Changes for page data-curation-copy

Last modified by eapapp on 2023/07/04 16:46
From version 53.1
edited by spieschnik
on 2023/04/25 15:36
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To version 44.1
edited by ingrreit
on 2023/04/03 12:00
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1 -XWiki.spieschnik
1 +XWiki.ingrreit
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1 -== Publishing neuroscience data, models and software via EBRAINS ==
1 +== Publishing data, models and software via EBRAINS ==
2 2  
3 3  The aim of this collab is to provide you with all the information you need to publish your experimental data, simulations, computational models, and software via EBRAINS. Have you already published your data somewhere else? You can increase the exposure and impact of your shared dataset by also listing it on EBRAINS.
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25 25  
26 26  >The EBRAINS curation process involves organising and annotating neuroscientific data to make the data discoverable and reusable.
27 27  
28 +
28 28  Behind this process is the EBRAINS Curation team. Our mandate is to support you in sharing your data in line with the [[**FAIR principles**>>https://www.go-fair.org/fair-principles/]], whether you choose to describe only the key aspects of your data, or can invest in adding more detailed metadata.
29 29  
30 -=== About the curation team ===
31 31  
32 -[[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]]
33 -
34 -**Sophia Pieschnik**
35 -(% class="small" %)//Biology //
36 -Biology (B.Sc.)
37 -Neurocognitive Psychology (M.Sc.)
38 -
39 -
40 -(% class="box successmessage" %)
41 -(((
42 -**Particular needs? Contact us! **The process of sharing data can be modified to fit the needs of researchers and large-scale projects. Contact us if you have such requests and we'll be happy to work with you to find a solution that suits us both.
43 -)))
44 -
45 45  (% class="box floatinginfobox" %)
46 46  (((
47 47  **We strongly recommend to start preparing for data sharing as early as possible.** With a structured data repository and adequate notes on how the data was acquired, you greatly minimize the effort required to publish your data. The time it takes to share data on EBRAINS heavily depends on on the engagement from the researcher and how well the data and metadata is prepared before-hand. **[[Contact us for personalised guidance on how to prepare for sharing>>mailto:curation-support@ebrains.eu]]. **
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51 51  
52 52  
53 53  
54 -We promote sharing of experimental data, models, software, web services, metadata models,
55 55  
56 56  
57 57  ----
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163 163  
164 164  ----
165 165  
166 -=== When you've completed the curation process ===
152 +=== Output / result, when you've completed the curation process, what do you get ===
167 167  
168 168  Curated data, models and software are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and programmatically via the [[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadata schemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]].
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206 206  === **At a glance: "Sharing experimental data on EBRAINS" ** ===
207 207  
208 208  
209 -|(% style="width:439px" %)(((
210 -[[[[image:image-20230324171114-2.png||height="354" width="250"]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
211 -)))|(% style="width:461px" %)(((
212 -[[[[image:image-20230324171109-1.png||height="352" width="250"]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
213 -)))|(% style="width:416px" %)[[[[image:image-20230330120354-1.png||height="352" width="250"]]>>https://drive.ebrains.eu/f/707147a883b94fae8e69/]]
214 -|(% style="width:439px" %)//Collection of useful information for researchers looking to share experimental data on EBRAINS.//|(% style="width:461px" %)//The EBRAINS data descriptor: a general overview //|(% style="width:416px" %)//Introduction to data organization: A [[collection of guidelines>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] on how to organise files and folders to ensure consistency and reproducibility in the future. //
195 +|(% style="width:593px" %)(((
196 +[[[[image:image-20230324171114-2.png]]>>https://drive.ebrains.eu/f/dfd374b9b43a458192e9/]]
197 +)))|(% style="width:1240px" %)(((
198 +[[[[image:image-20230324171109-1.png]]>>https://drive.ebrains.eu/f/c1ccb78be52e4bdba7cf/]]
199 +)))
200 +|(% style="width:593px" %)//Collection of useful information for researchers looking to share experimental data on EBRAINS.//|(% style="width:1240px" %)//The EBRAINS data descriptor//
215 215  
202 +=== **Introduction to data organisation ** ===
203 +
204 +Have you ever experienced not being able to find a file that you were sure you had somewhere? We have prepared a [[collection of guidelines>>https://drive.ebrains.eu/smart-link/25299f04-c4e5-4028-8f5f-3b8208f9a532/]] on how to organise files and folders to ensure consistency and reproducibility in the future.
205 +
206 +* Why is data organisation important?
207 +* How to organise my data repository?
208 +
209 +[[[[image:image-20230330120354-1.png||height="344" width="244"]]>>https://drive.ebrains.eu/f/707147a883b94fae8e69/]]
210 +
216 216  ----
217 217  
218 218  === **Integrate your data in the EBRAINS atlas services** ===
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228 228  (((
229 229  ==== ====
230 230  
226 +>
227 +
231 231  (((
232 232  >The curation process is time consuming and difficult
233 233  )))
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