rzkR8uI1rRW_5z21TFGYVnw=s2048||height="91px;" width="91px;"]]**Upload data to EBRAINS Storage, either using a drag-and-drop solution (opt. 1) or an interactive python script (opt. 2).**
121 121  
122 -(% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/EWtYwfVlbeC-jqPasgmzidqc50GrkKIEgwXeUeql8aaMHIukmFdWEy0nufVWWATbxDDK3XwwZEDmASrbpCsBk1u0HpAd8x4ZgAMsMPRcWyrb9etlV6FgKE_QN2e6SqKxHE0rzkR8uI1rRW_5z21TFGYVnw=s2048||height="91px;" width="91px;"]](%%)**Upload data to EBRAINS Storage, either using a drag-and-drop solution (opt. 1) or an interactive python script (opt. 2).**
85 +//Opt. 1. //For smaller datasets with a reasonable amount of files, we recommend using the Collab-Bucket solution (drag-and-drop). A Collab Bucket must first be assigned to a dataset, which happens when a datasets is accepted for sharing.
123 123  
124 -**Opt. 1. **For smaller datasets with a reasonable amount of files, we recommend using the Collab-Bucket solution (drag-and-drop). A Collab Bucket must first be assigned to a dataset, which happens when a datasets is accepted for sharing.
87 +//Opt. 2. //For larger datasets or datasets with a large amount of files, we recommend using a programmatic approach. The [[python script>>https://github.com/eapapp/ebrains-data-storage/tree/main/data-proxy]] is interactive and does not require any additional programming.
125 125  
126 -**Opt. 2. **For larger datasets or datasets with a large amount of files, we recommend using a programmatic approach. The [[python script>>https://github.com/eapapp/ebrains-data-storage/tree/main/data-proxy]] is interactive and does not require any additional programming.
127 127  
128 -
129 129  EBRAINS offers secure, long-term storage at [[CSCS Swiss National Supercomputing Centre>>url:https://www.cscs.ch/]], with currently no upper limit of storage capacity. 
130 130  
131 131  If a data collection is already uploaded elsewhere, we may link to the already existing repository.
132 132  
133 133  
134 -==== **3. Submit metadata** ====
95 +(% style="color:#1a202c; font-family:inherit; font-size:23px" %)**3. Submit metadata**
135 135  
136 136  
137 -(% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/WS4T2LhF9znWWChn3Z550agLrrb-KTWdYVsJSv0lh4cGjKbjuN1WV68WER9xkYqi1UqN7KYZz7bImYz3_TpOuTuvma7T192QUiUZoyJVPk1fj5NSDSQh_kpIeBufAOdDtsDRpPKK_P5EDPqRCTAaOTNyCw=s2048||height="91px;" width="91px;"]](%%)**Submit metadata using the **[[EBRAINS Metadata Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]** (opt. 1), or directly via the Knowledge Graph (opt. 2) **
98 +[[image:https://lh5.googleusercontent.com/WS4T2LhF9znWWChn3Z550agLrrb-KTWdYVsJSv0lh4cGjKbjuN1WV68WER9xkYqi1UqN7KYZz7bImYz3_TpOuTuvma7T192QUiUZoyJVPk1fj5NSDSQh_kpIeBufAOdDtsDRpPKK_P5EDPqRCTAaOTNyCw=s2048||height="91px;" width="91px;"]]**Submit metadata using the **[[EBRAINS Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]** (opt. 1), or through direct interaction with the Knowledge Graph (opt. 2) **
138 138  
139 -**Opt. 1.** Manually submit the minimal required metadata via the [[EBRAINS Metadata Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. The minimal required metadata covers extended bibliographic information necessary to publish your dataset on EBRAINS. The submitted information, including uploaded files, will be sent to the Curation team automatically
100 +//Opt. 1.// Manually submit the minimal required metadata via the [[EBRAINS Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. The minimal required metadata covers extended bibliographic information necessary to publish your dataset on EBRAINS. The submitted information, including uploaded files, will be sent to the Curation team automatically
140 140  
141 -**Opt. 2.** To go beyond the minimal required metadata, you can directly interact with the Knowledge Graph (KG) in your private space. Within the private space, you can upload metadata and interact with them, moreover you can connect your metadata to existing publicly accessible entries. Access to your private space is granted upon the initiation of the curation process. You can access your private space via:
102 +//Opt. 2.// To go beyond the minimal required metadata, you can directly interact with the Knowledge Graph (KG) in your private space. Within the private space, you can upload metadata and interact with them, moreover you can connect your metadata to existing publicly accessible entries. Access to your private space is granted upon the initiation of the curation process. You can access your private space via:
142 142  
143 143  * Knowledge Graph Editor: This User Interface allows you to manually enter metadata into your KG space and validate metadata that are programmatically uploaded. The Editor contains a basic set of openMINDS metadata templates, but can be extended to the full openMINDS metadata model on request. Access is granted once the request is accepted.
