Changes for page data-curation-copy

Last modified by eapapp on 2023/07/04 16:46
From version 36.1
edited by ingrreit
on 2023/03/26 07:26
Change comment: There is no comment for this version
To version 52.1
edited by spieschnik
on 2023/04/25 15:33
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1 -== Publishing data, models and software via EBRAINS ==
1 +== Publishing neuroscience data, models and software via EBRAINS ==
2 2  
3 3  The aim of this collab is to provide you with all the information you need to publish your experimental data, simulations, computational models, and software via EBRAINS. Have you already published your data somewhere else? You can increase the exposure and impact of your shared dataset by also listing it on EBRAINS.
4 4  
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25 25  
26 26  >The EBRAINS curation process involves organising and annotating neuroscientific data to make the data discoverable and reusable.
27 27  
28 -
29 29  Behind this process is the EBRAINS Curation team. Our mandate is to support you in sharing your data in line with the [[**FAIR principles**>>https://www.go-fair.org/fair-principles/]], whether you choose to describe only the key aspects of your data, or can invest in adding more detailed metadata.
30 30  
30 +=== About the curation team ===
31 31  
32 +[[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]]
33 +
34 +**Sophia Pieschnik**
35 +Biology (B.Sc.)
36 +Neurocognitive Psychology (M.Sc.)
37 +
38 +
39 +(% class="box successmessage" %)
40 +(((
41 +**Particular needs? Contact us! **The process of sharing data can be modified to fit the needs of researchers and large-scale projects. Contact us if you have such requests and we'll be happy to work with you to find a solution that suits us both.
42 +)))
43 +
32 32  (% class="box floatinginfobox" %)
33 33  (((
34 34  **We strongly recommend to start preparing for data sharing as early as possible.** With a structured data repository and adequate notes on how the data was acquired, you greatly minimize the effort required to publish your data. The time it takes to share data on EBRAINS heavily depends on on the engagement from the researcher and how well the data and metadata is prepared before-hand. **[[Contact us for personalised guidance on how to prepare for sharing>>mailto:curation-support@ebrains.eu]]. **
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38 38  
39 39  
40 40  
53 +We promote sharing of experimental data, models, software, web services, metadata models,
41 41  
42 42  
43 43  ----
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47 47  
48 48  [[image:image-20230326054341-1.png]]
49 49  
50 -(% class="wikigeneratedid" %)
51 51  ==== ====
52 52  
53 53  ==== **1. Provide some general information about your dataset** ====
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150 150  
151 151  ----
152 152  
153 -=== Output / result, when you've completed the curation process, what do you get ===
165 +=== When you've completed the curation process ===
154 154  
155 155  Curated data, models and software are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and programmatically via the [[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadata schemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]].
156 156  
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158 158  
159 159  ----
160 160  
161 -== **Resources for researchers looking to share data** ==
173 +== **Information and resources for researchers looking to share data** ==
162 162  
163 163  Below you can find some resources that can come in handy if you are looking to share data via EBRAINS, or in general.
164 164  
165 165  ----
166 166  
167 -=== **Why should I share data?** ===
179 +=== **The benefits of sharing data ** ===
168 168  
169 -(% style="color:#e74c3c" %)[EDIT required]
181 +(% style="color:#000000" %)Sharing your data, models or code (research products) via EBRAINS makes it discoverable amongst other research products available in the (%%)[[(% style="color:#000000" %)EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]](%%). This is made possible by the highly flexible metadata framework describing neuroscience data in detail.
170 170  
171 -(% style="color:#e74c3c" %)Sharing your data, models or code (research products) via EBRAINS makes it discoverable amongst other research products available in the [[EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This is made possible by the highly flexible metadata framework describing neuroscience data in detail. EBRAINS is gradually implementing interconnected tools and analysis workflows developed in the Human Brain Project (HBP) to further enhance the output from adding your dataset to the database.
183 +(% style="color:#000000" %)EBRAINS is gradually implementing interconnected tools and analysis workflows developed in the Human Brain Project (HBP) to further enhance the output from adding your dataset to the database.
172 172  
173 173  
174 174  By sharing your data via EBRAINS, you gain access to the following benefits:
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190 190  
191 191  ----
192 192  
193 -=== **Useful information about sharing of experimental data on EBRAINS ** ===
205 +=== **At a glance: "Sharing experimental data on EBRAINS" ** ===
194 194  
195 195  
196 -|(% style="width:593px" %)(((
197 -[[[[image:image-20230324171114-2.png]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
198 -)))|(% style="width:1240px" %)(((
199 -[[[[image:image-20230324171109-1.png]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
200 -)))
201 -|(% style="width:593px" %)//Collection of useful information for researchers looking to share experimental data on EBRAINS.//|(% style="width:1240px" %)//The EBRAINS data descriptor//
208 +|(% style="width:439px" %)(((
209 +[[[[image:image-20230324171114-2.png||height="354" width="250"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
210 +)))|(% style="width:461px" %)(((
211 +[[[[image:image-20230324171109-1.png||height="352" width="250"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
212 +)))|(% style="width:416px" %)[[[[image:image-20230330120354-1.png||height="352" width="250"]]>>https://drive.ebrains.eu/f/707147a883b94fae8e69/]]
213 +|(% style="width:439px" %)//Collection of useful information for researchers looking to share experimental data on EBRAINS.//|(% style="width:461px" %)//The EBRAINS data descriptor: a general overview //|(% style="width:416px" %)//Introduction to data organization: A [[collection of guidelines>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] on how to organise files and folders to ensure consistency and reproducibility in the future. //
202 202  
203 203  ----
204 204  
205 -=== **Introduction to data organisation ** ===
206 -
207 -Have you ever experienced not being able to find a file that you were sure you had somewhere? We have prepared a [[collection of guidelines>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] and [[advice>>https://drive.ebrains.eu/lib/f5cf4964-f095-49bd-8c34-e4ffda05a497/file/DataOrganisation.zip]] on how to organise files and folders to ensure consistency and reproducibility in the future.
208 -
209 -* Why is data organisation important?
210 -* How to organise my data repository?
211 -* What is a Data Descriptor and why do I need one?
212 -
213 -----
214 -
215 215  === **Integrate your data in the EBRAINS atlas services** ===
216 216  
217 217  EBRAINS supports viewers for a variety of data, and is continuously looking to improve the services for visualising data. For 2D histology image data that is registered to an EBRAINS supported brain atlas, the data and the overlying atlas plates can be uploaded to the LocaliZoom viewer. See for example the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example.
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225 225  (((
226 226  ==== ====
227 227  
228 ->
229 -
230 230  (((
231 231  >The curation process is time consuming and difficult
232 232  )))
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