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... ... @@ -1,90 +1,132 @@ 1 -== Publishing data, models and software via EBRAINS == 1 +{{html clean="false"}} 2 +<div style="float:right;margin-left:1em;margin-bottom:1em"> 3 + <form title="Search in this collab" target="_blank" action="https://wiki.ebrains.eu/bin/view/Main/Search"> 4 + <input type="hidden" name="sort" value="score"> 5 + <input type="hidden" name="sortOrder" value="desc"> 6 + <input type="hidden" name="highlight" value="true"> 7 + <input type="hidden" name="facet" value="true"> 8 + <input type="hidden" name="r" value="1"> 9 + <input type="hidden" name="f_locale" value="en"> 10 + <input type="hidden" name="f_space_facet" value="1/Collabs.test-ir2."> 11 + <input type="hidden" name="l_space_facet" value="100"> 12 + <input type="hidden" name="f_type" value="DOCUMENT"> 13 + <input type="text" name="text" placeholder="Search here..." size="25" id="searchbox" /> 14 + <input type="submit" value="🔎︎" id="submit"/> 15 + </form> 16 +</div> 17 +{{/html}} 2 2 3 -The aim of this collab is to provide you with all the information you need to publish your experimental data, simulations, computational models, and software via EBRAINS. Have you already published your data somewhere else? You can increase the exposure and impact of your shared dataset by also listing it on EBRAINS. 4 4 20 +(% class="wikigeneratedid" id="HPublishingneurosciencedata2CmodelsandsoftwareviaEBRAINS" %) 21 +(% style="font-size:2em" %)**Publishing neuroscience data, models and software via EBRAINS** 22 + 23 +(% class="wikigeneratedid" %) 24 +The aim of this collab is to provide you with detailed information about publishing data, simulations, computational models, and software via EBRAINS. If you want a quick overview of the sharing process, see [[https:~~/~~/ebrains.eu/service/share-data>>https://ebrains.eu/service/share-data]]. 25 + 5 5 {{box title="**Contents**"}} 6 6 {{toc depth="3" start="2"/}} 7 7 {{/box}} 8 8 30 +== **Information to get started** == 9 9 10 -(% style="text-align: center;" %) 11 -**Get started! ** 32 +**[[REQUEST CURATION>>https://nettskjema.no/a/277393#/]] to share data, simulations, computational models, and software, - or to add a new version of an existing one. ** 12 12 13 -(% style="text-align: center;" %) 14 -**[[REQUEST CURATION>>https://nettskjema.no/a/277393#/]] ** 34 +Have you already published your data somewhere else? You can increase the exposure and impact of your shared dataset by also listing it on EBRAINS. 15 15 16 -(% style="text-align: center;" %) 17 - Search existing data, models and software in [[the EBRAINS Knowledge Graph Search>>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]] 18 18 19 ----- 37 +(% class="box" style="text-align: center; font-size: 1.2em" %) 38 +((( 39 +Search existing data, models and software in the [[EBRAINS Knowledge Graph>>https://kg.ebrains.eu/search/?facet_type[0]=Dataset]] 40 +))) 20 20 21 -=== **All neuroscience data are welcome** === 22 22 23 - (%class="wikigeneratedid"id="H"%)24 - [[image:image-20230324170829-2.png]]43 +EBRAINS accepts data from all modalities and from all species, as well as models, software, web services and metadata models (collectively referred to as research products) for sharing. You'll find detailed information about how to share each research product below. 44 + 25 25 26 ----- 46 +(% class="box infomessage" %) 47 +((( 48 +We strongly recommend to **start preparing for data sharing as early as possible**. With a structured data repository and adequate notes on how the data was acquired, you greatly minimize the effort required to publish your data. The time it takes to share data on EBRAINS heavily depends on on the engagement from the researcher and how well the data and metadata is prepared before-hand. Contact us for personalised guidance on how to prepare for sharing. 49 +))) 27 27 28 -=== **Benefits of sharing data ** === 51 +(% class="box successmessage" %) 52 +((( 53 +**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases. Reach us at [[curation-support@ebrains.eu>>mailto:curation-support@ebrains.eu]] 54 +))) 29 29 30 - By sharing your data via EBRAINS, you gain access to the following benefits:56 +---- 31 31 32 - [[image:image-20230324170841-3.png]]58 +== **The EBRAINS curation process** == 33 33 60 +In EBRAINS, multimodal and heterogenous neuroscience data, models and software are categorised and described in a standardised manner so that they can be effectively searched, compared, and analysed. This effort is referred to as curation. 34 34 62 +>The EBRAINS curation process involves organising and annotating neuroscientific data to make the data discoverable and reusable. 35 35 36 - We support you to betterfollowtheFAIR^^^^guiding principlesfor data managementandstewardship{{footnote}}Wilkinson,M., Dumontier,M., Aalbersberg,I. etal. The FAIRGuiding Principlesscientificdatamanagementandstewardship. SciData3,160018(2016).https://doi.org/10.1038/sdata.2016.18 {{/footnote}}.64 +Behind this process is the EBRAINS Curation team. Our mandate is to support you in sharing your data in line with the [[**FAIR principles**>>https://www.go-fair.org/fair-principles/]], whether you choose to describe only the key aspects of your data, or can invest in adding more detailed metadata. 37 37 38 --- --66 +Curated data, models and software are made available in [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and the [[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadata schemas defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]].Data and models are linked to and discoverable via the species-specific [[EBRAINS siibra atlas viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]]. 39 39 40 - == **What iscuration?**==68 +The curation of data, models and software is different. Thus, below we explain the process for sharing for each research product separately. 41 41 42 ->The EBRAINS data curation process involves organising and annotating neuroscientific data to make the data discoverable and reusable. 