144 144  * [[Fairgraph>>https://fairgraph.readthedocs.io/en/stable/]]: This is the recommended software tool for programmatic interaction with the KG. It allows you to programmatically upload openMINDS compliant metadata into your KG space and interact with existing metadata.
... ... @@ -147,12 +147,10 @@
147 147  Datasets published through the EBRAINS Knowledge Graph have to be registered using **openMINDS compliant metadata** delivered as JSON-LD files. See this summary table for an overview of [[the minimally required openMINDS properties for publishing>>https://drive.ebrains.eu/lib/47995dbc-f576-4008-a76c-eefbfd818529/file/ebrains-minimum-required-metadata.xlsx]] on EBRAINS.
148 148  
149 149  
150 -==== **4. Write a Data Descriptor** ====
111 +==== **4. Write a Data Descriptor ** ====
151 151  
113 +[[image:https://lh4.googleusercontent.com/lMYEKOXzejbBydOdotWWteXQo7j363xRyntBGjcPZVEdtIU1CJYX7q1STpdr2JPZK4hpWWXk20UlkUOqDGL5kX6vnQVBSdrfUo6EGfXOwpuGq1Uygv0tTZJ0lRO6voJvg56QC2mufvjAcRXGfAKFOjtc6w=s2048||height="94px;" width="94px;"]]**Write a data descriptor by filling in **[[this template>>https://drive.ebrains.eu/f/a2e07c95b1a54090bbbc/?dl=1]]** . **
152 152  
153 -
154 -(% style="margin-right:10px" %)[[image:https://lh4.googleusercontent.com/lMYEKOXzejbBydOdotWWteXQo7j363xRyntBGjcPZVEdtIU1CJYX7q1STpdr2JPZK4hpWWXk20UlkUOqDGL5kX6vnQVBSdrfUo6EGfXOwpuGq1Uygv0tTZJ0lRO6voJvg56QC2mufvjAcRXGfAKFOjtc6w=s2048||height="94px;" width="94px;"]](%%)**Write a data descriptor by filling in **[[this template>>https://drive.ebrains.eu/f/a2e07c95b1a54090bbbc/?dl=1]]**.**
155 -
156 156  The Data Descriptor is a document helping others interpret and reuse (and prevent misuse) of your data, and is critical to achieve a basic level of FAIR. The document will be uploaded in the repository of the data, shared as a PDF. 
157 157  
158 158  See our infographic about the data descriptor for inspiration or guidance.
... ... @@ -161,343 +161,274 @@
161 161  
162 162  Journal publications sufficiently describing the shared data, such as made available through [[Nature Scientific Data>>http://www.nature.com/sdata/about]], [[Elsevier Data in Brief>>http://www.journals.elsevier.com/data-in-brief/]], [[BMC Data note>>https://bmcresnotes.biomedcentral.com/submission-guidelines/preparing-your-manuscript/data-note]] and more, can replace the EBRAINS Data Descriptor.
163 163  
123 +==== [[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]//The EBRAINS Data descriptor at-a-glance// ====
164 164  
165 -(% class="box floatinginfobox" id="data-descriptor-infographic" %)
166 -(((
167 -(% style="text-align:center" %)
168 -//Download our infographic
169 -about the EBRAINS Data//
170 -//Descriptor//
171 -// //
172 -[[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
173 -)))
174 174  
175 -==== **5. Preview and publish** ====
126 +==== **5. Preview and publish ** ====
176 176  
177 177  
178 -(% style="margin-right:10px" %)[[image:https://lh4.googleusercontent.com/XqT26Q4yWJK26cjtjhI4ToXoZZMxhT9LimG4Hk9mePxy0-KPKgpVIzcuiP5mOQowBgf2JjkrWUq2VbCmafWWZPJplEZALnFOlCZHLlQgzOx7fFwoBteyi_IlMLkPBS9vtOcdNIZ59HyLnQz4RsTQ0lUrSw=s2048||height="91px;" width="91px;"]](%%)**Preview and approve the release of your dataset. **
129 +[[image:https://lh4.googleusercontent.com/XqT26Q4yWJK26cjtjhI4ToXoZZMxhT9LimG4Hk9mePxy0-KPKgpVIzcuiP5mOQowBgf2JjkrWUq2VbCmafWWZPJplEZALnFOlCZHLlQgzOx7fFwoBteyi_IlMLkPBS9vtOcdNIZ59HyLnQz4RsTQ0lUrSw=s2048||height="91px;" width="91px;"]]**Preview and approve the release of your dataset. **Once a Curator has assembled the dataset in the EBRAINS Knowledge Graph, combining the data, metadata and data descriptor, the data provider will receive a private URL for previewing the dataset prior to release. We need an official approval from the data custodian{{footnote}}The Data Custodian is responsible for the content and quality of the Data and metadata, and is the person to be contacted by EBRAINS CS in case of any misconduct related to the Data. It is the obligation of a Data Custodian to keep EBRAINS informed about changes in the contact information of the authors of the Datasets provided by them ([[EBRAINS Data Provision Protocol - version 1.1>>https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]]).{{/footnote}} to release the dataset. Once released, a [[DataCite DOI>>https://datacite.org/]] will be generated for the dataset. If the identical data collection has received a DOI elsewhere, we recommend re-using the already issued DOI.
