Changes for page data-curation-copy

Last modified by eapapp on 2023/07/04 16:46
From version 50.1
edited by spieschnik
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To version 56.1
edited by ingrreit
on 2023/04/25 17:28
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1 -XWiki.spieschnik
1 +XWiki.ingrreit
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21 21  
22 22  == **The EBRAINS curation process** ==
23 23  
24 +(% class="box successmessage" %)
25 +(((
26 +EBRAINS accepts **experimental data,** of all modalities and from all species, **models**, **software**, **web services **and **metadata models**. You'll find detailed information about each research product below.
27 +)))
28 +
24 24  In EBRAINS, multimodal and heterogenous neuroscience data, models and software are categorised and described in a standardised manner so that they can be effectively searched, compared, and analysed. This effort is referred to as curation. 
25 25  
26 26  >The EBRAINS curation process involves organising and annotating neuroscientific data to make the data discoverable and reusable.
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27 27  
28 28  Behind this process is the EBRAINS Curation team. Our mandate is to support you in sharing your data in line with the [[**FAIR principles**>>https://www.go-fair.org/fair-principles/]], whether you choose to describe only the key aspects of your data, or can invest in adding more detailed metadata.
29 29  
30 -=== About the curation team ===
31 31  
32 -
33 33  (% class="box successmessage" %)
34 34  (((
35 -**Particular needs? Contact us! **The process of sharing data can be modified to fit the needs of researchers and large-scale projects. Contact us if you have such requests and we'll be happy to work with you to find a solution that suits us both.
38 +**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases.
36 36  )))
37 37  
38 38  (% class="box floatinginfobox" %)
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44 44  
45 45  
46 46  
47 -We promote sharing of experimental data, models, software, web services, metadata models,
50 +Curated data, models and software are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and programmatically via the [[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadata schemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]].
48 48  
52 +Data and models are linked to and discoverable via the species-specific [[EBRAINS siibra atlas viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]].
49 49  
54 +
50 50  ----
51 51  
52 52  === Step by step - Experimental data ===
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156 156  
157 157  ----
158 158  
159 -=== When you've completed the curation process ===
164 +=== Webservices and metadata models ===
160 160  
161 -Curated data, models and software are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and programmatically via the [[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadata schemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]].
166 +=== (% style="color:#e74c3c; font-size:16px" %)Contact....(% style="color:#4a5568; font-size:16px" %) (%%) ===
162 162  
163 -Data and models are linked to and discoverable via the species-specific [[EBRAINS Interactive Atlas Viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]].
168 +----
164 164  
170 +=== **The curation team: meet the curators** ===
171 +
172 +[[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]]
173 +
174 +**Sophia Pieschnik**
175 +(% class="small" %)Biology (B.Sc.)
176 +Neurocognitive Psychology (M.Sc.)
177 +
165 165  ----
166 166  
167 167  == **Information and resources for researchers looking to share data** ==
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170 170  
171 171  ----
172 172  
186 +=== **Enrich your dataset, model or software** ===
187 +
188 +(% style="color:#e74c3c" %)- Workflows [information]
189 +
190 +(% style="color:#e74c3c" %)- Learning resource [information]
191 +
192 +----
193 +
173 173  === **The benefits of sharing data ** ===
174 174  
175 175  (% style="color:#000000" %)Sharing your data, models or code (research products) via EBRAINS makes it discoverable amongst other research products available in the (%%)[[(% style="color:#000000" %)EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]](%%). This is made possible by the highly flexible metadata framework describing neuroscience data in detail.
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188 188  
189 189  ----
190 190  
191 -(% style="font-family:inherit" %) (% style="color:#1a202c; font-family:inherit; font-size:26px" %)**What can I share on EBRAINS? **
192 -
193 -(% class="wikigeneratedid" id="H" %)
194 -[[image:image-20230324170829-2.png]]
195 -
196 -
197 -----
198 -
199 199  === **At a glance: "Sharing experimental data on EBRAINS" ** ===
200 200  
201 201  
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208 208  
209 209  ----
210 210  
211 -=== **Integrate your data in the EBRAINS atlas services** ===
224 +=== **Integrate your data on EBRAINS with other services** ===
212 212  
213 -EBRAINS supports viewers for a variety of data, and is continuously looking to improve the services for visualising data. For 2D histology image data that is registered to an EBRAINS supported brain atlas, the data and the overlying atlas plates can be uploaded to the LocaliZoom viewer. See for example the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example.
226 +EBRAINS supports further integration for a variety of data, and is continuously looking to increase the number of interoperable services.
214 214  
215 -To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu.
228 +* Integrate image data with //the Mio viewer//: (% style="color:#e74c3c" %)[description]
229 +* Integrate atlas-registered 2D image data with //the Localizoom viewer//: (% style="color:#e74c3c" %)[description](%%). See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example.
230 +* Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description]
231 +* Integrate your data to //the atlas viewer Siibra//: (% style="color:#e74c3c" %)[description](%%). To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu.
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217 217  ----
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