43 43 44 - Neuroscience data are multimodal, heterogenous, and organised in different ways. All these diverse data need to be categorised and described in a standardised manner so that they can be effectively searched, compared, and analysed by using the integrated tools and workflows on the EBRAINS platform. This effort is referred to as curation.71 +---- 45 45 73 +=== Step by step - Data === 46 46 47 -Curated data, models and code are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. 48 48 76 +[[image:image-20230326054341-1.png]] 49 49 50 -(% style="color:#e74c3c" %)Their comparability and 78 +(% class="box floatinginfobox" id="share-data-infographic" %) 79 +((( 80 +(% style="text-align:center" %) 81 +//Download our infographic// 82 +//with all you need to know// 83 +//to share data on EBRAINS: // 84 +// // 85 +[[[[image:image-20230324171114-2.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]] 86 +))) 51 51 52 -(% style="color:#e74c3c" %)Sharing your data, models or code (research products) via EBRAINS makes it discoverable amongst other research products available in (%%)[[(% style="color:#e74c3c" %)the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]](%%). This is made possible by the highly flexible metadata framework describing neuroscience data in detail, [[(% style="color:#e74c3c" %)openMINDS>>https://github.com/HumanBrainProject/openMINDS]](%%). EBRAINS is gradually implementing interconnected tools and analysis workflows developed in the Human Brain Project (HBP) to further enhance the output from adding your dataset to the database. 53 53 54 - ----89 +==== **1. Provide some general information about your dataset** ==== 55 55 56 -== **The data curation process** == 57 57 58 -Our mandate is to support you in sharing your data in line with the [[**FAIR principles**>>https://www.go-fair.org/fair-principles/]], whether you choose to describe only the key aspects of your data, or can invest in adding more detailed metadata. Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product. 59 59 93 +(% style="margin-right:10px" %)[[image:https://lh3.googleusercontent.com/zh7TvO6w04YGW9jIhfhmdT6CexdGs-AWOLfJXKRq7-tdHOu6ar1rOQx8o4rZevrjXqgPZ7-Ejv4b6X9XpgXuHpdUXi-mBTHIUnv5Vz-DktHt0sP-PZ3gE8XgZid3TV3swV1uTCBhHx11ge0pjP7RVxswGQ=s2048||height="85px;" width="91px;"]](%%)** Fill in the [[Curation request form>>https://nettskjema.no/a/277393#/]]. ** 60 60 61 - Data,modelsand codeeintegratedinto the [[EBRAINSKnowledge Graph>>url:https://kg.ebrains.eu/]] byusinginteroperablemetadataschemasasdefined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]]. This makesthe data andmetadata discoverableinthe[[KG Search>>url:https://search.kg.ebrains.eu/]]andprogrammatically viathe [[KG API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]].95 +This form collects preliminary information about your data, allowing us to assess whether the dataset fits within the scope of EBRAINS. The submission generates a curation ID allowing us to track the case. 62 62 63 -Data and models are linked to and discoverable via the species-specific [[EBRAINS Interactive Atlas Viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]]. 64 64 98 +(% style="margin-right:10px" %)[[image:https://lh6.googleusercontent.com/yw442oS6BwZOlY-_0BoVxyCW3DrdcJ5ogCes92iOD16_rgNEVk56aNMDaVWXFfBLYv24bHzmGgBF9wg0szjH70xzuRTqxoQAeuy3knNO7axCHoyZDXwtyTcMgFnYwbOYxOT29LK-zchrUKLW6Mle93kOkQ=s2048||height="94px;" width="94px;"]](%%)**Fill in the [[Ethics and Regulatory compliance form>>https://nettskjema.no/a/224765]]**. 65 65 66 -Th e time it takestosharedataon EBRAINS heavily dependson ontheengagement from the researcherand how well the data andmetadatais prepared before-hand.We strongly recommendto start preparingfordatasharingasearly as possible. With a structured data repositoryand adequate notes onhow thedatawas acquired,you greatly minimizetheeffortrequired to publishyourdata. **Wanttolearnmore abouthow to Prepare to Share?**Contactus!100 +This form collects the necessary information needed for us to evaluate whether we can ethically and legally share the data via EBRAINS. 67 67 68 - ===Stepbystep-Experimentaldata===102 +See below for information about the ethical and legal aspects concerning sharing of human subject data. 69 69 70 70 71 - [[image:image-20230326054341-1.png]]105 +==== **2. Upload data ** ==== 72 72 73 -==== **1. Provide some general information about your dataset** ==== 107 +(% class="box floatinginfobox" id="share-data-infographic" %) 108 +((( 109 +(% style="text-align:center" %) 110 +//Download our infographic// 111 +//with guidelines 112 +on data organization: // 74 74 75 -The [[Curation request form>>https://nettskjema.no/a/277393#/]] collects preliminary information about your data, allowing us to assess whether the dataset fits within the scope of EBRAINS. The submission generates a curation ID allowing us to track the case. 114 +(% style="text-align:center" %) 115 +[[[[image:image-20230621121014-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/lib/f5cf4964-f095-49bd-8c34-e4ffda05a497/file/ebrains-infographic-data-organisation.pdf/]] 116 +))) 76 76 77 - The[[Ethicsd Regulatory complianceform>>https://nettskjema.no/a/224765]] collectsthe necessary information needed for ustoevaluatewhetherwe canafelyandlegallysharetheataonheEBRAINSplatforms.118 +(% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/sieKO-kW8O18iPaUyonwyo4UfHBmtc2E9BDnjbx52j6J_uGmm-OzGAo7sloMk3sYwKa6QW3hYQsOA9N4H7uGQpca088Wrk0Nurpt_J3B0-NSbcaPNdZIh21otQcG6jnAxLGiKoEvkTyaDGTMk3fu7me8mQ=s2048||height="94px;" width="94px;"]](%%)**Ensure data is structured consistently prior to upload. ** 78 78 120 +We look for organized data, not organized according to our standard. This is to support the broadest degree of sharing possible. We do however require that the data is organized in a consistent and precise manner. Please see our// //[[guidelines on data organization>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] for further guidance. 79 79 80 -=== =**2.Upload data **====122 +(% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/EWtYwfVlbeC-jqPasgmzidqc50GrkKIEgwXeUeql8aaMHIukmFdWEy0nufVWWATbxDDK3XwwZEDmASrbpCsBk1u0HpAd8x4ZgAMsMPRcWyrb9etlV6FgKE_QN2e6SqKxHE0rzkR8uI1rRW_5z21TFGYVnw=s2048||height="91px;" width="91px;"]](%%)**Upload data to EBRAINS Storage, either using a drag-and-drop solution (opt. 1) or an interactive python script (opt. 2).