179 179  
180 -Once a Curator has assembled the dataset in the EBRAINS Knowledge Graph, combining the data, metadata and data descriptor, the data provider will receive a private URL for previewing the dataset prior to release. We need an official approval from the data custodian{{footnote}}The Data Custodian is responsible for the content and quality of the Data and metadata, and is the person to be contacted by EBRAINS CS in case of any misconduct related to the Data. It is the obligation of a Data Custodian to keep EBRAINS informed about changes in the contact information of the authors of the Datasets provided by them ([[EBRAINS Data Provision Protocol - version 1.1>>https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]]).{{/footnote}} to release the dataset. Once released, a [[DataCite DOI>>https://datacite.org/]] will be generated for the dataset. If the identical data collection has received a DOI elsewhere, we recommend re-using the already issued DOI.
181 181  
132 +----
182 182  
134 +==== **Sharing human subject data ** ====
183 183  
136 +(% class="box floatinginfobox" %)
137 +(((
138 +**Human subject data that can be shared on EBRAINS:**
184 184  
185 -----
140 +- Post-mortem data
141 +- Aggregated data
142 +- Strongly pseudonymized or de-identified subject data with a legal basis for sharing (e.g. Informed Consent)
186 186  
187 -=== Step by Step - Models ===
144 +(% class="small" %)//If you have human data that does not classify as any of the above, please get in touch and we will clarify the available options. //
145 +)))
188 188  
147 +Human subject data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
189 189  
190 -==== 1. Start early ====
149 +Post-mortem and aggregated human data can be shared openly, given direct identifiers in the metadata are removed. Strongly pseudonymized and de-identified data can be shared via the Human Data Gateway (HDG).
191 191  
192 -It is not necessary to wait until you are ready to publish to register your model with EBRAINS.
151 +The Human Data Gateway (HDG) was introduced in February 2021 as a response to the needs of multiple data providers who are bringing human subject data to EBRAINS. HDG covers the sharing of strongly pseudonymized or de-identified data, a limited range human subject data without direct identifiers and with very few indirect identifiers.
193 193  
194 -By registering a model early in your project, you can take advantage of EBRAINS tools
195 -to keep track of simulations and to share them with your collaborators.
153 +The HDG adds an an authentication layer on top of the data. This means that **data users **must request access to the data (via their EBRAINS account) and will receive access provided they actively accept the [[EBRAINS Access Policy>>https://ebrains.eu/terms#access-policy]], the [[EBRAINS General Terms of Use>>https://ebrains.eu/terms#general-terms-of-use]], and the [[EBRAINS Data Use Agreement>>https://ebrains.eu/terms#data-use-agreement]]. The account holder also have to accept that information about their request and access to specific data under HDG is being tracked and stored. **Data owners** must be aware that sharing under the HDG affects the legal responsibilities for the data. They must agree to joint control of the data (see the [[Data Provision Protocol v1>>url:https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]], section 1.4 - 1.5) and the Data Protection Officers of the responsible institutions must have accepted that the data can be shared under HDG.
196 196  
197 -==== 2. Create/choose a Collab workspace ====
155 +The HDG is an extension of the existing services and does not replace the future EBRAINS Service for sensitive data (planned for 2024) which is outside the domain of the current EBRAINS Data and Knowledge services.
198 198  
199 -We use EBRAINS Collaboratory "collab" workspaces to help manage the model curation process.
200 200  
201 -In particular, we use collab membership (the "Team") to control who can view or edit your model metadata prior to publication.
158 +----
202 202  
203 -It is up to you whether you create a new collab for each model, or reuse an existing collab
204 -(it is no problem to have multiple models associated with a single collab).
160 +=== Step by Step - Models ===
205 205  
206 -Collabs are also useful for storing simulation results, adding documentation for your model,
207 -and/or providing tutorials in Jupyter notebooks.
208 208  
209 -==== 3. Upload code ====
163 +~1. Request curation using the [[Curation request form>>https://nettskjema.no/a/277393#/]]. You will be contacted by a curator with more information.
210 210  
211 -We recommend storing model code and/or configuration files in an online Git repository, for example on GitHub.
212 -This repository should be public when you publish the model, but a private repository can be used for model development.
