Changes for page data-curation-copy

Last modified by eapapp on 2023/07/04 16:46
From version 53.1
edited by spieschnik
on 2023/04/25 15:36
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To version 55.1
edited by ingrreit
on 2023/04/25 17:28
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1 -XWiki.spieschnik
1 +XWiki.ingrreit
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21 21  
22 22  == **The EBRAINS curation process** ==
23 23  
24 +(% class="box successmessage" %)
25 +(((
26 +EBRAINS accepts **experimental data,** of all modalities and from all species, **models**, **software**, **web services **and **metadata models**. You'll find detailed information about each research product below.
27 +)))
28 +
24 24  In EBRAINS, multimodal and heterogenous neuroscience data, models and software are categorised and described in a standardised manner so that they can be effectively searched, compared, and analysed. This effort is referred to as curation. 
25 25  
26 26  >The EBRAINS curation process involves organising and annotating neuroscientific data to make the data discoverable and reusable.
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27 27  
28 28  Behind this process is the EBRAINS Curation team. Our mandate is to support you in sharing your data in line with the [[**FAIR principles**>>https://www.go-fair.org/fair-principles/]], whether you choose to describe only the key aspects of your data, or can invest in adding more detailed metadata.
29 29  
30 -=== About the curation team ===
31 31  
32 -[[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]]
33 -
34 -**Sophia Pieschnik**
35 -(% class="small" %)//Biology //
36 -Biology (B.Sc.)
37 -Neurocognitive Psychology (M.Sc.)
38 -
39 -
40 40  (% class="box successmessage" %)
41 41  (((
42 -**Particular needs? Contact us! **The process of sharing data can be modified to fit the needs of researchers and large-scale projects. Contact us if you have such requests and we'll be happy to work with you to find a solution that suits us both.
38 +**Particular needs? Contact us! **The workflows for sharing can be modified for researchers or research groups aiming to frequently publish larger numbers of their research products through EBRAINS. Please contact the curation service team in such cases.
43 43  )))
44 44  
45 45  (% class="box floatinginfobox" %)
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51 51  
52 52  
53 53  
54 -We promote sharing of experimental data, models, software, web services, metadata models,
50 +=== When you've completed the curation process ===
55 55  
52 +Curated data, models and software are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and programmatically via the [[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadata schemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]].
56 56  
54 +Data and models are linked to and discoverable via the species-specific [[EBRAINS Interactive Atlas Viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]].
55 +
56 +
57 57  ----
58 58  
59 59  === Step by step - Experimental data ===
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163 163  
164 164  ----
165 165  
166 -=== When you've completed the curation process ===
166 +=== Webservices and metadata models ===
167 167  
168 -Curated data, models and software are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and programmatically via the [[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadata schemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]].
168 +=== (% style="color: rgb(231, 76, 60); font-size: 16px" %)Contact....(% style="color:#4a5568; font-size:16px" %) (%%) ===
169 169  
170 -Data and models are linked to and discoverable via the species-specific [[EBRAINS Interactive Atlas Viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]].
170 +----
171 171  
172 +=== **The curation team: meet the curators** ===
173 +
174 +[[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]]
175 +
176 +**Sophia Pieschnik**
177 +(% class="small" %)Biology (B.Sc.)
178 +Neurocognitive Psychology (M.Sc.)
179 +
172 172  ----
173 173  
174 174  == **Information and resources for researchers looking to share data** ==
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177 177  
178 178  ----
179 179  
188 +=== **Enrich your dataset, model or software** ===
189 +
190 +(% style="color:#e74c3c" %)- Workflows [information]
191 +
192 +(% style="color:#e74c3c" %)- Learning resource [information]
193 +
194 +----
195 +
180 180  === **The benefits of sharing data ** ===
181 181  
182 182  (% style="color:#000000" %)Sharing your data, models or code (research products) via EBRAINS makes it discoverable amongst other research products available in the (%%)[[(% style="color:#000000" %)EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]](%%). This is made possible by the highly flexible metadata framework describing neuroscience data in detail.
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195 195  
196 196  ----
197 197  
198 -(% style="font-family:inherit" %) (% style="color:#1a202c; font-family:inherit; font-size:26px" %)**What can I share on EBRAINS? **
199 -
200 -(% class="wikigeneratedid" id="H" %)
201 -[[image:image-20230324170829-2.png]]
202 -
203 -
204 -----
205 -
206 206  === **At a glance: "Sharing experimental data on EBRAINS" ** ===
207 207  
208 208  
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215 215  
216 216  ----
217 217  
218 -=== **Integrate your data in the EBRAINS atlas services** ===
226 +=== **Integrate your data on EBRAINS with other services** ===
219 219  
220 -EBRAINS supports viewers for a variety of data, and is continuously looking to improve the services for visualising data. For 2D histology image data that is registered to an EBRAINS supported brain atlas, the data and the overlying atlas plates can be uploaded to the LocaliZoom viewer. See for example the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example.
228 +EBRAINS supports further integration for a variety of data, and is continuously looking to increase the number of interoperable services.
221 221  
222 -To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu.
230 +* Integrate image data with //the Mio viewer//: (% style="color:#e74c3c" %)[description]
231 +* Integrate atlas-registered 2D image data with //the Localizoom viewer//: (% style="color:#e74c3c" %)[description](%%). See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example.
232 +* Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description]
233 +* Integrate your data to //the atlas viewer Siibra//: (% style="color:#e74c3c" %)[description](%%). To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu.
223 223  
235 +
224 224  ----
225 225  
226 226  === **Common concerns - and answers ** ===