** 81 81 82 - EBRAINSofferssecure,long-termstorageat[[CSCS SwissNationalSupercomputingCentre>>url:https://www.cscs.ch/]], withcurrentlyno upperlimitoforagecapacity.Thedatamustbeconsistentlystructuredpriorto upload.124 +**Opt. 1. **For smaller datasets with a reasonable amount of files, we recommend using the Collab-Bucket solution (drag-and-drop). A Collab Bucket must first be assigned to a dataset, which happens when a datasets is accepted for sharing. 83 83 84 -For smaller datasets with a reasonableamount of files, we recommend using the**Collab-Bucket solution (drag-and-drop)**. A Collab Bucketmustfirstbessignedtoadataset,whichhappenswhen adatasetsisacceptedforsharing.126 +**Opt. 2. **For larger datasets or datasets with a large amount of files, we recommend using a programmatic approach. The [[python script>>https://github.com/eapapp/ebrains-data-storage/tree/main/data-proxy]] is interactive and does not require any additional programming. 85 85 86 -For larger datasets or datasets with a large amount of files, we recommend using a **programmatic approach**. The [[python script>>https://github.com/eapapp/ebrains-data-storage/tree/main/data-proxy]] is interactive and does not require any additional programming. 87 87 129 +EBRAINS offers secure, long-term storage at [[CSCS Swiss National Supercomputing Centre>>url:https://www.cscs.ch/]], with currently no upper limit of storage capacity. 88 88 89 89 If a data collection is already uploaded elsewhere, we may link to the already existing repository. 90 90 ... ... @@ -91,168 +91,375 @@ 91 91 92 92 ==== **3. Submit metadata** ==== 93 93 94 -Easily submit openMINDS-compatible metadata via our [[metadata wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. This form covers all the required metadata for sharing data via EBRAINS. When you're ready to 'Submit', the metadata and all uploaded files will be sent to the Curation team. 95 95 96 - Forpower-usersinterestedinexploringthefullspanoftheopenMINDSframework, please check out the [[openMINDS GitHub>>https://github.com/HumanBrainProject/openMINDS]] to learn moreabouthowoprogrammatically gatheryourmetadata.Astable versionoftheopenMINDSpackage canbe found on [[PyPi>>https://pypi.org/project/openMINDS/]]. Weaccept openMINDSmetadataas JSON-LD (share thesewith us viacuration-support@ebrains.eu).Additional documentationofopenMINDSmetadata submodulesandschemascanbe foundon [[theopenMINDSGitHub Wiki>>https://humanbrainproject.github.io/openMINDS/]].137 +(% style="margin-right:10px" %)[[image:https://lh5.googleusercontent.com/WS4T2LhF9znWWChn3Z550agLrrb-KTWdYVsJSv0lh4cGjKbjuN1WV68WER9xkYqi1UqN7KYZz7bImYz3_TpOuTuvma7T192QUiUZoyJVPk1fj5NSDSQh_kpIeBufAOdDtsDRpPKK_P5EDPqRCTAaOTNyCw=s2048||height="91px;" width="91px;"]](%%)**Submit metadata using the **[[EBRAINS Metadata Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]** (opt. 1), or directly via the Knowledge Graph (opt. 2) ** 97 97 139 +**Opt. 1.** Manually submit the minimal required metadata via the [[EBRAINS Metadata Wizard>>https://ebrains-metadata-wizard.apps.hbp.eu/]]. The minimal required metadata covers extended bibliographic information necessary to publish your dataset on EBRAINS. The submitted information, including uploaded files, will be sent to the Curation team automatically 98 98 99 - ====**4. Write aDataDescriptor**====141 +**Opt. 2.** To go beyond the minimal required metadata, you can directly interact with the Knowledge Graph (KG) in your private space. Within the private space, you can upload metadata and interact with them, moreover you can connect your metadata to existing publicly accessible entries. Access to your private space is granted upon the initiation of the curation process. You can access your private space via: 100 100 143 +* Knowledge Graph Editor: This User Interface allows you to manually enter metadata into your KG space and validate metadata that are programmatically uploaded. The Editor contains a basic set of openMINDS metadata templates, but can be extended to the full openMINDS metadata model on request. Access is granted once the request is accepted. 144 +* [[Fairgraph>>https://fairgraph.readthedocs.io/en/stable/]]: This is the recommended software tool for programmatic interaction with the KG. It allows you to programmatically upload openMINDS compliant metadata into your KG space and interact with existing metadata. 145 +* [[KG Core Python SDK>>https://github.com/HumanBrainProject/kg-core-sdks]]: This python package gives you full freedom in interacting with he KG. It allows you to upload any JSON-LD with metadata into your private space. Note, for dataset publications in EBRAINS, the JSON-LD metadata files have to comply to openMINDS. 146 + 147 +Datasets published through the EBRAINS Knowledge Graph have to be registered using **openMINDS compliant metadata** delivered as JSON-LD files. See this summary table for an overview of [[the minimally required openMINDS properties for publishing>>https://drive.ebrains.eu/lib/47995dbc-f576-4008-a76c-eefbfd818529/file/ebrains-minimum-required-metadata.xlsx]] on EBRAINS. 148 + 149 + 150 +==== **4. Write a Data Descriptor** ==== 151 + 152 + 153 + 154 +(% style="margin-right:10px" %)[[image:https://lh4.googleusercontent.com/lMYEKOXzejbBydOdotWWteXQo7j363xRyntBGjcPZVEdtIU1CJYX7q1STpdr2JPZK4hpWWXk20UlkUOqDGL5kX6vnQVBSdrfUo6EGfXOwpuGq1Uygv0tTZJ0lRO6voJvg56QC2mufvjAcRXGfAKFOjtc6w=s2048||height="94px;" width="94px;"]](%%)**Write a data descriptor by filling in **[[this template>>https://drive.ebrains.eu/f/a2e07c95b1a54090bbbc/?dl=1]]**.** 155 + 101 101 The Data Descriptor is a document helping others interpret and reuse (and prevent misuse) of your data, and is critical to achieve a basic level of FAIR. The document will be uploaded in the repository of the data, shared as a PDF. 102 102 103 - [[Thetemplate>>https://drive.ebrains.eu/f/a2e07c95b1a54090bbbc/?dl=1]]safely guides you through the process of making one. Checkoutprevious examples intheKG Search, e.g.the DataDescriptor fora dataset containing histologyimages of theratbrainstained foran anterograde tracer (see [[an example>>https://doi.org/10.25493/2MX9-3XF]]).158 +See our infographic about the data descriptor for inspiration or guidance. 