213 213  
214 -Alternatively, you can upload code to the Collab Drive or Bucket storage.
166 +//Additional information will be added soon.//
215 215  
216 -==== 4.Submit metadata ====
168 +----
217 217  
218 -We recommend submitting metadata using the Model Catalog app, installed in your collab.
170 +=== Step by Step - Software ===
219 219  
220 -To install it:
172 +[[[[image:swc-flow-no-header.png||alt="swc-flow.png"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
221 221  
222 -1. click the "+ Create" button
223 -1. in the "Create Page" form, add a title, such as "Model Catalog", and select "Community App", then click "Create"
224 -1. scroll down until you find the "Model Catalog" app, click "Select", then "Save & View"
174 +~1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions you will find the links to your software and software version entries in the Knowledge Graph.
225 225  
226 -You will then see a table of all the models and validation tests associated with this collab.
227 -If this is your first time using the app, the table will probably be empty.
228 -To add your model, click "+", fill in the form, then click "Add model".
176 +2. Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary.
229 229  
230 -As development of your model proceeds, you can easily register new versions of the code,
231 -and new parameterizations, by clicking "Add new version".
178 +3. After a quality check, we integrate and publish the information to the Knowledge Graph. Your software is then searchable and usable for the neuroscience community.
232 232  
233 -If you prefer not to use the app, you can instead fill in the [[Curation request form>>https://nettskjema.no/a/277393#/]].,
234 -and you will be contacted by e-mail with further instructions.
180 +If you want to add a new version to an already curated software, please request this via the [[curation request form>>https://nettskjema.no/a/277393]].
235 235  
236 -==== 5. Provide a reference dataset ====
182 +For more information, visit our [[Guide to Software Curation in the EBRAINS Knowledge Graph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] or see our infographic below.
237 237  
238 -Once you're ready to publish your model entry in the EBRAINS Knowledge Graph,
239 -we encourage you to provide a dataset containing the simulation results produced by your model,
240 -following the process under "Step by step - Data" above.
184 +[[[[image:Thumb.png||alt="EBRAINS-Share-Software.pdf" height="155" style="float:left" width="106"]]>>attach:EBRAINS-Share-Software.pdf]]
241 241  
242 -These reference data will be linked to the model, and will be helpful to anyone trying to
243 -reuse your model.
244 244  
245 -We will soon introduce a "Reproducible" badge for all models that include a reference dataset,
246 -and whose simulation results can be reproduced by an EBRAINS curator.
247 247  
248 -==== 6. Request publication, preview and publish ====
188 +==== //Software curation at a glance// ====
249 249  
250 -Until you request your model entry to be published in the EBRAINS Knowledge Graph,
251 -only members of the collab will be able to view the model entry, in the Model Catalog app
252 -or using the Model Validation Python client.
253 253  
254 -After publication, the model will appear in the [[EBRAINS public search results>>https://search.kg.ebrains.eu/?category=Model||rel="noopener noreferrer" target="_blank"]], and will receive a DOI.
255 255  
256 -To request publication, [[contact EBRAINS support>>https://ebrains.eu/support||rel="noopener noreferrer" target="_blank"]], providing the collab name and the model name or ID.
257 257  
193 +----
258 258  
259 -Curators will then perform a number of checks:
195 +== **The openMINDS metadata framework** ==
260 260  
261 -1. Does the model description provide sufficient context to understand the purpose and use of the model?
262 -1. Does the code repository contain a licence file, explaining the conditions for reusing the code?
263 -1. Does the model have a clearly defined version identifier (e.g. v1.0)? For models in a Git repository, the version identifier should match the name of a tag or release.
197 +openMINDS (open Metadata Initiative for Neuroscience Data Structures) is a community-driven, open-source metadata framework for graph database systems, such as the EBRAINS Knowledge Graph. It is composed of linked metadata models, libraries of serviceable metadata instances, and supportive tooling ([[openMINDS Python>>url:https://pypi.org/project/openMINDS/]], openMINDS Matlab). For exploring the openMINDS schemas, go to the [[HTML documentation>>url:https://humanbrainproject.github.io/openMINDS/]]. For a full overview of the framework, go to [[the openMINDS collab>>url:https://wiki.ebrains.eu/bin/view/Collabs/openminds/]] or the [[GitHub repository>>https://github.com/HumanBrainProject/openMINDS]].
264 264  
265 -The curators will also take a snapshot of your model code.
199 +For feedback, requests, or contributions, please get in touch with the openMINDS development team via
266 266  
267 -* For models in public Git repositories, we archive a copy of the repository in [[Software Heritage>>https://www.softwareheritage.org/||rel="noopener noreferrer" target="_blank"]].
268 -* For models in a collab Bucket or Drive, we make a read-only copy of the code in a public container in the EBRAINS repository.
