Changes for page data-curation-copy
Last modified by eapapp on 2023/07/04 16:46
From version 55.1
edited by ingrreit
on 2023/04/25 17:28
on 2023/04/25 17:28
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To version 54.1
edited by spieschnik
on 2023/04/25 15:36
on 2023/04/25 15:36
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... ... @@ -21,11 +21,6 @@ 21 21 22 22 == **The EBRAINS curation process** == 23 23 24 -(% class="box successmessage" %) 25 -((( 26 -EBRAINS accepts **experimental data,** of all modalities and from all species, **models**, **software**, **web services **and **metadata models**. You'll find detailed information about each research product below. 27 -))) 28 - 29 29 In EBRAINS, multimodal and heterogenous neuroscience data, models and software are categorised and described in a standardised manner so that they can be effectively searched, compared, and analysed. This effort is referred to as curation. 30 30 31 31 >The EBRAINS curation process involves organising and annotating neuroscientific data to make the data discoverable and reusable. ... ... @@ -32,10 +32,18 @@ 32 32 33 33 Behind this process is the EBRAINS Curation team. Our mandate is to support you in sharing your data in line with the [[**FAIR principles**>>https://www.go-fair.org/fair-principles/]], whether you choose to describe only the key aspects of your data, or can invest in adding more detailed metadata. 34 34 30 +=== About the curation team === 35 35 32 +[[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]] 33 + 34 +**Sophia Pieschnik** 35 +(% class="small" %)Biology (B.Sc.) 36 +Neurocognitive Psychology (M.Sc.) 37 + 38 + 36 36 (% class="box successmessage" %) 37 37 ((( 38 -**Particular needs? Contact us! **The workflowsforsharing can be modifiedforresearchers orresearchgroups aimingto frequentlypublish largernumbersoftheirresearchproductsthroughEBRAINS. Pleasecontactthecurationserviceteaminsuchcases.41 +**Particular needs? Contact us! **The process of sharing data can be modified to fit the needs of researchers and large-scale projects. Contact us if you have such requests and we'll be happy to work with you to find a solution that suits us both. 39 39 ))) 40 40 41 41 (% class="box floatinginfobox" %) ... ... @@ -47,13 +47,9 @@ 47 47 48 48 49 49 50 - ===Whenyou'vecompleted thecurationprocess===53 +We promote sharing of experimental data, models, software, web services, metadata models, 51 51 52 -Curated data, models and software are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and programmatically via the [[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadata schemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]]. 53 53 54 -Data and models are linked to and discoverable via the species-specific [[EBRAINS Interactive Atlas Viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]]. 55 - 56 - 57 57 ---- 58 58 59 59 === Step by step - Experimental data === ... ... @@ -163,20 +163,12 @@ 163 163 164 164 ---- 165 165 166 -=== We bservicesandmetadatamodels165 +=== When you've completed the curation process === 167 167 168 - ===(%style="color:rgb(231,76,60);font-size:16px"%)Contact....(%style="color:#4a5568; font-size:16px"%)(%%)===167 +Curated data, models and software are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and programmatically via the [[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadata schemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]]. 169 169 170 --- --169 +Data and models are linked to and discoverable via the species-specific [[EBRAINS Interactive Atlas Viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]]. 171 171 172 -=== **The curation team: meet the curators** === 173 - 174 -[[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]] 175 - 176 -**Sophia Pieschnik** 177 -(% class="small" %)Biology (B.Sc.) 178 -Neurocognitive Psychology (M.Sc.) 179 - 180 180 ---- 181 181 182 182 == **Information and resources for researchers looking to share data** == ... ... @@ -185,14 +185,6 @@ 185 185 186 186 ---- 187 187 188 -=== **Enrich your dataset, model or software** === 189 - 190 -(% style="color:#e74c3c" %)- Workflows [information] 191 - 192 -(% style="color:#e74c3c" %)- Learning resource [information] 193 - 194 ----- 195 - 196 196 === **The benefits of sharing data ** === 197 197 198 198 (% style="color:#000000" %)Sharing your data, models or code (research products) via EBRAINS makes it discoverable amongst other research products available in the (%%)[[(% style="color:#000000" %)EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]](%%). This is made possible by the highly flexible metadata framework describing neuroscience data in detail. ... ... @@ -211,6 +211,14 @@ 211 211 212 212 ---- 213 213 197 +(% style="font-family:inherit" %) (% style="color:#1a202c; font-family:inherit; font-size:26px" %)**What can I share on EBRAINS? ** 198 + 199 +(% class="wikigeneratedid" id="H" %) 200 +[[image:image-20230324170829-2.png]] 201 + 202 + 203 +---- 204 + 214 214 === **At a glance: "Sharing experimental data on EBRAINS" ** === 215 215 216 216 ... ... @@ -223,16 +223,12 @@ 223 223 224 224 ---- 225 225 226 -=== **Integrate your data on EBRAINSwithotherservices** ===217 +=== **Integrate your data in the EBRAINS atlas services** === 227 227 228 -EBRAINS supports furtherintegrationfor a variety of data, and is continuously looking to increase the numberofinteroperableservices.219 +EBRAINS supports viewers for a variety of data, and is continuously looking to improve the services for visualising data. For 2D histology image data that is registered to an EBRAINS supported brain atlas, the data and the overlying atlas plates can be uploaded to the LocaliZoom viewer. See for example the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. 229 229 230 -* Integrate image data with //the Mio viewer//: (% style="color:#e74c3c" %)[description] 231 -* Integrate atlas-registered 2D image data with //the Localizoom viewer//: (% style="color:#e74c3c" %)[description](%%). See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. 232 -* Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description] 233 -* Integrate your data to //the atlas viewer Siibra//: (% style="color:#e74c3c" %)[description](%%). To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu. 221 +To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu. 234 234 235 - 236 236 ---- 237 237 238 238 === **Common concerns - and answers ** ===