104 104 160 +Check out previous examples in the KG Search. See e.g., the data descriptor for the dataset "[[Anterogradely labeled axonal projections from the orbitofrontal cortex in rat>>https://doi.org/10.25493/2MX9-3XF]]". 105 105 106 106 Journal publications sufficiently describing the shared data, such as made available through [[Nature Scientific Data>>http://www.nature.com/sdata/about]], [[Elsevier Data in Brief>>http://www.journals.elsevier.com/data-in-brief/]], [[BMC Data note>>https://bmcresnotes.biomedcentral.com/submission-guidelines/preparing-your-manuscript/data-note]] and more, can replace the EBRAINS Data Descriptor. 107 107 108 108 109 -==== **5. Preview and publish ** ==== 165 +(% class="box floatinginfobox" id="data-descriptor-infographic" %) 166 +((( 167 +(% style="text-align:center" %) 168 +//Download our infographic 169 +about the EBRAINS Data// 170 +//Descriptor// 171 +// // 172 +[[[[image:image-20230324171109-1.png||height="150" width="106"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]] 173 +))) 110 110 111 - ACurator will assemble a dataset in the EBRAINS Knowledge Graph that combines the data, metadata and data descriptor.Onceready, the data providerwillreceiveaprivate URL for previewing thedatasetprior to release. We need an official approval from the data custodian{{footnote}}The Data Custodian is responsible for the content and quality of the Data and metadata, and istheperson to be contacted by EBRAINS CS in case of any misconduct related to the Data. It is the obligation of a Data Custodian to keep EBRAINS informed about changes in the contact information of the authors of the Datasets provided by them ([[EBRAINS Data Provision Protocol - version 1.1>>https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]]).{{/footnote}} to release the dataset. Once released, a [[DataCite DOI>>https://datacite.org/]] will be generated for the dataset. If the identical data collection has received a DOI elsewhere, we recommend re-using the already issued DOI.175 +==== **5. Preview and publish** ==== 112 112 113 113 178 +(% style="margin-right:10px" %)[[image:https://lh4.googleusercontent.com/XqT26Q4yWJK26cjtjhI4ToXoZZMxhT9LimG4Hk9mePxy0-KPKgpVIzcuiP5mOQowBgf2JjkrWUq2VbCmafWWZPJplEZALnFOlCZHLlQgzOx7fFwoBteyi_IlMLkPBS9vtOcdNIZ59HyLnQz4RsTQ0lUrSw=s2048||height="91px;" width="91px;"]](%%)**Preview and approve the release of your dataset. ** 179 + 180 +Once a Curator has assembled the dataset in the EBRAINS Knowledge Graph, combining the data, metadata and data descriptor, the data provider will receive a private URL for previewing the dataset prior to release. We need an official approval from the data custodian{{footnote}}The Data Custodian is responsible for the content and quality of the Data and metadata, and is the person to be contacted by EBRAINS CS in case of any misconduct related to the Data. It is the obligation of a Data Custodian to keep EBRAINS informed about changes in the contact information of the authors of the Datasets provided by them ([[EBRAINS Data Provision Protocol - version 1.1>>https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]]).{{/footnote}} to release the dataset. Once released, a [[DataCite DOI>>https://datacite.org/]] will be generated for the dataset. If the identical data collection has received a DOI elsewhere, we recommend re-using the already issued DOI. 181 + 182 + 183 + 184 + 114 114 ---- 115 115 116 -=== =**Sharinghumandata**====187 +=== Step by Step - Models === 117 117 118 -We must ensure data shared on EBRAINS comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]]. 119 119 120 -(% class="box floatinginfobox" %) 121 -((( 122 -For **Human subject data**, the data must be //either// 190 +==== 1. Start early ==== 123 123 124 - -Post-mortemdata192 +It is not necessary to wait until you are ready to publish to register your model with EBRAINS. 125 125 126 -- Aggregated data 194 +By registering a model early in your project, you can take advantage of EBRAINS tools 195 +to keep track of simulations and to share them with your collaborators. 127 127 128 - -Pseudonymizedsubject data with a legalbasisforharing (e.g.Informed Consent)197 +==== 2. Create/choose a Collab workspace ==== 129 129 130 -(% class="small" %)//If you have human data that do not classify as any of the above, please get in touch and we will clarify the available options. // 131 -))) 199 +We use EBRAINS Collaboratory "collab" workspaces to help manage the model curation process. 132 132 133 - PseudonymizeddataissharedviatheHumanDataGateway (HDG)duetoGDPRregulations.TheHDGaddsan authentication layer tothe data.201 +In particular, we use collab membership (the "Team") to control who can view or edit your model metadata prior to publication. 134 134 135 -**Data users** must request access to the data (via their EBRAINS account) and will receive access provided they actively accept the [[EBRAINS Access Policy>>https://ebrains.eu/terms#access-policy]], the [[EBRAINS General Terms of Use>>https://ebrains.eu/terms#general-terms-of-use]], and the [[EBRAINS Data Use Agreement>>https://ebrains.eu/terms#data-use-agreement]]. The account holder also have to accept that information about their request and access to specific data under HDG is being tracked and stored. 136 -\\**Data owners** must be aware that sharing under the HDG affects the legal responsibilities for the data. They must agree to joint control of the data (see the [[Data Provision Protocol v1>>url:https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]], section 1.4 - 1.5) and the Data Protection Officers of the responsible institutions must have accepted that the data can be shared under HDG. 137 -\\**Human Data Gateway, Background** 138 -HDG was introduced in February 2021 and developed across multiple teams in the HBP. The initiative to create the service and the initial design originated from EBRAINS Curation in close collaboration with the Data compliance team and the HBP Data Governance Working Group. HDG is a response to the needs of multiple data providers who are bringing data of human origin to EBRAINS. HDG covers the sharing of a limited range of data of human origin, i.e., data without direct identifiers and with very few indirect identifiers (strongly pseudonymized, de-identified). It is an extension of the existing services and does not replace the future EBRAINS Service for sensitive data (planned for 2024) which is outside the domain of the current EBRAINS Data and Knowledge services. 