201 +* the support-email: [[openminds@ebrains.eu>>path:mailto:openminds@ebrains.eu]]
202 +* the [[GitHub issue tracker>>url:https://github.com/HumanBrainProject/openMINDS/issues]]
203 +* the INCF NeuroStars [[openMINDS Community Forum>>url:https://neurostars.org/t/openminds-community-forum-virtual/20156]]
269 269  
270 -Once this is done, you will be invited to review a preview of how the model entry will appear in the KG Search,
271 -and will have the opportunity to request modifications prior to approval and publication.
272 -
273 273  ----
274 274  
275 -=== Step by Step - Software ===
207 +== **The curation team: meet the curators** ==
276 276  
209 +The EBRAINS curators help researchers publish their research using the EBRAINS Research Infrastructure. A curator’s job is similar to the job of an editor of a scientific journal, checking the data is organized, understandable, accessible and sufficiently described.
277 277  
278 -(% class="box floatinginfobox" id="software-curation-infographic" %)
279 -(((
280 -(% style="text-align:center" %)
281 -//Software curation at a glance//
282 -// //
283 -[[[[image:Thumb2.png||alt="EBRAINS-Share-Software.pdf" height="287" width="197"]]>>attach:EBRAINS-Share-Software-4.pdf]]
284 -)))
211 +The curators in EBRAINS are located in Oslo, Jülich, Trier and Paris. 
212 +
285 285  
286 -(% style="margin-left:15px" %)[[[[image:Screenshot 2023-06-06 1122082.png||alt="swc-flow.png" height="136" width="637"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]]
214 +**Located in Norway:**
287 287  
288 -1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions, you will find the links to your software and software version entries in the Knowledge Graph.
289 -1. Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary.
290 -1. After a quality check, we integrate and publish the information to the Knowledge Graph. Your software is then searchable and usable for the neuroscience community.
216 +|(% style="width:303px" %)(((
217 +[[image:My project2.jpg||height="209" width="167"]]
291 291  
292 -If you want to add a new version to an already curated software, please request this via the [[curation request form>>https://nettskjema.no/a/277393]].
219 +**Archana Golla**
293 293  
294 -For more information, visit our [[Guide to Software Curation in the EBRAINS Knowledge Graph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] or see our infographic on the right.
221 +(% class="small" %)Curation Scientist
222 +Neuroscience (PhD)(%%)
223 +(% class="small" style="color:#4a5568" %)**Behavioral neuroscience and microscopy**
224 +)))|(% style="width:303px" %)(((
225 +[[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]]
295 295  
227 +**Camilla H. Blixhavn**
296 296  
297 -----
229 +(% class="small" %)Curation Scientist,
230 +Phd Student
231 +Neuroscience (M. Sc.)(%%)
232 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and data integration**
233 +)))|(% style="width:303px" %)(((
234 +[[image:My project (1).jpg||height="209" width="167"]]
298 298  
299 -=== Sharing human subject data ===
236 +**Ingrid Reiten**
300 300  
301 -(% class="box floatinginfobox" %)
302 -(((
303 -**Human subject data that can be shared on EBRAINS:**
304 -// //
305 -// - Post-mortem data//
306 -// - Aggregated data//
307 -// - Strongly pseudonymized or de-identified subject data//
308 -// with a legal basis for sharing (e.g. Informed Consent)//
309 -// //
238 +(% class="small" %)Curation Scientist,
239 +Phd Student
240 +Neuroscience (M. Sc.)(%%)
241 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and structural connectivity**
242 +)))|(% style="width:303px" %)(((
243 +[[image:My project1.jpg||height="209" width="167"]]
310 310  
311 -(% class="small" %)
312 -//If you have human data that does not qualify as any of the above,//
313 -//please [[get in touch>>https://www.ebrains.eu/contact/]] and we will clarify the available options.//
245 +**Sophia Pieschnik**
246 +
247 +(% class="small" %)Curation Scientist
248 +Neurocognitive Psychology (M. Sc.)(%%)
249 +(% class="small" style="color:#4a5568" %)**Neuroimaging **
314 314  )))
315 315  
252 +|(% style="width:303px" %)(((
253 +[[image:My project.jpg||height="209" width="167"]]
316 316  
317 -Human subject data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]].
255 +**Heidi Kleven**
318 318  
319 -Post-mortem and aggregated human data can be shared openly, given direct identifiers in the metadata are removed. Strongly pseudonymized and de-identified data can be shared via the Human Data Gateway (HDG).
257 +(% class="small" %)Curation Scientist,
258 +Phd Student
259 +Neuroscience (M. Sc.)(%%)
260 +(% class="small" style="color:#4a5568" %)**Neuroanatomy and brain atlases**
261 +)))| | |
320 320  
321 -The Human Data Gateway (HDG) was introduced in February 2021 as a response to the needs of multiple data providers who are bringing human subject data to EBRAINS. HDG covers the sharing of strongly pseudonymized or de-identified data, a limited range human subject data without direct identifiers and with very few indirect identifiers.
