Changes for page data-curation-copy

Last modified by eapapp on 2023/07/04 16:46
From version 47.2
edited by ingrreit
on 2023/04/25 15:04
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To version 39.1
edited by ingrreit
on 2023/03/26 07:36
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1 -== Publishing neuroscience data, models and software via EBRAINS ==
1 +== Publishing data, models and software via EBRAINS ==
2 2  
3 3  The aim of this collab is to provide you with all the information you need to publish your experimental data, simulations, computational models, and software via EBRAINS. Have you already published your data somewhere else? You can increase the exposure and impact of your shared dataset by also listing it on EBRAINS.
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25 25  
26 26  >The EBRAINS curation process involves organising and annotating neuroscientific data to make the data discoverable and reusable.
27 27  
28 +
28 28  Behind this process is the EBRAINS Curation team. Our mandate is to support you in sharing your data in line with the [[**FAIR principles**>>https://www.go-fair.org/fair-principles/]], whether you choose to describe only the key aspects of your data, or can invest in adding more detailed metadata.
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30 -(% style="text-align: center;" %)
31 -(% style="color:#e74c3c" %)[PLACEHOLDER: ABOUT THE CURATION TEAM]
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33 -
34 34  (% class="box floatinginfobox" %)
35 35  (((
36 36  **We strongly recommend to start preparing for data sharing as early as possible.** With a structured data repository and adequate notes on how the data was acquired, you greatly minimize the effort required to publish your data. The time it takes to share data on EBRAINS heavily depends on on the engagement from the researcher and how well the data and metadata is prepared before-hand. **[[Contact us for personalised guidance on how to prepare for sharing>>mailto:curation-support@ebrains.eu]]. **
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167 167  
168 168  === **The benefits of sharing data ** ===
169 169  
170 -(% style="color:#000000" %)Sharing your data, models or code (research products) via EBRAINS makes it discoverable amongst other research products available in the (%%)[[(% style="color:#000000" %)EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]](%%). This is made possible by the highly flexible metadata framework describing neuroscience data in detail.
168 +(% style="color:#e74c3c" %)[EDIT required]
171 171  
172 -(% style="color:#000000" %)EBRAINS is gradually implementing interconnected tools and analysis workflows developed in the Human Brain Project (HBP) to further enhance the output from adding your dataset to the database.
170 +(% style="color:#e74c3c" %)Sharing your data, models or code (research products) via EBRAINS makes it discoverable amongst other research products available in the [[EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This is made possible by the highly flexible metadata framework describing neuroscience data in detail. EBRAINS is gradually implementing interconnected tools and analysis workflows developed in the Human Brain Project (HBP) to further enhance the output from adding your dataset to the database.
173 173  
174 174  
175 175  By sharing your data via EBRAINS, you gain access to the following benefits:
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191 191  
192 192  ----
193 193  
194 -=== **At a glance: "Sharing experimental data on EBRAINS" ** ===
192 +=== **At a glance **–** "Sharing experimental data on EBRAINS" ** ===
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196 196  
197 -|(% style="width:439px" %)(((
198 -[[[[image:image-20230324171114-2.png||height="354" width="250"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
199 -)))|(% style="width:461px" %)(((
200 -[[[[image:image-20230324171109-1.png||height="352" width="250"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
201 -)))|(% style="width:416px" %)[[[[image:image-20230330120354-1.png||height="352" width="250"]]>>https://drive.ebrains.eu/f/707147a883b94fae8e69/]]
202 -|(% style="width:439px" %)//Collection of useful information for researchers looking to share experimental data on EBRAINS.//|(% style="width:461px" %)//The EBRAINS data descriptor: a general overview //|(% style="width:416px" %)//Introduction to data organization: A [[collection of guidelines>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] on how to organise files and folders to ensure consistency and reproducibility in the future. //
195 +|(% style="width:593px" %)(((
196 +[[[[image:image-20230324171114-2.png]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
197 +)))|(% style="width:1240px" %)(((
198 +[[[[image:image-20230324171109-1.png]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
199 +)))
200 +|(% style="width:593px" %)//Collection of useful information for researchers looking to share experimental data on EBRAINS.//|(% style="width:1240px" %)//The EBRAINS data descriptor//
203 203  
204 204  ----
205 205  
204 +=== **Introduction to data organisation ** ===
205 +
206 +Have you ever experienced not being able to find a file that you were sure you had somewhere? We have prepared a [[collection of guidelines>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] and [[advice>>https://drive.ebrains.eu/lib/f5cf4964-f095-49bd-8c34-e4ffda05a497/file/DataOrganisation.zip]] on how to organise files and folders to ensure consistency and reproducibility in the future.
207 +
208 +* Why is data organisation important?
209 +* How to organise my data repository?
210 +* What is a Data Descriptor and why do I need one?
211 +
212 +----
213 +
206 206  === **Integrate your data in the EBRAINS atlas services** ===
207 207  
208 208  EBRAINS supports viewers for a variety of data, and is continuously looking to improve the services for visualising data. For 2D histology image data that is registered to an EBRAINS supported brain atlas, the data and the overlying atlas plates can be uploaded to the LocaliZoom viewer. See for example the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example.
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216 216  (((
217 217  ==== ====
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227 +>
228 +
219 219  (((
220 220  >The curation process is time consuming and difficult
221 221  )))
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1 -XWiki.ingrreit
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