203 +It is up to you whether you create a new collab for each model, or reuse an existing collab 204 +(it is no problem to have multiple models associated with a single collab). 139 139 206 +Collabs are also useful for storing simulation results, adding documentation for your model, 207 +and/or providing tutorials in Jupyter notebooks. 140 140 209 +==== 3. Upload code ==== 210 + 211 +We recommend storing model code and/or configuration files in an online Git repository, for example on GitHub. 212 +This repository should be public when you publish the model, but a private repository can be used for model development. 213 + 214 +Alternatively, you can upload code to the Collab Drive or Bucket storage. 215 + 216 +==== 4.Submit metadata ==== 217 + 218 +We recommend submitting metadata using the Model Catalog app, installed in your collab. 219 + 220 +To install it: 221 + 222 +1. click the "+ Create" button 223 +1. in the "Create Page" form, add a title, such as "Model Catalog", and select "Community App", then click "Create" 224 +1. scroll down until you find the "Model Catalog" app, click "Select", then "Save & View" 225 + 226 +You will then see a table of all the models and validation tests associated with this collab. 227 +If this is your first time using the app, the table will probably be empty. 228 +To add your model, click "+", fill in the form, then click "Add model". 229 + 230 +As development of your model proceeds, you can easily register new versions of the code, 231 +and new parameterizations, by clicking "Add new version". 232 + 233 +If you prefer not to use the app, you can instead fill in the [[Curation request form>>https://nettskjema.no/a/277393#/]]., 234 +and you will be contacted by e-mail with further instructions. 235 + 236 +==== 5. Provide a reference dataset ==== 237 + 238 +Once you're ready to publish your model entry in the EBRAINS Knowledge Graph, 239 +we encourage you to provide a dataset containing the simulation results produced by your model, 240 +following the process under "Step by step - Data" above. 241 + 242 +These reference data will be linked to the model, and will be helpful to anyone trying to 243 +reuse your model. 244 + 245 +We will soon introduce a "Reproducible" badge for all models that include a reference dataset, 246 +and whose simulation results can be reproduced by an EBRAINS curator. 247 + 248 +==== 6. Request publication, preview and publish ==== 249 + 250 +Until you request your model entry to be published in the EBRAINS Knowledge Graph, 251 +only members of the collab will be able to view the model entry, in the Model Catalog app 252 +or using the Model Validation Python client. 253 + 254 +After publication, the model will appear in the [[EBRAINS public search results>>https://search.kg.ebrains.eu/?category=Model||rel="noopener noreferrer" target="_blank"]], and will receive a DOI. 255 + 256 +To request publication, [[contact EBRAINS support>>https://ebrains.eu/support||rel="noopener noreferrer" target="_blank"]], providing the collab name and the model name or ID. 257 + 258 + 259 +Curators will then perform a number of checks: 260 + 261 +1. Does the model description provide sufficient context to understand the purpose and use of the model? 262 +1. Does the code repository contain a licence file, explaining the conditions for reusing the code? 263 +1. Does the model have a clearly defined version identifier (e.g. v1.0)? For models in a Git repository, the version identifier should match the name of a tag or release. 264 + 265 +The curators will also take a snapshot of your model code. 266 + 267 +* For models in public Git repositories, we archive a copy of the repository in [[Software Heritage>>https://www.softwareheritage.org/||rel="noopener noreferrer" target="_blank"]]. 268 +* For models in a collab Bucket or Drive, we make a read-only copy of the code in a public container in the EBRAINS repository. 269 + 270 +Once this is done, you will be invited to review a preview of how the model entry will appear in the KG Search, 271 +and will have the opportunity to request modifications prior to approval and publication. 272 + 141 141 ---- 142 142 143 -=== Step by Step - Models===275 +=== Step by Step - Software === 144 144 145 -[place-holder-process-diagram] 146 146 147 -==== **1. model step 1 ** ==== 278 +(% class="box floatinginfobox" id="software-curation-infographic" %) 279 +((( 280 +(% style="text-align:center" %) 281 +//Software curation at a glance// 282 +// // 283 +[[[[image:Thumb2.png||alt="EBRAINS-Share-Software.pdf" height="287" width="197"]]>>attach:EBRAINS-Share-Software-4.pdf]] 284 +))) 148 148 149 - Text286 +(% style="margin-left:15px" %)[[[[image:Screenshot 2023-06-06 1122082.png||alt="swc-flow.png" height="136" width="637"]]>>https://www.ebrains.eu/tools/ebrains-curation-request-form||rel="noopener noreferrer" target="_blank"]] 150 150 288 +1. Fill in the [[request form>>https://www.ebrains.eu/tools/ebrains-curation-request-form]]. You'll be contacted by a curator with further instructions. In these instructions, you will find the links to your software and software version entries in the Knowledge Graph. 289 +1. Enter the metadata of your software in your private space of the [[Knowledge Graph Editor>>url:https://editor.kg.ebrains.eu/]] by using the links provided by the curator. Please provide the metadata for your software as complete as possible. This makes it easier for users to find and use your software. If you have questions feel free to contact the curation support. After you have finished editing your entries, please let the curators know by replying to your ticket. We curate your metadata and get back to you, if necessary. 290 +1. After a quality check, we integrate and publish the information to the Knowledge Graph. Your software is then searchable and usable for the neuroscience community. 