263 +
264 +\\**Located in Germany:**
322 322  
323 -The HDG adds an an authentication layer on top of the data. This means that **data users **must request access to the data (via their EBRAINS account) and will receive access provided they actively accept the [[EBRAINS Access Policy>>https://ebrains.eu/terms#access-policy]], the [[EBRAINS General Terms of Use>>https://ebrains.eu/terms#general-terms-of-use]], and the [[EBRAINS Data Use Agreement>>https://ebrains.eu/terms#data-use-agreement]]. The account holder also have to accept that information about their request and access to specific data under HDG is being tracked and stored. **Data owners** must be aware that sharing under the HDG affects the legal responsibilities for the data. They must agree to joint control of the data (see the [[Data Provision Protocol v1>>url:https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]], section 1.4 - 1.5) and the Data Protection Officers of the responsible institutions must have accepted that the data can be shared under HDG.
266 +|(% style="width:303px" %)(((
267 +[[image:My project (2).jpg||height="209" width="167"]]
324 324  
325 -The HDG is an extension of the existing services and does not replace the future EBRAINS Service for sensitive data (planned for 2024) which is outside the domain of the current EBRAINS Data and Knowledge services.
269 +**Jan Gündling**
326 326  
327 -----
271 +(% class="small" %)Curation Scientist,
272 +Phd Student
273 +Sensors and Cognitive Psychology (M. Sc.)(%%)
274 +(% class="small" style="color:#4a5568" %)**Human-Computer Interaction**
275 +)))|(% style="width:303px" %)(((
276 +
328 328  
329 -== **The openMINDS metadata framework** ==
330 330  
331 -(% class="box floatinginfobox" %)
332 -(((
333 -[[[[image:https://github.com/HumanBrainProject/openMINDS/raw/main/img/light_openMINDS-logo.png||alt="openMINDS logo" height="87" width="164"]]>>https://github.com/HumanBrainProject/openMINDS]]
334 -)))
335 335  
336 -openMINDS (open Metadata Initiative for Neuroscience Data Structures) is a community-driven, open-source metadata framework for graph database systems, such as the EBRAINS Knowledge Graph. It is composed of linked metadata models, libraries of serviceable metadata instances, and supportive tooling ([[openMINDS Python>>url:https://pypi.org/project/openMINDS/]], openMINDS Matlab). For exploring the openMINDS schemas, go to the [[HTML documentation>>url:https://humanbrainproject.github.io/openMINDS/]]. For a full overview of the framework, go to [[the openMINDS collab>>url:https://wiki.ebrains.eu/bin/view/Collabs/openminds/]] or the [[GitHub repository>>https://github.com/HumanBrainProject/openMINDS]].
337 337  
338 -For feedback, requests, or contributions, please get in touch with the openMINDS development team via
339 339  
340 -* the support-email: [[openminds@ebrains.eu>>path:mailto:openminds@ebrains.eu]]
341 -* the [[GitHub issue tracker>>url:https://github.com/HumanBrainProject/openMINDS/issues]]
342 -* the INCF NeuroStars [[openMINDS Community Forum>>url:https://neurostars.org/t/openminds-community-forum-virtual/20156]]
343 343  
344 -----
345 345  
346 -== **Add practical value to your shared data, model or software** ==
347 347  
348 348  
349 -=== **Showcase shared data, models or software in other services** ===
350 350  
351 -Below is a list of additional services that data, models or software shared via EBRAINS can benefit from. EBRAINS is continuously looking to increase the number of interoperable services.
352 352  
288 +**Lyuba Zehl**
353 353  
354 -|(% colspan="2" %)**Viewer for 2D images**
355 -|[[image:MIO_screenshot.PNG]]|Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].
356 -|(% colspan="2" %)**Viewer for sequential atlas-registered 2D images with annotation options**
357 -|[[image:LZ_screenshot.PNG]]|Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].
358 -|(% colspan="2" %)**Interactive 3D atlas viewer with options for data visualization**
359 -|[[image:3Datlas_screenshot.PNG]]|Upload your data to the //Siibra-explorer//: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to register your data to atlases, read about the [[Atlas services on ebrains.eu>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]].
360 -|(% colspan="2" %)**Use your research product in an interactive publication**
361 -|[[image:LivePaper_screenshot.PNG]]|Add your data, models or software to a// Live paper. //Read more about [[Live papers on ebrains.eu>>https://www.ebrains.eu/data/live-papers/live-papers]].
