Changes for page data-curation-copy
Last modified by eapapp on 2023/07/04 16:46
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... ... @@ -19,34 +19,23 @@ 19 19 20 20 ---- 21 21 22 -== ** Whatiscuration?** ==22 +== **The EBRAINS curation process** == 23 23 24 - >TheEBRAINSdata curationprocess involvesorganisingand annotating neuroscientificdata tomake the datadiscoverable andreusable.24 +In EBRAINS, multimodal and heterogenous neuroscience data, models and software are categorised and described in a standardised manner so that they can be effectively searched, compared, and analysed. This effort is referred to as curation. 25 25 26 - Neuroscience data are multimodal, heterogenous, and organisedindifferent ways. All these diversedata need tobe categorisedand described in astandardisedmanner sohatthey can be effectively searched, compared, and analysed byusing theintegratedtoolsand workflowsontheEBRAINS platform.Thiseffort is referredtoascuration.26 +>The EBRAINS curation process involves organising and annotating neuroscientific data to make the data discoverable and reusable. 27 27 28 +Behind this process is the EBRAINS Curation team. Our mandate is to support you in sharing your data in line with the [[**FAIR principles**>>https://www.go-fair.org/fair-principles/]], whether you choose to describe only the key aspects of your data, or can invest in adding more detailed metadata. 28 28 29 -Curated data, models and code are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. 30 +(% class="box floatinginfobox" %) 31 +((( 32 +We strongly recommend to start preparing for data sharing as early as possible. With a structured data repository and adequate notes on how the data was acquired, you greatly minimize the effort required to publish your data. The time it takes to share data on EBRAINS heavily depends on on the engagement from the researcher and how well the data and metadata is prepared before-hand. **[[Contact us to prepare for sharing>>mailto:curation-support@ebrains.eu]]. ** 33 +))) 30 30 35 +=== === 31 31 32 - (% style="color:#e74c3c"%)Theircomparabilityand37 +=== === 33 33 34 -(% style="color:#e74c3c" %)Sharing your data, models or code (research products) via EBRAINS makes it discoverable amongst other research products available in (%%)[[(% style="color:#e74c3c" %)the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]](%%). This is made possible by the highly flexible metadata framework describing neuroscience data in detail, [[(% style="color:#e74c3c" %)openMINDS>>https://github.com/HumanBrainProject/openMINDS]](%%). EBRAINS is gradually implementing interconnected tools and analysis workflows developed in the Human Brain Project (HBP) to further enhance the output from adding your dataset to the database. 35 - 36 ----- 37 - 38 -== **The data curation process** == 39 - 40 -Our mandate is to support you in sharing your data in line with the [[**FAIR principles**>>https://www.go-fair.org/fair-principles/]], whether you choose to describe only the key aspects of your data, or can invest in adding more detailed metadata. Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product. 41 - 42 - 43 -Data, models and code are integrated into the [[EBRAINS Knowledge Graph>>url:https://kg.ebrains.eu/]] by using interoperable metadata schemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]]. This makes the data and metadata discoverable in the [[KG Search>>url:https://search.kg.ebrains.eu/]] and programmatically via the [[KG API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. 44 - 45 -Data and models are linked to and discoverable via the species-specific [[EBRAINS Interactive Atlas Viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]]. 46 - 47 - 48 -The time it takes to share data on EBRAINS heavily depends on on the engagement from the researcher and how well the data and metadata is prepared before-hand. We strongly recommend to start preparing for data sharing as early as possible. With a structured data repository and adequate notes on how the data was acquired, you greatly minimize the effort required to publish your data. **Want to learn more about how to Prepare to Share? **Contact us! 49 - 50 50 === Step by step - Experimental data === 51 51 52 52 ... ... @@ -153,6 +153,14 @@ 153 153 154 154 ---- 155 155 145 +=== Output / result, when you've completed the curation process, what do you get === 146 + 147 +Curated data, models and software are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and programmatically via the [[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadata schemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]]. 148 + 149 +Data and models are linked to and discoverable via the species-specific [[EBRAINS Interactive Atlas Viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]]. 150 + 151 +---- 152 + 156 156 == **Resources for researchers looking to share data** == 157 157 158 158 Below you can find some resources that can come in handy if you are looking to share data via EBRAINS, or in general. ... ... @@ -161,14 +161,20 @@ 161 161 162 162 === **Why should I share data?** === 163 163 161 +(% style="color:#e74c3c" %)[EDIT required] 162 + 163 +(% style="color:#e74c3c" %)Sharing your data, models or code (research products) via EBRAINS makes it discoverable amongst other research products available in the [[EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This is made possible by the highly flexible metadata framework describing neuroscience data in detail. EBRAINS is gradually implementing interconnected tools and analysis workflows developed in the Human Brain Project (HBP) to further enhance the output from adding your dataset to the database. 164 + 165 + 164 164 By sharing your data via EBRAINS, you gain access to the following benefits: 165 165 166 166 [[image:image-20230324170841-3.png]] 167 167 168 168 169 -We support you to better follow the FAIR^^ ^^guiding principles for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}. 170 170 172 +We support you to better follow the FAIR^^ ^^guiding principles for data management and stewardship{{footnote}}Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016). https://doi.org/10.1038/sdata.2016.18 {{/footnote}}. Publishing data, models or code via EBRAINS will provide you with a citeable [[DataCite DOI>>https://www.doi.org/the-identifier/resources/handbook/]] for your research product. 171 171 174 + 172 172 ---- 173 173 174 174 (% style="font-family:inherit" %) (% style="color:#1a202c; font-family:inherit; font-size:26px" %)**What can I share on EBRAINS? **