151 151 152 - ====**2.model step 2**====292 +If you want to add a new version to an already curated software, please request this via the [[curation request form>>https://nettskjema.no/a/277393]]. 153 153 154 - Text294 +For more information, visit our [[Guide to Software Curation in the EBRAINS Knowledge Graph>>url:https://wiki.ebrains.eu/bin/view/Collabs/swc-guide]] or see our infographic on the right. 155 155 156 156 157 157 ---- 158 158 159 -=== S tepbyStep- Code===299 +=== Sharing human subject data === 160 160 161 -[place-holder-process-diagram] 301 +(% class="box floatinginfobox" %) 302 +((( 303 +**Human subject data that can be shared on EBRAINS:** 304 +// // 305 +// - Post-mortem data// 306 +// - Aggregated data// 307 +// - Strongly pseudonymized or de-identified subject data// 308 +// with a legal basis for sharing (e.g. Informed Consent)// 309 +// // 162 162 163 -==== **1. code step 1 ** ==== 311 +(% class="small" %) 312 +//If you have human data that does not qualify as any of the above,// 313 +//please [[get in touch>>https://www.ebrains.eu/contact/]] and we will clarify the available options.// 314 +))) 164 164 165 -Text 166 166 317 +Human subject data shared on EBRAINS must comply with [[GDPR >>https://gdpr-info.eu/]]and [[EU directives>>https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32010L0063]]. The information we need to assess this is collected via our [[Ethics and Regulatory Compliance Survey>>https://nettskjema.no/a/224765]]. 167 167 168 - ====**2.code step2**====319 +Post-mortem and aggregated human data can be shared openly, given direct identifiers in the metadata are removed. Strongly pseudonymized and de-identified data can be shared via the Human Data Gateway (HDG). 169 169 170 -Te xt321 +The Human Data Gateway (HDG) was introduced in February 2021 as a response to the needs of multiple data providers who are bringing human subject data to EBRAINS. HDG covers the sharing of strongly pseudonymized or de-identified data, a limited range human subject data without direct identifiers and with very few indirect identifiers. 171 171 323 +The HDG adds an an authentication layer on top of the data. This means that **data users **must request access to the data (via their EBRAINS account) and will receive access provided they actively accept the [[EBRAINS Access Policy>>https://ebrains.eu/terms#access-policy]], the [[EBRAINS General Terms of Use>>https://ebrains.eu/terms#general-terms-of-use]], and the [[EBRAINS Data Use Agreement>>https://ebrains.eu/terms#data-use-agreement]]. The account holder also have to accept that information about their request and access to specific data under HDG is being tracked and stored. **Data owners** must be aware that sharing under the HDG affects the legal responsibilities for the data. They must agree to joint control of the data (see the [[Data Provision Protocol v1>>url:https://strapi-prod.sos-ch-dk-2.exo.io/EBRAINS_Data_Provision_Protocol_dfe0dcb104.pdf]], section 1.4 - 1.5) and the Data Protection Officers of the responsible institutions must have accepted that the data can be shared under HDG. 324 + 325 +The HDG is an extension of the existing services and does not replace the future EBRAINS Service for sensitive data (planned for 2024) which is outside the domain of the current EBRAINS Data and Knowledge services. 326 + 172 172 ---- 173 173 174 -== ** Resources for researcherslookingto sharedata** ==329 +== **The openMINDS metadata framework** == 175 175 176 -Below you can find some resources that can come in handy if you are looking to share data via EBRAINS, or in general. 331 +(% class="box floatinginfobox" %) 332 +((( 333 +[[[[image:https://github.com/HumanBrainProject/openMINDS/raw/main/img/light_openMINDS-logo.png||alt="openMINDS logo" height="87" width="164"]]>>https://github.com/HumanBrainProject/openMINDS]] 334 +))) 177 177 336 +openMINDS (open Metadata Initiative for Neuroscience Data Structures) is a community-driven, open-source metadata framework for graph database systems, such as the EBRAINS Knowledge Graph. It is composed of linked metadata models, libraries of serviceable metadata instances, and supportive tooling ([[openMINDS Python>>url:https://pypi.org/project/openMINDS/]], openMINDS Matlab). For exploring the openMINDS schemas, go to the [[HTML documentation>>url:https://humanbrainproject.github.io/openMINDS/]]. For a full overview of the framework, go to [[the openMINDS collab>>url:https://wiki.ebrains.eu/bin/view/Collabs/openminds/]] or the [[GitHub repository>>https://github.com/HumanBrainProject/openMINDS]]. 337 + 338 +For feedback, requests, or contributions, please get in touch with the openMINDS development team via 339 + 340 +* the support-email: [[openminds@ebrains.eu>>path:mailto:openminds@ebrains.eu]] 341 +* the [[GitHub issue tracker>>url:https://github.com/HumanBrainProject/openMINDS/issues]] 342 +* the INCF NeuroStars [[openMINDS Community Forum>>url:https://neurostars.org/t/openminds-community-forum-virtual/20156]] 343 + 178 178 ---- 179 179 180 -== =**Usefulinformationaboutsharingof experimentaldataon EBRAINS** ===346 +== **The curation team: meet the curators** == 181 181 348 +The EBRAINS curators help researchers publish their research using the EBRAINS Research Infrastructure. A curator’s job is similar to the job of an editor of a scientific journal, checking the data is organized, understandable, accessible and sufficiently described. 182 182 183 -|(% style="width:593px" %)((( 184 -[[[[image:image-20230324171114-2.png]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]] 185 -)))|(% style="width:1240px" %)((( 186 -[[[[image:image-20230324171109-1.png]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]] 350 +The curators in EBRAINS are located in Oslo, Jülich, Trier and Paris. 351 + 352 + 353 +**Located in Norway:** 354 + 355 +|(% style="width:303px" %)((( 356 +[[image:My project2.jpg||height="209" width="167"]] 357 + 358 +**Archana Golla** 359 + 360 +(% class="small" %)Curation Scientist 361 +Neuroscience (PhD)(%%) 362 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Behavioral neuroscience and microscopy** 363 +)))|(% style="width:303px" %)((( 364 +[[image:Camilla.jpg||alt="My project.jpg" height="209" width="167"]] 365 + 366 +**Camilla H. Blixhavn** 367 + 368 +(% class="small" %)Curation Scientist, 369 +Phd Student 370 +Neuroscience (M. Sc.)