290 +(% class="small" %)Knowledge Systems Engineer
291 +Dr. rer. nat. (Systems Neuroscience)(%%)
292 +(% class="small" style="color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
293 +)))|(% style="width:303px" %) |
362 362  
363 363  ----
364 364  
297 +== **Add practical value to your shared data, model or software** ==
298 +
299 +
365 365  ==== **Add a tutorial or learning resource ** ====
366 366  
367 367  (% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %)
368 -(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
303 +(% style="color:#000000" %)//More information will follow//
369 369  
370 370  
371 371  ==== **Create a workflow** ====
372 372  
373 373  (% class="wikigeneratedid" id="H-Workflows5Binformation5D" %)
374 -(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow//
309 +(% style="color:#000000" %)//More information will follow//
375 375  
376 376  ----
377 377  
378 -== **General benefits of sharing data ** ==
313 +=== **Showcase shared data, models or software in other services** ===
379 379  
380 -By sharing your data via EBRAINS, you gain access to the following benefits:
315 +Below is a list of additional services that data, models or software shared via EBRAINS can benefit from. EBRAINS is continuously looking to increase the number of interoperable services.
381 381  
382 -[[image:image-20230324170841-3.png]]
317 +**Viewer for 2D images **
383 383  
319 +* Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]].
384 384  
321 +**Viewer for sequential atlas-registered 2D images with annotation options**
385 385  
386 -We support you to better follow the [[FAIR^^ ^^guiding principles>>https://www.nature.com/articles/sdata201618]] for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.  Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product.
323 +* Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]].
387 387  
388 -----
325 +**Use your research product in an interactive publication **
389 389  
390 -== **Frequently asked questions ** ==
327 +* Add your data, models or software to a// Live paper. //Read more about [[Live papers on ebrains.eu>>https://www.ebrains.eu/data/live-papers/live-papers]].
391 391  
392 ->Is the curation process time consuming and difficult?
329 +**Interactive 3D atlas viewer with options for data visualization**
393 393  
394 -No, if communication is on a regular basis, we are able to finish curation within two weeks. Publishing your data naturally takes some effort but we will support you as much as possible.
331 +* Upload your data to //the Siibra//-explorer: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to register your data to atlases, read about the [[Atlas services on ebrains.eu>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]].
395 395  
396 ->Is sharing my data also beneficial for me or only for others?
333 +----
397 397  
398 -When you publish your data via EBRAINS, we provide comprehensive data management support and safe long term storage - all free of charge. Additionally, your data can be cited, just like a scientific journal article. Sharing your data may even lead to new funding opportunities. Many funders specifically support projects that are part of the “Open Science” initiative.
335 +=== **The benefits of sharing data ** ===
399 399  
400 ->Can my data be too insignificant to share?
337 +By sharing your data via EBRAINS, you gain access to the following benefits:
401 401  
402 -No, there is no such thing as insignificant data. Data that is considered insignificant for a given topic, may have great significance for another. By making “insignificant” data publicly available, other researchers may find something interesting that was off-topic for your own purposes.
339 +[[image:image-20230324170841-3.png]]
403 403  
404 ->Can my data be easily misused if I share it?
405 405  
406 -No, your data will be covered by a Creative Commons license of your choice. There are a variety of licenses available, enabling you to prevent use for specific purposes, e.g. commercial use.
407 407  
408 ->Can I share my data before my paper is published?
343 +We support you to better follow the [[FAIR^^ ^^guiding principles>>https://www.nature.com/articles/sdata201618]] for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.  Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product.
409 409  
410 -Yes, if you do not want to share your data before publishing the results in an article, you can publish your dataset with an embargo status. This will make it possible to find information about the data without making the data itself available, and give you a citeable DOI.
411 -
412 ->Can I lose my competitive edge if I share my data before I publish the associated paper?
413 -
414 -No, publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data.
415 -
416 -
417 417  ----
418 418  
419 -== (% style="color:#1a202c; font-family:inherit; font-size:29px" %)**The curation team: meet the curators**(%%) ==
347 +=== **Frequently asked questions ** ===
420 420  
421 -The EBRAINS curators help researchers publish their research using the EBRAINS Research Infrastructure. A curator’s job is similar to the job of an editor of a scientific journal, checking the data is organized, understandable, accessible and sufficiently described.
349 +(((
350 +==== ====
422 422  
423 -The curators in EBRAINS are located in Oslo, Jülich, Trier and Paris. 
424 -
352 +(((
353 +>The curation process is time consuming and difficult
354 +)))
355 +)))
425 425  
426 -**Located in Norway**
357 +(% class="wikigeneratedid" id="HHowcanIshareA0models3F" %)
358 +Publishing your data naturally takes some time and effort but we will support you as much as possible. If communication is on a regular basis, we are able to finish basic curation - from the initial contact to dataset release - within two weeks.
