Changes for page data-curation-copy
Last modified by eapapp on 2023/07/04 16:46
From version 62.1
edited by ingrreit
on 2023/04/25 17:41
on 2023/04/25 17:41
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To version 54.1
edited by spieschnik
on 2023/04/25 15:36
on 2023/04/25 15:36
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... ... @@ -21,11 +21,6 @@ 21 21 22 22 == **The EBRAINS curation process** == 23 23 24 -(% class="box successmessage" %) 25 -((( 26 -EBRAINS accepts **experimental data,** of all modalities and from all species, **models**, **software**, **web services **and **metadata models**. You'll find detailed information about each research product below. 27 -))) 28 - 29 29 In EBRAINS, multimodal and heterogenous neuroscience data, models and software are categorised and described in a standardised manner so that they can be effectively searched, compared, and analysed. This effort is referred to as curation. 30 30 31 31 >The EBRAINS curation process involves organising and annotating neuroscientific data to make the data discoverable and reusable. ... ... @@ -32,19 +32,32 @@ 32 32 33 33 Behind this process is the EBRAINS Curation team. Our mandate is to support you in sharing your data in line with the [[**FAIR principles**>>https://www.go-fair.org/fair-principles/]], whether you choose to describe only the key aspects of your data, or can invest in adding more detailed metadata. 34 34 35 - Curateddata, models and software are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and programmaticallyviathe[[KnowledgeGraph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and softwareare integratedin the EBRAINS Knowledge Graph by interoperablemetadata schemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]].Dataand models are linked to and discoverable via the species-specific [[EBRAINS siibra atlas viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]].30 +=== About the curation team === 36 36 32 +[[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]] 37 37 38 -(% class="box infomessage" %) 34 +**Sophia Pieschnik** 35 +(% class="small" %)Biology (B.Sc.) 36 +Neurocognitive Psychology (M.Sc.) 37 + 38 + 39 +(% class="box successmessage" %) 39 39 ((( 40 -** We strongly recommend to startpreparing for data sharing as early as possible.** With a structured datarepositoryand adequatenotes onhowthe data was acquired, you greatlyminimize the effort required to publishyour data.Thetimeit takesto sharedataonEBRAINS heavilydependsonontheengagementfromtheresearcher andhow well the data and metadata is preparedbefore-hand.**[[Contact us forpersonalisedguidanceonhowtoprepareforsharing>>mailto:curation-support@ebrains.eu]].**41 +**Particular needs? Contact us! **The process of sharing data can be modified to fit the needs of researchers and large-scale projects. Contact us if you have such requests and we'll be happy to work with you to find a solution that suits us both. 41 41 ))) 42 42 43 -(% class="box successmessage" %)44 +(% class="box floatinginfobox" %) 44 44 ((( 45 -** Particulars?Contactus! **Theworkflowsfor sharingcanbemodifiedforresearchers orresearch groupsaimingtofrequentlypublishlargernumbersoftheirresearchproductsthroughEBRAINS.Pleasecontact the curation service teaminsuch46 +**We strongly recommend to start preparing for data sharing as early as possible.** With a structured data repository and adequate notes on how the data was acquired, you greatly minimize the effort required to publish your data. The time it takes to share data on EBRAINS heavily depends on on the engagement from the researcher and how well the data and metadata is prepared before-hand. **[[Contact us for personalised guidance on how to prepare for sharing>>mailto:curation-support@ebrains.eu]]. ** 46 46 ))) 47 47 49 + 50 + 51 + 52 + 53 +We promote sharing of experimental data, models, software, web services, metadata models, 54 + 55 + 48 48 ---- 49 49 50 50 === Step by step - Experimental data === ... ... @@ -154,21 +154,12 @@ 154 154 155 155 ---- 156 156 157 -=== We bservicesandmetadatamodels ===165 +=== When you've completed the curation process === 158 158 159 -(% class="wikigeneratedid" id="HContact...." %) 160 -(% style="color:#e74c3c; font-size:16px" %)Contact....