(%%) 371 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and data integration** 372 +)))|(% style="width:303px" %)((( 373 +[[image:My project (1).jpg||height="209" width="167"]] 374 + 375 +**Ingrid Reiten** 376 + 377 +(% class="small" %)Curation Scientist, 378 +Phd Student 379 +Neuroscience (M. Sc.)(%%) 380 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and structural connectivity** 381 +)))|(% style="width:303px" %)((( 382 +[[image:My project1.jpg||height="209" width="167"]] 383 + 384 +**Sophia Pieschnik** 385 + 386 +(% class="small" %)Curation Scientist 387 +Neurocognitive Psychology (M. Sc.)(%%) 388 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroimaging ** 187 187 ))) 188 -|(% style="width:593px" %)//Collection of useful information for researchers looking to share experimental data on EBRAINS.//|(% style="width:1240px" %)//The EBRAINS data descriptor// 189 189 190 ----- 391 +|(% style="width:303px" %)((( 392 +[[image:My project.jpg||height="209" width="167"]] 191 191 192 - ===**Introduction todata organisation**===394 +**Heidi Kleven** 193 193 194 -Have you ever experienced not being able to find a file that you were sure you had somewhere? We have prepared a [[collection of guidelines>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] and [[advice>>https://drive.ebrains.eu/lib/f5cf4964-f095-49bd-8c34-e4ffda05a497/file/DataOrganisation.zip]] on how to organise files and folders to ensure consistency and reproducibility in the future. 396 +(% class="small" %)Curation Scientist, 397 +Phd Student 398 +Neuroscience (M. Sc.)(%%) 399 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Neuroanatomy and brain atlases** 400 +)))| | | 195 195 196 -* Why is data organisation important? 197 -* How to organise my data repository? 198 -* What is a Data Descriptor and why do I need one? 402 + 403 +\\**Located in Germany:** 199 199 405 +|(% style="width:303px" %)((( 406 +[[image:My project (2).jpg||height="209" width="167"]] 407 + 408 +**Jan Gündling** 409 + 410 +(% class="small" %)Curation Scientist, 411 +Phd Student 412 +Sensors and Cognitive Psychology (M. Sc.)(%%) 413 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Human-Computer Interaction** 414 +)))|(% style="width:303px" %)((( 415 +[[image:Lyuba.jpg||height="209" width="167"]] 416 + 417 +**Lyuba Zehl** 418 + 419 +(% class="small" %)Knowledge Systems Engineer 420 +Dr. rer. nat. (Systems Neuroscience)(%%) 421 +(% class="small" style="--darkreader-inline-color:#d3cbbf; color:#4a5568" %)**Standard development, data & knowledge management, interdisciplinary communication, data analysis** 422 +)))|(% style="width:303px" %) |(% style="width:303px" %) 423 + 200 200 ---- 201 201 202 -== =**Integrate your datain theEBRAINSatlas services** ===426 +== **Add practical value to your shared data, model or software** == 203 203 204 -EBRAINS supports viewers for a variety of data, and is continuously looking to improve the services for visualising data. For 2D histology image data that is registered to an EBRAINS supported brain atlas, the data and the overlying atlas plates can be uploaded to the LocaliZoom viewer. See for example the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. 205 205 206 - To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu.429 +---- 207 207 431 +=== **Showcase shared data, models or software in other services** === 432 + 433 +Below is a list of additional services that data, models or software shared via EBRAINS can benefit from. EBRAINS is continuously looking to increase the number of interoperable services. 434 + 435 + 436 +|(% colspan="2" %)**Viewer for 2D images** 437 +|[[image:MIO_screenshot.PNG]]|Integrate image data with //the Mio viewer//: EBRAINS Multi-Image OpenSeadragon viewer provides an intuitive way of navigating high-resolution 2D image series. It has browser-based classic pan and zoom capabilities. A collection can be displayed as a filmstrip (Filmstrip Mode) or as a table (Collection Mode) with adjustable number of row and columns. See [[Mio viewer links available for this dataset>>https://search.kg.ebrains.eu/?category=Dataset&q=nr2f1#9677359c-73fa-4425-b8fa-3de794e9017a]] as an example. MioViewer user manual is found [[here>>https://multi-image-osd.readthedocs.io/en/latest/index.html]]. 438 +|(% colspan="2" %)**Viewer for sequential atlas-registered 2D images with annotation options** 439 +|[[image:LZ_screenshot.PNG]]|Integrate atlas-registered 2D image data with //the LocaliZoom viewer//: The EBRAINS LocaliZoom serial section viewer displays series of registered 2D section images with atlas overlay, allowing the users to zoom into high-resolution images and have information about the brain regions. See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. LocaliZoom user manual is found [[here>>https://localizoom.readthedocs.io/en/latest/index.html]]. 440 +|(% colspan="2" %)**Interactive 3D atlas viewer with options for data visualization** 441 +|[[image:3Datlas_screenshot.PNG]]|Upload your data to the //Siibra-explorer//: The siibra-explorer is used for visualizing volumetric brain data in all the brain atlases provided by EBRAINS (Human, Monkey, Rat and Mouse). The siibra-explorer viewer uses siibra-api to enable navigation of brain region hierarchies, maps in different coordinate spaces, and linked regional data features. Furthermore, it is connected with the siibra toolsuite providing several analytical workflows. To learn more about how to register your data to atlases, read about the [[Atlas services on ebrains.eu>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]]. 442 +|(% colspan="2" %)**Use your research product in an interactive publication** 443 +|[[image:LivePaper_screenshot.PNG]]|Add your data, models or software to a// Live paper. //Read more about [[Live papers on ebrains.eu>>https://www.ebrains.eu/data/live-papers/live-papers]]. 