Changes for page data-curation-copy
Last modified by eapapp on 2023/07/04 16:46
From version 52.1
edited by spieschnik
on 2023/04/25 15:33
on 2023/04/25 15:33
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... ... @@ -21,6 +21,11 @@ 21 21 22 22 == **The EBRAINS curation process** == 23 23 24 +(% class="box successmessage" %) 25 +((( 26 +EBRAINS accepts **experimental data,** of all modalities and from all species, **models**, **software**, **web services **and **metadata models**. You'll find detailed information about each research product below. 27 +))) 28 + 24 24 In EBRAINS, multimodal and heterogenous neuroscience data, models and software are categorised and described in a standardised manner so that they can be effectively searched, compared, and analysed. This effort is referred to as curation. 25 25 26 26 >The EBRAINS curation process involves organising and annotating neuroscientific data to make the data discoverable and reusable. ... ... @@ -27,18 +27,10 @@ 27 27 28 28 Behind this process is the EBRAINS Curation team. Our mandate is to support you in sharing your data in line with the [[**FAIR principles**>>https://www.go-fair.org/fair-principles/]], whether you choose to describe only the key aspects of your data, or can invest in adding more detailed metadata. 29 29 30 -=== About the curation team === 31 31 32 -[[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]] 33 - 34 -**Sophia Pieschnik** 35 -Biology (B.Sc.) 36 -Neurocognitive Psychology (M.Sc.) 37 - 38 - 39 39 (% class="box successmessage" %) 40 40 ((( 41 -**Particular needs? Contact us! **The processof sharingdatacan be modifiedtofit the needsofresearchersandlarge-scaleprojects.Contactus ifyouhave suchrequests and we'llbehappy toworkwithyou tofindalution that suitsusboth.38 +**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases. 42 42 ))) 43 43 44 44 (% class="box floatinginfobox" %) ... ... @@ -50,9 +50,13 @@ 50 50 51 51 52 52 53 -We promotesharingof experimentaldata,models, software,web services, metadatamodels,50 +=== When you've completed the curation process === 54 54 52 +Curated data, models and software are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and programmatically via the [[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadata schemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]]. 55 55 54 +Data and models are linked to and discoverable via the species-specific [[EBRAINS Interactive Atlas Viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]]. 55 + 56 + 56 56 ---- 57 57 58 58 === Step by step - Experimental data === ... ... @@ -162,12 +162,20 @@ 162 162 163 163 ---- 164 164 165 -=== W hen you'vecompletedthe curationprocess===166 +=== Webservices and metadata models === 166 166 167 - Curateddata,modelsand software are made availablein the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]].Thismakesthe data and metadata discoverablein the[[KnowledgeGraphSearch>>url:https://search.kg.ebrains.eu/]] and programmaticallyviathe[[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. Thedata, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadataschemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]].168 +=== (% style="color: rgb(231, 76, 60); font-size: 16px" %)Contact....(% style="color:#4a5568; font-size:16px" %) (%%) === 168 168 169 - Data and models are linked to and discoverable via the species-specific [[EBRAINS Interactive Atlas Viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]].170 +---- 170 170 172 +=== **The curation team: meet the curators** === 173 + 174 +[[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]] 175 + 176 +**Sophia Pieschnik** 177 +(% class="small" %)Biology (B.Sc.) 178 +Neurocognitive Psychology (M.Sc.) 179 + 171 171 ---- 172 172 173 173 == **Information and resources for researchers looking to share data** == ... ... @@ -176,6 +176,14 @@ 176 176 177 177 ---- 178 178 188 +=== **Enrich your dataset, model or software** === 189 + 190 +(% style="color:#e74c3c" %)- Workflows [information] 191 + 192 +(% style="color:#e74c3c" %)- Learning resource [information] 193 + 194 +---- 195 + 179 179 === **The benefits of sharing data ** === 180 180 181 181 (% style="color:#000000" %)Sharing your data, models or code (research products) via EBRAINS makes it discoverable amongst other research products available in the (%%)[[(% style="color:#000000" %)EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]](%%). This is made possible by the highly flexible metadata framework describing neuroscience data in detail. ... ... @@ -194,14 +194,6 @@ 194 194 195 195 ---- 196 196 197 -(% style="font-family:inherit" %) (% style="color:#1a202c; font-family:inherit; font-size:26px" %)**What can I share on EBRAINS? ** 198 - 199 -(% class="wikigeneratedid" id="H" %) 200 -[[image:image-20230324170829-2.png]] 201 - 202 - 203 ----- 204 - 205 205 === **At a glance: "Sharing experimental data on EBRAINS" ** === 206 206 207 207 ... ... @@ -214,12 +214,16 @@ 214 214 215 215 ---- 216 216 217 -=== **Integrate your data intheEBRAINSatlasservices** ===226 +=== **Integrate your data on EBRAINS with other services** === 218 218 219 -EBRAINS supports viewersfor a variety of data, and is continuously looking to improve the services forvisualising data. For 2D histology imagedata that is registeredto anEBRAINS supportedbrainatlas,the data andtheverlyingatlas plates canbe uploadedto theLocaliZoom viewer. See for example the [[LocaliZoom links availablefor thisdataset>>https://doi.org/10.25493/T686-7BX]]as an example.228 +EBRAINS supports further integration for a variety of data, and is continuously looking to increase the number of interoperable services. 220 220 221 -To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu. 230 +* Integrate image data with //the Mio viewer//: (% style="color:#e74c3c" %)[description] 231 +* Integrate atlas-registered 2D image data with //the Localizoom viewer//: (% style="color:#e74c3c" %)[description](%%). See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. 232 +* Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description] 233 +* Integrate your data to //the atlas viewer Siibra//: (% style="color:#e74c3c" %)[description](%%). To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu. 222 222 235 + 223 223 ---- 224 224 225 225 === **Common concerns - and answers ** ===