(% style="color:#4a5568; font-size:16px" %) 167 +Curated data, models and software are made available in the [[the EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]]. This makes the data and metadata discoverable in the [[Knowledge Graph Search>>url:https://search.kg.ebrains.eu/]] and programmatically via the [[Knowledge Graph API>>url:https://docs.kg.ebrains.eu/8387ccd27a186dea3dd0b949dc528842/api_endpoints.html]]. The data, models and software are integrated in the EBRAINS Knowledge Graph by interoperable metadata schemas as defined in [[openMINDS>>url:https://github.com/HumanBrainProject/openMINDS/wiki]]. 161 161 162 --- --169 +Data and models are linked to and discoverable via the species-specific [[EBRAINS Interactive Atlas Viewer>>url:https://ebrains.eu/services/atlases/brain-atlases]] by using interoperable metadata schemas as defined in [[SANDS>>url:https://github.com/HumanBrainProject/SANDS/wiki]]. 163 163 164 -== **The curation team: meet the curators** == 165 - 166 -[[image:fb6d6429-709e-4f4d-be3b-eab0a46695bd.JPG||height="184" width="137"]] 167 - 168 -**Sophia Pieschnik** 169 -(% class="small" %)Biology (B.Sc.) 170 -Neurocognitive Psychology (M.Sc.) 171 - 172 172 ---- 173 173 174 174 == **Information and resources for researchers looking to share data** == ... ... @@ -177,30 +177,6 @@ 177 177 178 178 ---- 179 179 180 -=== **Improve your research product ** === 181 - 182 -==== **Add a tutorial or learning resource to your research product ** ==== 183 - 184 -==== (% style="color:#e74c3c" %)- Learning resource [information](%%) ==== 185 - 186 - 187 -==== **Create a workflow for .... ? ** ==== 188 - 189 -==== (% style="color:#e74c3c" %)- Workflows [information](%%) ==== 190 - 191 ----- 192 - 193 -=== **Integrate your data, models or software with other services** === 194 - 195 -EBRAINS supports further integration for a variety of data, and is continuously looking to increase the number of interoperable services. 196 - 197 -* Integrate image data with //the Mio viewer//: (% style="color:#e74c3c" %)[description] 198 -* Integrate atlas-registered 2D image data with //the Localizoom viewer//: (% style="color:#e74c3c" %)[description](%%). See the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. 199 -* Add your data, models or software to a// Live paper//: (% style="color:#e74c3c" %)[description] 200 -* Integrate your data to //the atlas viewer Siibra//: (% style="color:#e74c3c" %)[description](%%). To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu. 201 - 202 ----- 203 - 204 204 === **The benefits of sharing data ** === 205 205 206 206 (% style="color:#000000" %)Sharing your data, models or code (research products) via EBRAINS makes it discoverable amongst other research products available in the (%%)[[(% style="color:#000000" %)EBRAINS Knowledge Graph>>https://kg.ebrains.eu/]](%%). This is made possible by the highly flexible metadata framework describing neuroscience data in detail. ... ... @@ -219,6 +219,14 @@ 219 219 220 220 ---- 221 221 197 +(% style="font-family:inherit" %) (% style="color:#1a202c; font-family:inherit; font-size:26px" %)**What can I share on EBRAINS? ** 198 + 199 +(% class="wikigeneratedid" id="H" %) 200 +[[image:image-20230324170829-2.png]] 201 + 202 + 203 +---- 204 + 222 222 === **At a glance: "Sharing experimental data on EBRAINS" ** === 223 223 224 224 ... ... @@ -231,6 +231,14 @@ 231 231 232 232 ---- 233 233 217 +=== **Integrate your data in the EBRAINS atlas services** === 218 + 219 +EBRAINS supports viewers for a variety of data, and is continuously looking to improve the services for visualising data. For 2D histology image data that is registered to an EBRAINS supported brain atlas, the data and the overlying atlas plates can be uploaded to the LocaliZoom viewer. See for example the [[LocaliZoom links available for this dataset>>https://doi.org/10.25493/T686-7BX]] as an example. 220 + 221 +To learn more about how to integrate your data to atlases, check out the [[Atlas services>>https://ebrains.eu/services/atlases#Integratedatatoanatlas]] on ebrains.eu. 222 + 223 +---- 224 + 234 234 === **Common concerns - and answers ** === 235 235 236 236 (((