444 + 208 208 ---- 209 209 210 -=== ** Commonconcerns-and answers ** ===447 +==== **Add a tutorial or learning resource ** ==== 211 211 212 -( ((213 -= =======449 +(% class="wikigeneratedid" id="H-LearningresourceA05Binformation5D" %) 450 +(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow// 214 214 215 -> 216 216 217 -((( 218 ->The curation process is time consuming and difficult 219 -))) 220 -))) 453 +==== **Create a workflow** ==== 221 221 222 -(% class="wikigeneratedid" id="H HowcanIshareA0models3F" %)223 - Publishingyourdata naturally takes some timeandffort but we willsupportyou as much as possible. If communicationison aregularbasis, we are able to finish basic curation- from theinitialcontact to dataset release - within twoeeks.455 +(% class="wikigeneratedid" id="H-Workflows5Binformation5D" %) 456 +(% style="--darkreader-inline-color:#ffffff; color:#000000" %)//More information will follow// 224 224 225 - >Sharing my data is not beneficial for me-only for others458 +---- 226 226 460 +=== **The benefits of sharing data ** === 227 227 228 - Whenyoupublish your data via EBRAINS,we provide comprehensive data management supportand safe longterm storage - all free of charge. Additionally,your datacan becited, just like ascientificjournal article. Sharing yourdata mayevenlead tonewfundingopportunities. Many funders specifically supportprojectsthat are part of the “Open Science” initiative.462 +By sharing your data via EBRAINS, you gain access to the following benefits: 229 229 230 - >My datais too insignificant to share464 +[[image:image-20230324170841-3.png]] 231 231 232 232 233 -There is no such thing as insignificant data. Data that is considered insignificant for a given topic, may have great significance for another. By making “insignificant” data publicly available, other researchers may find something interesting that was off-topic for your own purposes. 234 234 235 - >My dataybemisused ifIshare it with the world468 +We support you to better follow the [[FAIR^^ ^^guiding principles>>https://www.nature.com/articles/sdata201618]] for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}. Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product. 236 236 470 +---- 237 237 238 - Yourdata will be covered by a Creative Commonslicense ofyourchoice. Thereare a variety of licensesavailable, enabling youto prevent use for specific purposes,e.g.commercial use.472 +=== **Frequently asked questions ** === 239 239 240 ->I don't think I'm allowed to share my data 474 +((( 475 +==== ==== 241 241 477 +((( 478 +>Is the curation process time consuming and difficult? 479 +))) 480 +))) 242 242 243 - Many institutionsare still very carefulabout whatcan be shared and how, but the situation isconstantlyevolving. Asa researcherproviding data,youwillbe askedto fill out anethics compliancesurveywhichsurveyto ensurethat data publishedthroughtheEBRAINS platformhasbeen collectedaccordingtoEU regulations.Weareworkingonsolutions forsharing anonymised humandata that complieswithGDPR standardstoprotect the identity of researchsubjects.482 +No, if communication is on a regular basis, we are able to finish curation within two weeks. Publishing your data naturally takes some effort but we will support you as much as possible. 244 244 245 ->I can'tsharemy data beforemy paperis published484 +>Is sharing my data also beneficial for me or only for others? 246 246 486 +When you publish your data via EBRAINS, we provide comprehensive data management support and safe long term storage - all free of charge. Additionally, your data can be cited, just like a scientific journal article. Sharing your data may even lead to new funding opportunities. Many funders specifically support projects that are part of the “Open Science” initiative. 247 247 248 - If you do not wantto shareyourdata beforepublishingthe results in an article, you can publish yourdataset with anembargostatus. This will make it possible to findinformationabout the data withoutmaking the data itself available, and give you a citeable DOI.488 +>Can my data be too insignificant to share? 249 249 250 - >IfIsharemydatabeforeIpublishthe associatedpaper,Iwill lose mycompetitivedge490 +No, there is no such thing as insignificant data. Data that is considered insignificant for a given topic, may have great significance for another. By making “insignificant” data publicly available, other researchers may find something interesting that was off-topic for your own purposes. 251 251 492 +>Can my data be easily misused if I share it? 252 252 253 - Publishing yourdata does not mean that others can use it however theywant. Useof your data willrequirecitation, and bychoosinganappropriateCreative Commons licence youdecidewhat othersare allowedto do withit. Ifyou still feelworried,you canpublishyourdataundermbargo, and inthisway delaythe date ofdatarelease,butstill maketpossiblefor othersto find theinformationaboutthedata.494 +No, your data will be covered by a Creative Commons license of your choice. There are a variety of licenses available, enabling you to prevent use for specific purposes, e.g. commercial use. 254 254 496 +>Can I share my data before my paper is published? 255 255 498 +Yes, if you do not want to share your data before publishing the results in an article, you can publish your dataset with an embargo status. This will make it possible to find information about the data without making the data itself available, and give you a citeable DOI. 499 + 500 +>Can I lose my competitive edge if I share my data before I publish the associated paper? 501 + 502 +No, publishing your data does not mean that others can use it however they want. Use of your data will require citation, and by choosing an appropriate Creative Commons licence you decide what others are allowed to do with it. If you still feel worried, you can publish your data under embargo, and in this way delay the date of data release, but still make it possible for others to find the information about the data. 503 + 504 + 256 256 ---- 257 257 258 258 == Contact == ... ... @@ -260,4 +260,6 @@ 260 260 [[curation-support@ebrains.eu>>mailto:curation-support@ebrains.eu]] 261 261 262 262 512 +== References == 513 + 263 263 {{putFootnotes/}}
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