427 427  
428 -|(% style="width:303px" %)(((
429 -[[image:My project2.jpg||height="209" width="167"]]
360 +>Sharing my data is not beneficial for me - only for others
430 430  
431 -**Archana Golla**
432 432  
433 -(% class="small" %)Curation Scientist
434 -Neuroscience (PhD)(%%)
435 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Behavioral neuroscience and microscopy**
436 -)))|(% style="width:303px" %)(((
437 -[[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]]
363 +When you publish your data via EBRAINS, we provide comprehensive data management support and safe long term storage - all free of charge. Additionally, your data can be cited, just like a scientific journal article. Sharing your data may even lead to new funding opportunities. Many funders specifically support projects that are part of the “Open Science” initiative.
438 438  
439 -**Camilla H. Blixhavn**
365 +>My data is too insignificant to share
440 440  
441 -(% class="small" %)Curation Scientist,
442 -Phd Student
443 -Neuroscience (M. Sc.)(%%)
444 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and data integration**
445 -)))|(% style="width:303px" %)(((
446 -[[image:My project (1).jpg||height="209" width="167"]]
447 447  
448 -**Ingrid Reiten**
368 +There is no such thing as insignificant data. Data that is considered insignificant for a given topic, may have great significance for another. By making “insignificant” data publicly available, other researchers may find something interesting that was off-topic for your own purposes.
449 449  
450 -(% class="small" %)Curation Scientist,
451 -Phd Student
452 -Neuroscience (M. Sc.)(%%)
453 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and structural connectivity**
454 -)))|(% style="width:303px" %)(((
455 -[[image:My project1.jpg||height="209" width="167"]]
370 +>My data can easily be misused if I share it with the world
456 456  
457 -**Sophia Pieschnik**
458 458  
459 -(% class="small" %)Curation Scientist
460 -Neurocognitive Psychology (M. Sc.)(%%)
461 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroimaging **
462 -)))
373 +Your data will be covered by a Creative Commons license of your choice. There are a variety of licenses available, enabling you to prevent use for specific purposes, e.g. commercial use.
463 463  
464 -|(% style="width:303px" %)(((
465 -[[image:My project.jpg||height="209" width="167"]]
375 +>I don't think I'm allowed to share my data
466 466  
467 -**Heidi Kleven**
468 468  
469 -(% class="small" %)Curation Scientist,
470 -Phd Student
471 -Neuroscience (M. Sc.)(%%)
472 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and brain atlases**
473 -)))| | |
378 +Many institutions are still very careful about what can be shared and how, but the situation is constantly evolving. As a researcher providing data, you will be asked to fill out an ethics compliance survey which survey to ensure that data published through the EBRAINS platform has been collected according to EU regulations. We are working on solutions for sharing anonymised human data that complies with GDPR standards to protect the identity of research subjects.
474 474  
475 -
476 -\\**Located in Germany**
380 +>I can't share my data before my paper is published
477 477  
478 -|(% style="width:303px" %)(((
479 -[[image:My project (2).jpg||height="209" width="167"]]
480 480  
481 -**Jan Gündling**
383 +If you do not want to share your data before publishing the results in an article, you can publish your dataset with an embargo status. This will make it possible to find information about the data without making the data itself available, and give you a citeable DOI.
482 482  
483 -(% class="small" %)Curation Scientist,
484 -Phd Student
485 -Sensors and Cognitive Psychology (M. Sc.)(%%)
486 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Human-Computer Interaction**
487 -)))|(% style="width:303px" %)(((
488 -[[image:Lyuba.jpg||height="209" width="167"]]
385 +>If I share my data before I publish the associated paper, I will lose my competitive edge
489 489  
490 -**Lyuba Zehl**
491 491  
492 -(% class="small" %)Knowledge Systems Engineer
493 -Dr. rer. nat. (Systems Neuroscience)(%%)
494 -(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis**
495 -)))|(% style="width:303px" %) |(% style="width:303px" %)
388 +Publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data.
496 496  
497 -----
498 498  
499 -
500 -
501 501  ----
502 502  
503 503  == Contact ==
... ... @@ -504,16 +504,9 @@
504 504  
505 505  [[curation-support@ebrains.eu>>mailto:curation-support@ebrains.eu]]
506 506  
507 -----
508 508  
509 -== Affiliated laboratories ==
510 -
511 -//Institute of Basic Medical Sciences,** **University of Oslo, Norway (PI: Jan G. Bjaalie, Trygve B. Leergaard)//
512 -
513 -//Institute of Neuroscience and Medicine (INM-1), Research Centre Jülich, Germany (PI: Timo Dicksheid)//
514 -
515 -----
516 -
517 -== References ==
518 -
519 519  {{putFootnotes/}}
399 +~)~)~)~)~)~)
400 +~)~)~)
401 +~)~)~)~)~)~)~)~)~)
402 +~)~)~)~)~)~)
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